Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

54548807 .. 54553617

Gene Structure 4811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG342700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGATTTATGCACCACCAAAAGCCAGGATTTTCACAGCAAAGCTACTTGTTCTGTTTAATGTCTTGACTTATGGTTTGATCTTATTGGGTACAAGCCAAATCCCAAATGTTCTTCTGCGGTTGAAAGTTGTTGGATGGATTAATGTTGTGTTCAATGTCTCTGTGTTTGCTGCTCCTCTTAGTATTATGAGGCTGGTTATTAAAACAAAGAGTGTGGAATACATGTCATTCCCTATGTCATTCTGCTTAACTCTTTGTGCTGTTATGTGGTTCTTCTATGGCCTTTTAATAAGGGATTTATTCATAGCGGCACCAAACATCTTAGGGTTCGCCTTTGGGATTGGGCAGATGATTATGTTCTTGGTCTGTAAGAACACCAAGAAAGCTGTCTTACCAGAATATAGTCTAAATGATAAGATACCAAGCACAAACAGGATCATGTTAATTGAATCATATCAAAAAGAAGAAAAGCTTGCTCCATCAGATATGTTTTTCAACACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

167

Amino Acids

18.94

Weight (kDa)

9.57

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	43 - 127	2.8e-26	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AciI	CCGC	2 cut(s)	118, 308
AclWI	GGATC	1 cut(s)	443
AfaI	GTAC	1 cut(s)	91
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	4 cut(s)	124, 154, 449, 496
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	3 cut(s)	43, 386, 472
AluI	AGCT	3 cut(s)	43, 386, 472
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	443
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	1 cut(s)	170
ArsI	GACNNNNNNTTYG	2 cut(s)	58, 90
AseI	ATTAAT	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	2 cut(s)	129, 487
BciT130I	CCWGG	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	163
BisI	GCNGC	2 cut(s)	171, 309
BlsI	GCNGC	2 cut(s)	172, 310
Bme1390I	CCNGG	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	1 cut(s)	282
BshNI	GGYRCC	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	78, 435
BspACI	CCGC	2 cut(s)	118, 308
BspANI	GGCC	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	310
BssMI	GATC	2 cut(s)	78, 435
Bst2UI	CCWGG	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	2 cut(s)	179, 322
BstF5I	GGATG	1 cut(s)	140
BstKTI	GATC	2 cut(s)	81, 438
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	2 cut(s)	78, 435
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	90
CspCI	CAANNNNNGTGG	2 cut(s)	195, 230
CviAII	CATG	2 cut(s)	223, 439
CviJI	RGCY	7 cut(s)	23, 43, 96, 193, 282, 386, 472
CviKI_1	RGCY	7 cut(s)	23, 43, 96, 193, 282, 386, 472
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	2 cut(s)	179, 322
DpnI	GATC	2 cut(s)	80, 437
DpnII	GATC	2 cut(s)	78, 435
EcoRII	CCWGG	1 cut(s)	23
FaeI	CATG	2 cut(s)	226, 442
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FatI	CATG	2 cut(s)	222, 438
Fnu4HI	GCNGC	2 cut(s)	171, 309
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	2 cut(s)	171, 309
GluI	GCNGC	2 cut(s)	171, 309
HaeIII	GGCC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	226, 442
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	1 cut(s)	449
Hpy188I	TCNGA	1 cut(s)	484
Hpy188III	TCNNGA	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	179, 322
Hsp92II	CATG	2 cut(s)	226, 442
Kzo9I	GATC	2 cut(s)	78, 435
LmnI	GCTCC	2 cut(s)	178, 481
LpnPI	CCDG	5 cut(s)	10, 37, 179, 408, 418
Lsp1109I	GCAGC	1 cut(s)	157
MalI	GATC	2 cut(s)	80, 437
MboI	GATC	2 cut(s)	78, 435
MboII	GAAGA	3 cut(s)	104, 265, 476
MluCI	AATT	1 cut(s)	444
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	2 cut(s)	183, 186
MseI	TTAA	6 cut(s)	57, 141, 201, 248, 287, 443
MspR9I	CCNGG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	25
NdeII	GATC	2 cut(s)	78, 435
NlaIII	CATG	2 cut(s)	226, 442
NlaIV	GGNNCC	1 cut(s)	312
NspI	RCATGY	1 cut(s)	226
PciI	ACATGT	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	449
PkrI	GCNGC	2 cut(s)	172, 310
PscI	ACATGT	1 cut(s)	222
PshBI	ATTAAT	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	312
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SaqAI	TTAA	6 cut(s)	57, 141, 201, 248, 287, 443
SatI	GCNGC	2 cut(s)	171, 309
Sau3AI	GATC	2 cut(s)	78, 435
ScrFI	CCNGG	1 cut(s)	25
SetI	ASST	3 cut(s)	45, 388, 474
Sse9I	AATT	1 cut(s)	444
SsiI	CCGC	2 cut(s)	118, 308
StyD4I	CCNGG	1 cut(s)	23
TasI	AATT	1 cut(s)	444
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	6 cut(s)	57, 141, 201, 248, 287, 443
Tru9I	TTAA	6 cut(s)	57, 141, 201, 248, 287, 443
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	141
XceI	RCATGY	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.