Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

55588366 .. 55590217

Gene Structure 1852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26272

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCATACGGGATTTCATGTCATATTCTTCATGCATAATGGTATTAATTTGTTTCTATTTTATTCTTTTTGCAGACCAACATTTTATTGGATTTTCAAGAAAAAATCAACACAAGGATTCCCATCTATACCCTATTCAGTGTCATTGTTTAGCGCCATGTTGACATTCTACTATGCCTTCGTCAAGACAAACTGTTTGCTGCTCATCACGATAAATTCCATTGGCTGCTTCATCGAAACCGTGTACCTTGTTGTGTTCATGATATATGCAACACCAAAATCCAGGACTTTTACAACAAAGCTGCTTATTCTGTTTAATATCTTGGGTTATGGTTTGATGTTATTGTGTACAAGCCTAGTCCCAAATGTTCTTGTGAGGTTGAAAGTTGTTGGGTGGATAGTAATCGTGTTCAATGTCTGTGTGTTTGCTGCTCCTCTTACAATTATGAGGCAGGTTATTAAAACAAAGAGTGTGGAGTACATGTCATTCCCTTTGTCATTGAGCTTAACCCTGTGCGCTGTCATGTGGTTCTTCTATGGCCTTTTAATAAGAGATTTATTCATAGCGGCACCAAACGTGTTAGGGTTTGCGTTCGGAATTGTTCAGATGATTATGATCCTCGTCTACAGGAAGAAAACCAAGATAGCTGTCTTGACGGAATTCCGTCTAGGTGATCTGATACCAAGCGTTGCTGCTCCACTAAATGATGACATGACAGTAGCAATTGTCATTAATTCTCGATCGGAAGCTGGGGACGGAAAGAAGAGTTCTGAAACTGATGATGATCAGAATCCATTGGAGGGCCGGCCCAAAGGCAAGGCGACCTTGGCCGCTGCCTACGGCGTCATCTTGAGAAGGGGCTCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

289

Amino Acids

32.49

Weight (kDa)

9.55

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	13 - 93	1.8e-13	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	129 - 213	2.3e-27	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AccB1I	GGYRCC	1 cut(s)	568
AccI	GTMKAC	1 cut(s)	624
AciI	CCGC	2 cut(s)	566, 831
AclWI	GGATC	1 cut(s)	610
AcoI	YGGCCR	1 cut(s)	828
AcsI	RAATTY	2 cut(s)	214, 659
AcyI	GRCGYC	1 cut(s)	843
AfaI	GTAC	3 cut(s)	245, 349, 479
AfiI	CCNNNNNNNGG	1 cut(s)	800
AflIII	ACRYGT	2 cut(s)	480, 576
AgsI	TTSAA	3 cut(s)	97, 382, 412
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	4 cut(s)	301, 504, 647, 749
AluI	AGCT	4 cut(s)	301, 504, 647, 749
AlwI	GGATC	1 cut(s)	610
AoxI	GGCC	4 cut(s)	538, 802, 806, 828
ApeKI	GCWGC	6 cut(s)	199, 225, 301, 428, 692, 833
ApoI	RAATTY	2 cut(s)	214, 659
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
AseI	ATTAAT	2 cut(s)	45, 732
AspLEI	GCGC	2 cut(s)	155, 518
AspS9I	GGNCC	2 cut(s)	802, 807
AsuHPI	GGTGA	1 cut(s)	683
BanI	GGYRCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	863
BbvI	GCAGC	6 cut(s)	186, 212, 288, 415, 679, 820
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	1 cut(s)	856
BciT130I	CCWGG	1 cut(s)	283
BclI	TGATCA	1 cut(s)	784
BfaI	CTAG	2 cut(s)	356, 668
BfmI	CTRYAG	1 cut(s)	625
BfoI	RGCGCY	1 cut(s)	156
BfuAI	ACCTGC	1 cut(s)	442
BisI	GCNGC	8 cut(s)	200, 226, 302, 429, 567, 693, 831, 834
BlsI	GCNGC	8 cut(s)	201, 227, 303, 430, 568, 694, 832, 835
Bme1390I	CCNGG	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	802, 807
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	1 cut(s)	283
BsaBI	GATNNNNATC	5 cut(s)	121, 401, 614, 783, 789
BsaHI	GRCGYC	1 cut(s)	843
BsaJI	CCNNGG	1 cut(s)	825
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	1 cut(s)	800
Bse118I	RCCGGY	1 cut(s)	804
Bse8I	GATNNNNATC	5 cut(s)	121, 401, 614, 783, 789
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	825
BseJI	GATNNNNATC	5 cut(s)	121, 401, 614, 783, 789
BseLI	CCNNNNNNNGG	1 cut(s)	800
BseRI	GAGGAG	1 cut(s)	423
BseXI	GCAGC	6 cut(s)	186, 212, 288, 415, 679, 820
BseYI	CCCAGC	1 cut(s)	749
Bsh1285I	CGRYCG	1 cut(s)	743
BshFI	GGCC	4 cut(s)	540, 804, 808, 830
BshNI	GGYRCC	1 cut(s)	568
BsiEI	CGRYCG	1 cut(s)	743
BsiSI	CCGG	1 cut(s)	805
BslFI	GGGAC	2 cut(s)	344, 767
BslI	CCNNNNNNNGG	1 cut(s)	800
BsmFI	GGGAC	2 cut(s)	344, 767
BsnI	GGCC	4 cut(s)	540, 804, 808, 830
Bsp1286I	GDGCHC	1 cut(s)	863
Bsp1407I	TGTACA	1 cut(s)	347
Bsp143I	GATC	4 cut(s)	615, 673, 740, 784
BspACI	CCGC	2 cut(s)	566, 831
BspANI	GGCC	4 cut(s)	540, 804, 808, 830
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	570
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	610
BspT107I	GGYRCC	1 cut(s)	568
BsrFI	RCCGGY	1 cut(s)	804
BsrGI	TGTACA	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	804
BssECI	CCNNGG	1 cut(s)	825
BssMI	GATC	4 cut(s)	615, 673, 740, 784
BssNI	GRCGYC	1 cut(s)	843
BssT1I	CCWWGG	1 cut(s)	825
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	3 cut(s)	194, 241, 718
Bst6I	CTCTTC	1 cut(s)	758
BstACI	GRCGYC	1 cut(s)	843
BstAUI	TGTACA	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	806
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	155, 518
BstKTI	GATC	4 cut(s)	618, 676, 743, 787
BstMBI	GATC	4 cut(s)	615, 673, 740, 784
BstMCI	CGRYCG	1 cut(s)	743
BstMWI	GCNNNNNNNGC	1 cut(s)	827
BstNI	CCWGG	1 cut(s)	283
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	625
BstV1I	GCAGC	6 cut(s)	186, 212, 288, 415, 679, 820
BsuRI	GGCC	4 cut(s)	540, 804, 808, 830
BtsIMutI	CAGTG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	806
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	2 cut(s)	155, 518
Cfr10I	RCCGGY	1 cut(s)	804
Cfr13I	GGNCC	2 cut(s)	802, 807
CseI	GACGC	1 cut(s)	832
Csp6I	GTAC	3 cut(s)	244, 348, 478
CspCI	CAANNNNNGTGG	2 cut(s)	453, 488
CviAII	CATG	7 cut(s)	17, 31, 157, 259, 481, 523, 712
CviQI	GTAC	3 cut(s)	244, 348, 478
DpnI	GATC	4 cut(s)	617, 675, 742, 786
DpnII	GATC	4 cut(s)	615, 673, 740, 784
EaeI	YGGCCR	1 cut(s)	828
Eam1104I	CTCTTC	1 cut(s)	758
EarI	CTCTTC	1 cut(s)	758
Eco130I	CCWWGG	1 cut(s)	825
Eco24I	GRGCYC	1 cut(s)	863
EcoRI	GAATTC	1 cut(s)	659
EcoRII	CCWGG	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	825
EcoT22I	ATGCAT	2 cut(s)	6, 36
EcoT38I	GRGCYC	1 cut(s)	863
ErhI	CCWWGG	1 cut(s)	825
FaeI	CATG	7 cut(s)	20, 34, 160, 262, 484, 526, 715
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	2 cut(s)	344, 767
FatI	CATG	7 cut(s)	16, 30, 156, 258, 480, 522, 711
FbaI	TGATCA	1 cut(s)	784
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	8 cut(s)	200, 226, 302, 429, 567, 693, 831, 834
FriOI	GRGCYC	1 cut(s)	863
FseI	GGCCGGCC	1 cut(s)	808
Fsp4HI	GCNGC	8 cut(s)	200, 226, 302, 429, 567, 693, 831, 834
FspBI	CTAG	2 cut(s)	356, 668
GlaI	GCGC	2 cut(s)	154, 517
GluI	GCNGC	8 cut(s)	200, 226, 302, 429, 567, 693, 831, 834
GsaI	CCCAGC	1 cut(s)	753
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	4 cut(s)	540, 804, 808, 830
HapII	CCGG	1 cut(s)	805
HgaI	GACGC	1 cut(s)	832
HhaI	GCGC	2 cut(s)	155, 518
Hin1I	GRCGYC	1 cut(s)	843
Hin1II	CATG	7 cut(s)	20, 34, 160, 262, 484, 526, 715
Hin6I	GCGC	2 cut(s)	153, 516
HinP1I	GCGC	2 cut(s)	153, 516
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	2 cut(s)	117, 790
HpaII	CCGG	1 cut(s)	805
HphI	GGTGA	1 cut(s)	683
Hpy166II	GTNNAC	4 cut(s)	162, 244, 348, 625
Hpy188I	TCNGA	6 cut(s)	596, 606, 678, 745, 772, 789
Hpy188III	TCNNGA	7 cut(s)	97, 184, 208, 259, 652, 738, 850
Hpy8I	GTNNAC	4 cut(s)	162, 244, 348, 625
HpyAV	CCTTC	2 cut(s)	187, 849
HpyCH4III	ACNGT	3 cut(s)	194, 241, 718
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	4 cut(s)	4, 34, 72, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	827
HpySE526I	ACGT	1 cut(s)	576
Hsp92I	GRCGYC	1 cut(s)	843
Hsp92II	CATG	7 cut(s)	20, 34, 160, 262, 484, 526, 715
HspAI	GCGC	2 cut(s)	153, 516
KroI	GCCGGC	1 cut(s)	804
KroNI	GCCGGC	1 cut(s)	806
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	4 cut(s)	615, 673, 740, 784
LmnI	GCTCC	2 cut(s)	436, 700
LpnPI	CCDG	7 cut(s)	268, 295, 437, 524, 613, 735, 818
Lsp1109I	GCAGC	6 cut(s)	186, 212, 288, 415, 679, 820
MaeI	CTAG	2 cut(s)	356, 668
MaeII	ACGT	1 cut(s)	576
MalI	GATC	4 cut(s)	617, 675, 742, 786
MboI	GATC	4 cut(s)	615, 673, 740, 784
MboII	GAAGA	4 cut(s)	19, 523, 643, 775
MfeI	CAATTG	1 cut(s)	723
MhlI	GDGCHC	1 cut(s)	863
MluCI	AATT	8 cut(s)	46, 214, 441, 597, 659, 723, 733, 864
MnlI	CCTC	5 cut(s)	369, 441, 444, 629, 793
Mph1103I	ATGCAT	2 cut(s)	6, 36
MroNI	GCCGGC	1 cut(s)	804
MseI	TTAA	7 cut(s)	45, 315, 459, 506, 545, 732, 868
MspA1I	CMGCKG	1 cut(s)	833
MspI	CCGG	1 cut(s)	805
MspR9I	CCNGG	1 cut(s)	283
MunI	CAATTG	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	1 cut(s)	827
NaeI	GCCGGC	1 cut(s)	806
NdeII	GATC	4 cut(s)	615, 673, 740, 784
NgoMIV	GCCGGC	1 cut(s)	804
NlaIII	CATG	7 cut(s)	20, 34, 160, 262, 484, 526, 715
NlaIV	GGNNCC	1 cut(s)	570
NsiI	ATGCAT	2 cut(s)	6, 36
NspI	RCATGY	1 cut(s)	484
PagI	TCATGA	1 cut(s)	258
PciI	ACATGT	1 cut(s)	480
PdiI	GCCGGC	1 cut(s)	806
PfeI	GAWTC	2 cut(s)	117, 790
PfoI	TCCNGGA	1 cut(s)	281
PkrI	GCNGC	8 cut(s)	201, 227, 303, 430, 568, 694, 832, 835
Ple19I	CGATCG	1 cut(s)	743
PscI	ACATGT	1 cut(s)	480
PshBI	ATTAAT	2 cut(s)	45, 732
Psp6I	CCWGG	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	749
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	2 cut(s)	802, 807
PvuI	CGATCG	1 cut(s)	743
RigI	GGCCGGCC	1 cut(s)	808
RsaI	GTAC	3 cut(s)	245, 349, 479
RsaNI	GTAC	3 cut(s)	244, 348, 478
SaqAI	TTAA	7 cut(s)	45, 315, 459, 506, 545, 732, 868
SatI	GCNGC	8 cut(s)	200, 226, 302, 429, 567, 693, 831, 834
Sau3AI	GATC	4 cut(s)	615, 673, 740, 784
Sau96I	GGNCC	2 cut(s)	802, 807
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	863
SfcI	CTRYAG	1 cut(s)	625
SmlI	CTYRAG	1 cut(s)	850
SmoI	CTYRAG	1 cut(s)	850
Sse9I	AATT	8 cut(s)	46, 214, 441, 597, 659, 723, 733, 864
SsiI	CCGC	2 cut(s)	566, 831
SspMI	CTAG	2 cut(s)	356, 668
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	825
TaaI	ACNGT	3 cut(s)	194, 241, 718
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	2 cut(s)	234, 739
TasI	AATT	8 cut(s)	46, 214, 441, 597, 659, 723, 733, 864
TatI	WGTACW	2 cut(s)	347, 477
TauI	GCSGC	2 cut(s)	569, 833
TfiI	GAWTC	2 cut(s)	117, 790
Tru1I	TTAA	7 cut(s)	45, 315, 459, 506, 545, 732, 868
Tru9I	TTAA	7 cut(s)	45, 315, 459, 506, 545, 732, 868
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	6 cut(s)	199, 225, 301, 428, 692, 833
TspDTI	ATGAA	5 cut(s)	5, 19, 220, 247, 550
TspGWI	ACGGA	3 cut(s)	653, 671, 771
TspRI	CASTG	1 cut(s)	144
VspI	ATTAAT	2 cut(s)	45, 732
XapI	RAATTY	2 cut(s)	214, 659
XceI	RCATGY	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	624
XspI	CTAG	2 cut(s)	356, 668
Zsp2I	ATGCAT	2 cut(s)	6, 36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.