Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007398.1

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

8409 .. 13021

Gene Structure 4613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007398.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atggagaagagtccgctctcgaattccggtggagactgccggagggaaccgcttctcgagttggagaacggcgtcgagccaagcaggtcttggaggcttaacatcaatgagtttcggattccggaacagaacgagggtgaaggtgaaaaagggtgtcgacccttcagtaatatccgtcgtctctgcgcacccagtaccatcttcgccgtccttgtctaccttgccccactgattttcaagacaaagtctgttcaaggtttccaatctataccctattcagtggcattgtttagcgccatgttaatgctctattatggcttcctcaagacaaatgctttaattctcatcgtggtcaattccattggcagcttcatcgaaactgtgtaccttgtcatgtacttgatttatgcaccaccaaaagtcaggattttcacagtaaagctgcttgtcctgtttaatgtcttggcttatggtttgatcttagggggtacaagccaaatcccaaatgctagtcggcggttgacagttgttgggtatatcaatgttgtgttcaatgtctctgtgtatgctgctcctcttagtattatggcaccgaacatcttagggttcgcctttgggattgcgcagatgattatgttcttagtctacaagaaaaaaaagaaagttgccttaccagaatgtagtctaaatgatcagataccaaacacagacagggttgctactgtagaaaatgatgacatagtaacagcaggtgaaactaatactcaaactcaattggaagcgggggataaagaagagttcagaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

269

Amino Acids

29.91

Weight (kDa)

8.59

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	740
Acc16I	TGCGCA	2 cut(s)	187, 624
Acc36I	ACCTGC	2 cut(s)	75, 740
AccB1I	GGYRCC	1 cut(s)	589
AccBSI	CCGCTC	1 cut(s)	16
AccI	GTMKAC	3 cut(s)	157, 216, 645
AccIII	TCCGGA	1 cut(s)	121
AciI	CCGC	4 cut(s)	14, 50, 517, 782
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	4 cut(s)	196, 386, 398, 490
AgsI	TTSAA	3 cut(s)	238, 254, 553
AluBI	AGCT	3 cut(s)	369, 442, 807
AluI	AGCT	3 cut(s)	369, 442, 807
Alw26I	GTCTC	3 cut(s)	27, 185, 562
AlwNI	CAGNNNCTG	1 cut(s)	807
Ama87I	CYCGRG	1 cut(s)	56
Aor13HI	TCCGGA	1 cut(s)	121
ApeKI	GCWGC	3 cut(s)	366, 442, 569
ApoI	RAATTY	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	51
AspLEI	GCGC	3 cut(s)	188, 296, 625
AsuHPI	GGTGA	3 cut(s)	149, 155, 764
AvaI	CYCGRG	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	589
BbvI	GCAGC	3 cut(s)	378, 429, 556
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	2 cut(s)	85, 191
BcgI	CGANNNNNNTGC	2 cut(s)	355, 389
BclI	TGATCA	1 cut(s)	691
BcoDI	GTCTC	3 cut(s)	27, 185, 562
BfaI	CTAG	1 cut(s)	510
BfmI	CTRYAG	1 cut(s)	723
BfoI	RGCGCY	1 cut(s)	297
BfuAI	ACCTGC	2 cut(s)	75, 740
BisI	GCNGC	3 cut(s)	367, 443, 570
BlsI	GCNGC	3 cut(s)	368, 444, 571
BmeT110I	CYCGRG	1 cut(s)	56
BmiI	GGNNCC	2 cut(s)	48, 591
BmrI	ACTGGG	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	72
BsaWI	WCCGGW	2 cut(s)	26, 121
Bse1I	ACTGG	1 cut(s)	192
BseAI	TCCGGA	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	564
BseXI	GCAGC	3 cut(s)	378, 429, 556
BshNI	GGYRCC	1 cut(s)	589
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	27, 40, 122
BsmAI	GTCTC	3 cut(s)	27, 185, 562
BsmBI	CGTCTC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	56
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	2 cut(s)	477, 691
BspACI	CCGC	4 cut(s)	14, 50, 517, 782
BspEI	TCCGGA	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	48, 591
BspMI	ACCTGC	2 cut(s)	75, 740
BspT107I	GGYRCC	1 cut(s)	589
BsrBI	CCGCTC	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	192
BssMI	GATC	2 cut(s)	477, 691
BssNI	GRCGYC	1 cut(s)	72
Bst4CI	ACNGT	4 cut(s)	382, 436, 526, 724
Bst6I	CTCTTC	2 cut(s)	2, 789
BstACI	GRCGYC	1 cut(s)	72
BstDEI	CTNAG	4 cut(s)	481, 578, 601, 640
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	3 cut(s)	188, 296, 625
BstKTI	GATC	2 cut(s)	480, 694
BstMAI	GTCTC	3 cut(s)	27, 185, 562
BstMBI	GATC	2 cut(s)	477, 691
BstSFI	CTRYAG	1 cut(s)	723
BstV1I	GCAGC	3 cut(s)	378, 429, 556
BtsIMutI	CAGTG	2 cut(s)	227, 285
BveI	ACCTGC	2 cut(s)	75, 740
CaiI	CAGNNNCTG	1 cut(s)	807
CfoI	GCGC	3 cut(s)	188, 296, 625
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	4 cut(s)	195, 385, 397, 489
CviAII	CATG	2 cut(s)	298, 394
CviJI	RGCY	8 cut(s)	79, 97, 318, 369, 442, 467, 495, 807
CviKI_1	RGCY	8 cut(s)	79, 97, 318, 369, 442, 467, 495, 807
CviQI	GTAC	4 cut(s)	195, 385, 397, 489
DdeI	CTNAG	4 cut(s)	481, 578, 601, 640
DpnI	GATC	2 cut(s)	479, 693
DpnII	GATC	2 cut(s)	477, 691
Eam1104I	CTCTTC	2 cut(s)	2, 789
EarI	CTCTTC	2 cut(s)	2, 789
Eco57I	CTGAAG	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	2 cut(s)	301, 397
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FatI	CATG	2 cut(s)	297, 393
FauI	CCCGC	1 cut(s)	775
FbaI	TGATCA	1 cut(s)	691
FblI	GTMKAC	3 cut(s)	157, 216, 645
Fnu4HI	GCNGC	3 cut(s)	367, 443, 570
Fsp4HI	GCNGC	3 cut(s)	367, 443, 570
FspBI	CTAG	1 cut(s)	510
FspI	TGCGCA	2 cut(s)	187, 624
GlaI	GCGC	3 cut(s)	187, 295, 624
GluI	GCNGC	3 cut(s)	367, 443, 570
HaeII	RGCGCY	1 cut(s)	297
HapII	CCGG	3 cut(s)	27, 40, 122
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	3 cut(s)	188, 296, 625
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	301, 397
Hin6I	GCGC	3 cut(s)	186, 294, 623
HinP1I	GCGC	3 cut(s)	186, 294, 623
HincII	GTYRAC	2 cut(s)	158, 522
HindII	GTYRAC	2 cut(s)	158, 522
HinfI	GANTC	2 cut(s)	10, 118
HpaII	CCGG	3 cut(s)	27, 40, 122
HphI	GGTGA	3 cut(s)	149, 155, 764
Hpy166II	GTNNAC	5 cut(s)	158, 217, 385, 522, 646
Hpy188I	TCNGA	3 cut(s)	117, 696, 803
Hpy188III	TCNNGA	6 cut(s)	19, 56, 122, 238, 325, 424
Hpy8I	GTNNAC	5 cut(s)	158, 217, 385, 522, 646
Hpy99I	CGWCG	2 cut(s)	77, 180
HpyAV	CCTTC	2 cut(s)	134, 172
HpyCH4III	ACNGT	4 cut(s)	382, 436, 526, 724
HpyCH4V	TGCA	1 cut(s)	410
HpyF3I	CTNAG	4 cut(s)	481, 578, 601, 640
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	301, 397
HspAI	GCGC	3 cut(s)	186, 294, 623
Kpn2I	TCCGGA	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	2 cut(s)	477, 691
LmnI	GCTCC	1 cut(s)	577
Lsp1109I	GCAGC	3 cut(s)	378, 429, 556
MaeI	CTAG	1 cut(s)	510
MaeIII	GTNAC	1 cut(s)	742
MalI	GATC	2 cut(s)	479, 693
MbiI	CCGCTC	1 cut(s)	16
MboI	GATC	2 cut(s)	477, 691
MboII	GAAGA	3 cut(s)	19, 193, 806
MfeI	CAATTG	1 cut(s)	773
MluCI	AATT	4 cut(s)	22, 339, 355, 773
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	5 cut(s)	36, 87, 127, 332, 585
MroI	TCCGGA	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	4 cut(s)	99, 302, 338, 456
MslI	CAYNNNNRTG	1 cut(s)	302
MspI	CCGG	3 cut(s)	27, 40, 122
MunI	CAATTG	1 cut(s)	773
NdeII	GATC	2 cut(s)	477, 691
NlaIII	CATG	2 cut(s)	301, 397
NlaIV	GGNNCC	2 cut(s)	48, 591
NsbI	TGCGCA	2 cut(s)	187, 624
PaeR7I	CTCGAG	1 cut(s)	56
PaqCI	CACCTGC	1 cut(s)	740
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	118
PflFI	GACNNNGTC	1 cut(s)	244
PkrI	GCNGC	3 cut(s)	368, 444, 571
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	48, 591
PstNI	CAGNNNCTG	1 cut(s)	807
PsyI	GACNNNGTC	1 cut(s)	244
RsaI	GTAC	4 cut(s)	196, 386, 398, 490
RsaNI	GTAC	4 cut(s)	195, 385, 397, 489
RseI	CAYNNNNRTG	1 cut(s)	302
SalI	GTCGAC	1 cut(s)	156
SaqAI	TTAA	4 cut(s)	99, 302, 338, 456
SatI	GCNGC	3 cut(s)	367, 443, 570
Sau3AI	GATC	2 cut(s)	477, 691
SchI	GAGTC	1 cut(s)	19
SetI	ASST	9 cut(s)	89, 145, 222, 259, 371, 390, 444, 754, 809
SfcI	CTRYAG	1 cut(s)	723
Sfr274I	CTCGAG	1 cut(s)	56
SlaI	CTCGAG	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	2 cut(s)	56, 323
SmoI	CTYRAG	2 cut(s)	56, 323
Sse9I	AATT	4 cut(s)	22, 339, 355, 773
SsiI	CCGC	4 cut(s)	14, 50, 517, 782
SspMI	CTAG	1 cut(s)	510
TaaI	ACNGT	4 cut(s)	382, 436, 526, 724
TaqI	TCGA	5 cut(s)	20, 57, 75, 157, 375
TasI	AATT	4 cut(s)	22, 339, 355, 773
TatI	WGTACW	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	4 cut(s)	99, 302, 338, 456
Tru9I	TTAA	4 cut(s)	99, 302, 338, 456
TscAI	CASTG	2 cut(s)	234, 285
TseI	GCWGC	3 cut(s)	366, 442, 569
TspDTI	ATGAA	1 cut(s)	361
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	234, 285
Tth111I	GACNNNGTC	1 cut(s)	244
XapI	RAATTY	1 cut(s)	22
XcmI	CCANNNNNNNNNTGG	1 cut(s)	87
XhoI	CTCGAG	1 cut(s)	56
XmiI	GTMKAC	3 cut(s)	157, 216, 645
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.