Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Forward (+)

58068451 .. 58070528

Gene Structure 2078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG350100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGAGCCCTTGATCTTGATCTTATGGCTTCTGTGTTTGGAATTTTGGGTACCATCGTCGCGTTCCTCGTTTACCTAGCCCCACTACCAACATTTTATTGGATTTTCAAGAAAAAATCAACACAAGGATTCCCATCTATACCCTATTCAGTGTCATTGTTTAGCGCCATGTTGACACTCTACTATGCCTTCGTCAAGACAAACTGTTTGCTGCTCATCACGATAAATTCCATTGGCTGCTTCATCGAAACCGTGTACCTTGTTGTGTTCATGATATATGCAACACCAAAATCCAGGACTTTTGCAACAAAGCTGCTTATTCTGTTTAATATCTTGGGTTATGGTTTGATGTTATTGTGTACAAGCCTAGTCCCAAATGTTCTTCTGAGGTTGAAAGTTGTTGGGTGGATAGTAATCGTGTTCAATGTCTGTGTGTTTGCTGCTCCTCTTACAATTATGGCACCAAACGTGTTAGGGTTTGCGTTCGGAATTGTTCAGATGATTATGATCCTCGTCTACAGGAAGAAAACCAAGATAGCTGTCTTGACGGAATTCCGTCTAGGTGATCTGATACCAAGCACAAATATGGTTGCTGCTGCACTAAATGATGACATGACAGTAGCAATTGTCATTAATTCTCGACCGGTAGCTGGGGACGCAAAGAAGAGTTCTGAAACTGATGATGATCAGAATCCATTGGAGGGCCGGCCCAAAGTCAAGGCGACCTTGGCCGCTGCCTACGGCGTCATCTTGAGAAGGGGCTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

256

Amino Acids

28.06

Weight (kDa)

9.43

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 97	5.6e-20	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	50, 460
AccI	GTMKAC	1 cut(s)	516
AccII	CGCG	1 cut(s)	62
AciI	CCGC	1 cut(s)	732
AclWI	GGATC	1 cut(s)	502
AcoI	YGGCCR	1 cut(s)	729
AcsI	RAATTY	3 cut(s)	42, 226, 551
AcyI	GRCGYC	1 cut(s)	744
AfaI	GTAC	3 cut(s)	52, 257, 361
AfiI	CCNNNNNNNGG	2 cut(s)	650, 701
AflIII	ACRYGT	1 cut(s)	468
AgeI	ACCGGT	1 cut(s)	643
AgsI	TTSAA	3 cut(s)	109, 394, 424
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	3 cut(s)	313, 539, 650
AluI	AGCT	3 cut(s)	313, 539, 650
AlwI	GGATC	1 cut(s)	502
AoxI	GGCC	3 cut(s)	703, 707, 729
ApeKI	GCWGC	7 cut(s)	211, 237, 313, 440, 593, 596, 734
ApoI	RAATTY	3 cut(s)	42, 226, 551
ArsI	GACNNNNNNTTYG	2 cut(s)	190, 222
AseI	ATTAAT	1 cut(s)	633
AsiGI	ACCGGT	1 cut(s)	643
Asp718I	GGTACC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	703, 708
AsuHPI	GGTGA	1 cut(s)	575
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BanI	GGYRCC	2 cut(s)	50, 460
BanII	GRGCYC	2 cut(s)	10, 764
BbvI	GCAGC	7 cut(s)	198, 224, 300, 427, 580, 583, 721
BccI	CCATC	2 cut(s)	62, 142
BceAI	ACGGC	1 cut(s)	757
BciT130I	CCWGG	1 cut(s)	295
BclI	TGATCA	1 cut(s)	685
BfaI	CTAG	3 cut(s)	77, 368, 560
BfmI	CTRYAG	1 cut(s)	517
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	8 cut(s)	212, 238, 314, 441, 594, 597, 732, 735
BlsI	GCNGC	8 cut(s)	213, 239, 315, 442, 595, 598, 733, 736
Bme1390I	CCNGG	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	703, 708
BmiI	GGNNCC	3 cut(s)	7, 52, 462
BmrFI	CCNGG	1 cut(s)	295
BsaBI	GATNNNNATC	6 cut(s)	18, 133, 413, 506, 684, 690
BsaHI	GRCGYC	1 cut(s)	744
BsaJI	CCNNGG	1 cut(s)	726
BsaWI	WCCGGW	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	2 cut(s)	650, 701
Bse118I	RCCGGY	2 cut(s)	643, 705
Bse8I	GATNNNNATC	6 cut(s)	18, 133, 413, 506, 684, 690
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	726
BseJI	GATNNNNATC	6 cut(s)	18, 133, 413, 506, 684, 690
BseLI	CCNNNNNNNGG	2 cut(s)	650, 701
BseMII	CTCAG	1 cut(s)	377
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	7 cut(s)	198, 224, 300, 427, 580, 583, 721
BseYI	CCCAGC	1 cut(s)	650
BsgI	GTGCAG	1 cut(s)	582
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	644
BshFI	GGCC	3 cut(s)	705, 709, 731
BshNI	GGYRCC	2 cut(s)	50, 460
BshTI	ACCGGT	1 cut(s)	643
BsiEI	CGRYCG	1 cut(s)	644
BsiSI	CCGG	2 cut(s)	644, 706
BslFI	GGGAC	2 cut(s)	356, 668
BslI	CCNNNNNNNGG	2 cut(s)	650, 701
BsmFI	GGGAC	2 cut(s)	356, 668
BsnI	GGCC	3 cut(s)	705, 709, 731
Bsp1286I	GDGCHC	2 cut(s)	10, 764
Bsp1407I	TGTACA	1 cut(s)	359
Bsp143I	GATC	5 cut(s)	13, 19, 507, 565, 685
BspACI	CCGC	1 cut(s)	732
BspANI	GGCC	3 cut(s)	705, 709, 731
BspCNI	CTCAG	1 cut(s)	378
BspFNI	CGCG	1 cut(s)	62
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	3 cut(s)	7, 52, 462
BspPI	GGATC	1 cut(s)	502
BspT107I	GGYRCC	2 cut(s)	50, 460
BsrFI	RCCGGY	2 cut(s)	643, 705
BsrGI	TGTACA	1 cut(s)	359
BssAI	RCCGGY	2 cut(s)	643, 705
BssECI	CCNNGG	1 cut(s)	726
BssMI	GATC	5 cut(s)	13, 19, 507, 565, 685
BssNI	GRCGYC	1 cut(s)	744
BssT1I	CCWWGG	1 cut(s)	726
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	3 cut(s)	206, 253, 619
Bst6I	CTCTTC	1 cut(s)	659
BstACI	GRCGYC	1 cut(s)	744
BstAUI	TGTACA	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	707
BstDEI	CTNAG	1 cut(s)	386
BstFNI	CGCG	1 cut(s)	62
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	5 cut(s)	16, 22, 510, 568, 688
BstMBI	GATC	5 cut(s)	13, 19, 507, 565, 685
BstMCI	CGRYCG	1 cut(s)	644
BstMWI	GCNNNNNNNGC	2 cut(s)	656, 728
BstNI	CCWGG	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	517
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	7 cut(s)	198, 224, 300, 427, 580, 583, 721
BsuRI	GGCC	3 cut(s)	705, 709, 731
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	707
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	2 cut(s)	643, 705
Cfr13I	GGNCC	2 cut(s)	703, 708
CseI	GACGC	2 cut(s)	665, 733
Csp6I	GTAC	3 cut(s)	51, 256, 360
CspAI	ACCGGT	1 cut(s)	643
CviAII	CATG	3 cut(s)	169, 271, 613
CviQI	GTAC	3 cut(s)	51, 256, 360
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	5 cut(s)	15, 21, 509, 567, 687
DpnII	GATC	5 cut(s)	13, 19, 507, 565, 685
EaeI	YGGCCR	1 cut(s)	729
Eam1104I	CTCTTC	1 cut(s)	659
EarI	CTCTTC	1 cut(s)	659
Eco130I	CCWWGG	1 cut(s)	726
Eco24I	GRGCYC	2 cut(s)	10, 764
EcoRI	GAATTC	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	726
EcoT38I	GRGCYC	2 cut(s)	10, 764
ErhI	CCWWGG	1 cut(s)	726
FaeI	CATG	3 cut(s)	172, 274, 616
FalI	AAGNNNNNCTT	2 cut(s)	710, 742
FaqI	GGGAC	2 cut(s)	356, 668
FatI	CATG	3 cut(s)	168, 270, 612
FbaI	TGATCA	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	8 cut(s)	212, 238, 314, 441, 594, 597, 732, 735
FriOI	GRGCYC	2 cut(s)	10, 764
FseI	GGCCGGCC	1 cut(s)	709
Fsp4HI	GCNGC	8 cut(s)	212, 238, 314, 441, 594, 597, 732, 735
FspBI	CTAG	3 cut(s)	77, 368, 560
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	8 cut(s)	212, 238, 314, 441, 594, 597, 732, 735
GsaI	CCCAGC	1 cut(s)	654
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	705, 709, 731
HapII	CCGG	2 cut(s)	644, 706
HgaI	GACGC	2 cut(s)	665, 733
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	744
Hin1II	CATG	3 cut(s)	172, 274, 616
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	129, 691
HpaII	CCGG	2 cut(s)	644, 706
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	5 cut(s)	73, 174, 256, 360, 517
Hpy188I	TCNGA	6 cut(s)	387, 488, 498, 570, 673, 690
Hpy188III	TCNNGA	8 cut(s)	17, 109, 196, 220, 271, 544, 639, 751
Hpy8I	GTNNAC	5 cut(s)	73, 174, 256, 360, 517
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	199, 750
HpyCH4III	ACNGT	3 cut(s)	206, 253, 619
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	3 cut(s)	281, 305, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	656, 728
HpyF3I	CTNAG	1 cut(s)	386
HpySE526I	ACGT	1 cut(s)	468
Hsp92I	GRCGYC	1 cut(s)	744
Hsp92II	CATG	3 cut(s)	172, 274, 616
HspAI	GCGC	1 cut(s)	165
KpnI	GGTACC	1 cut(s)	54
KroI	GCCGGC	1 cut(s)	705
KroNI	GCCGGC	1 cut(s)	707
Ksp22I	TGATCA	1 cut(s)	685
Kzo9I	GATC	5 cut(s)	13, 19, 507, 565, 685
LmnI	GCTCC	2 cut(s)	5, 448
LpnPI	CCDG	6 cut(s)	280, 307, 505, 636, 657, 719
Lsp1109I	GCAGC	7 cut(s)	198, 224, 300, 427, 580, 583, 721
MaeI	CTAG	3 cut(s)	77, 368, 560
MaeII	ACGT	1 cut(s)	468
MalI	GATC	5 cut(s)	15, 21, 509, 567, 687
MboI	GATC	5 cut(s)	13, 19, 507, 565, 685
MboII	GAAGA	3 cut(s)	374, 535, 676
MfeI	CAATTG	1 cut(s)	624
MhlI	GDGCHC	2 cut(s)	10, 764
MluCI	AATT	8 cut(s)	42, 226, 453, 489, 551, 624, 634, 765
MnlI	CCTC	5 cut(s)	77, 381, 456, 521, 694
MroNI	GCCGGC	1 cut(s)	705
MseI	TTAA	2 cut(s)	327, 633
MslI	CAYNNNNRTG	1 cut(s)	584
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	2 cut(s)	644, 706
MspR9I	CCNGG	1 cut(s)	295
MunI	CAATTG	1 cut(s)	624
MvaI	CCWGG	1 cut(s)	295
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	656, 728
NaeI	GCCGGC	1 cut(s)	707
NdeII	GATC	5 cut(s)	13, 19, 507, 565, 685
NgoMIV	GCCGGC	1 cut(s)	705
NlaIII	CATG	3 cut(s)	172, 274, 616
NlaIV	GGNNCC	3 cut(s)	7, 52, 462
PagI	TCATGA	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PdiI	GCCGGC	1 cut(s)	707
PfeI	GAWTC	2 cut(s)	129, 691
PfoI	TCCNGGA	1 cut(s)	293
PinAI	ACCGGT	1 cut(s)	643
PkrI	GCNGC	8 cut(s)	213, 239, 315, 442, 595, 598, 733, 736
PshBI	ATTAAT	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	293
PspFI	CCCAGC	1 cut(s)	650
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	3 cut(s)	7, 52, 462
PspPI	GGNCC	2 cut(s)	703, 708
RigI	GGCCGGCC	1 cut(s)	709
RsaI	GTAC	3 cut(s)	52, 257, 361
RsaNI	GTAC	3 cut(s)	51, 256, 360
RseI	CAYNNNNRTG	1 cut(s)	584
SaqAI	TTAA	2 cut(s)	327, 633
SatI	GCNGC	8 cut(s)	212, 238, 314, 441, 594, 597, 732, 735
Sau3AI	GATC	5 cut(s)	13, 19, 507, 565, 685
Sau96I	GGNCC	2 cut(s)	703, 708
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	2 cut(s)	10, 764
SetI	ASST	9 cut(s)	78, 261, 315, 392, 471, 541, 565, 652, 728
SfcI	CTRYAG	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	751
SmoI	CTYRAG	1 cut(s)	751
Sse9I	AATT	8 cut(s)	42, 226, 453, 489, 551, 624, 634, 765
SsiI	CCGC	1 cut(s)	732
SspMI	CTAG	3 cut(s)	77, 368, 560
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	726
TaaI	ACNGT	3 cut(s)	206, 253, 619
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	2 cut(s)	246, 640
TasI	AATT	8 cut(s)	42, 226, 453, 489, 551, 624, 634, 765
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	1 cut(s)	734
TfiI	GAWTC	2 cut(s)	129, 691
Tru1I	TTAA	2 cut(s)	327, 633
Tru9I	TTAA	2 cut(s)	327, 633
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	7 cut(s)	211, 237, 313, 440, 593, 596, 734
TspDTI	ATGAA	2 cut(s)	232, 259
TspGWI	ACGGA	2 cut(s)	545, 563
TspRI	CASTG	1 cut(s)	156
VspI	ATTAAT	1 cut(s)	633
XapI	RAATTY	3 cut(s)	42, 226, 551
XcmI	CCANNNNNNNNNTGG	1 cut(s)	96
XmiI	GTMKAC	1 cut(s)	516
XspI	CTAG	3 cut(s)	77, 368, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.