Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

28883212 .. 28884502

Gene Structure 1291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g26290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGTGTTACTAGCTCCACTGCCAACATTTTATAAGATTTTCAAGAAAAAATCAACAGAGGGATTCCAATCTATACCTTATGCAGTGGCACTGTTTAGCGCCATGTTGATGCTCTACTATGCCTTCCTCAAGGGACATGCTTTCATGCTCATCACCATCAATTCCATCGCCTGCGTCATCGAAACAAGTTATCTTGTAATCTACATGATTTATGCACCAGCAAAAATCAGGATTTATACGGCTAAGCTACTTATCCTTTTCAATGTGGGGGCTTATGGTGTGATCTTATTTGCTACTTCCTTAATCCCAGATCCTTATCTGAGGATTAAAATCGTTGGGTGGACTAACGTTGTGTTTTCTGTATGTGTATTTGCTGCTCCTCTTAGTATAATGAGGCTAGTTATTAAAACAAGGAGTGTGGAATACATGTCCTTCCCTTTGTCGTTCTGCTTAACTCTATGCGCTGTAATGTGGTTCTTCTATGGCCTTCTACTAAGAGATTTATTCATAGCAGTACGAATTCTCGGGTTCGGGTTTGGGATTGCGCAGATGATCATGTACCTAGTTTTCAAGAACTCAAAGAAAGCCGTCTTACCCCAATATATTCTCAAAGAGATACCAAATGGAAATGGGGTTGCAGAAAATGACAATCAGTTGAAGGAAGAAGACACAAATGACAGCCAGGTTGAAGATGTTTGGTCGGAGAGCATGACAAGCAAGGTTGAAAATGCTCGGTCAGAAAGCATGACAAGCGAGGTTGAAGATGCTCGGTCGGAAAGCATGACAAGCAAGGTCGAAGATGCTCGGTTGGAGAGCATGACAAGCAAGGTTGAAGATGCAACTACAGAAACAAATGAATCAGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

290

Amino Acids

32.57

Weight (kDa)

5.65

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	33
Acc16I	TGCGCA	1 cut(s)	546
AclI	AACGTT	1 cut(s)	348
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	1 cut(s)	519
AfaI	GTAC	2 cut(s)	516, 560
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	8 cut(s)	43, 262, 571, 658, 689, 725, 761, 833
AjnI	CCWGG	1 cut(s)	681
AluBI	AGCT	2 cut(s)	14, 247
AluI	AGCT	2 cut(s)	14, 247
AlwI	GGATC	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	1 cut(s)	484
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	519
AspLEI	GCGC	3 cut(s)	101, 464, 547
AsuHPI	GGTGA	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	524
BbsI	GAAGAC	1 cut(s)	672
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	2 cut(s)	164, 173
BceAI	ACGGC	2 cut(s)	255, 572
BciT130I	CCWGG	1 cut(s)	683
BclI	TGATCA	1 cut(s)	552
BfaI	CTAG	3 cut(s)	11, 398, 563
BfmI	CTRYAG	1 cut(s)	843
BfoI	RGCGCY	1 cut(s)	102
BisI	GCNGC	1 cut(s)	375
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	376
Bme1390I	CCNGG	1 cut(s)	683
BmeT110I	CYCGRG	1 cut(s)	524
BmrFI	CCNGG	1 cut(s)	683
BmsI	GCATC	4 cut(s)	99, 754, 790, 826
BpiI	GAAGAC	1 cut(s)	672
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	113
BsaBI	GATNNNNATC	3 cut(s)	67, 315, 329
Bse8I	GATNNNNATC	3 cut(s)	67, 315, 329
BseBI	CCWGG	1 cut(s)	683
BseJI	GATNNNNATC	3 cut(s)	67, 315, 329
BseMII	CTCAG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	361
Bsh1285I	CGRYCG	1 cut(s)	773
BshFI	GGCC	1 cut(s)	486
BsiEI	CGRYCG	1 cut(s)	773
BsiHKCI	CYCGRG	1 cut(s)	524
BslFI	GGGAC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	486
BsoBI	CYCGRG	1 cut(s)	524
Bsp143I	GATC	3 cut(s)	282, 310, 552
Bsp1720I	GCTNAGC	1 cut(s)	243
BspANI	GGCC	1 cut(s)	486
BspCNI	CTCAG	1 cut(s)	312
BspPI	GGATC	1 cut(s)	305
BssMI	GATC	3 cut(s)	282, 310, 552
Bst2UI	CCWGG	1 cut(s)	683
Bst4CI	ACNGT	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	4 cut(s)	243, 320, 383, 494
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	3 cut(s)	101, 464, 547
BstKTI	GATC	3 cut(s)	285, 313, 555
BstMBI	GATC	3 cut(s)	282, 310, 552
BstMCI	CGRYCG	1 cut(s)	773
BstMWI	GCNNNNNNNGC	4 cut(s)	714, 750, 786, 822
BstNI	CCWGG	1 cut(s)	683
BstNSI	RCATGY	2 cut(s)	140, 430
BstSCI	CCNGG	1 cut(s)	681
BstSFI	CTRYAG	1 cut(s)	843
BstV1I	GCAGC	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	672
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	151
BtsI	GCAGTG	2 cut(s)	17, 90
BtsIMutI	CAGTG	3 cut(s)	17, 89, 90
Cac8I	GCNNGC	1 cut(s)	172
CfoI	GCGC	3 cut(s)	101, 464, 547
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	515, 559
CspCI	CAANNNNNGTGG	2 cut(s)	399, 434
CviJI	RGCY	8 cut(s)	14, 242, 247, 272, 397, 486, 587, 681
CviKI_1	RGCY	8 cut(s)	14, 242, 247, 272, 397, 486, 587, 681
CviQI	GTAC	2 cut(s)	515, 559
DdeI	CTNAG	4 cut(s)	243, 320, 383, 494
DpnI	GATC	3 cut(s)	284, 312, 554
DpnII	GATC	3 cut(s)	282, 310, 552
Eco88I	CYCGRG	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	681
FaqI	GGGAC	1 cut(s)	147
FbaI	TGATCA	1 cut(s)	552
Fnu4HI	GCNGC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	3 cut(s)	11, 398, 563
FspI	TGCGCA	1 cut(s)	546
GlaI	GCGC	3 cut(s)	100, 463, 546
GluI	GCNGC	1 cut(s)	375
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	486
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	3 cut(s)	101, 464, 547
Hin6I	GCGC	3 cut(s)	99, 462, 545
HinP1I	GCGC	3 cut(s)	99, 462, 545
HinfI	GANTC	2 cut(s)	63, 857
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	4 cut(s)	321, 703, 739, 775
Hpy188III	TCNNGA	3 cut(s)	43, 229, 571
Hpy8I	GTNNAC	1 cut(s)	342
HpyAV	CCTTC	4 cut(s)	133, 442, 497, 652
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	4 cut(s)	83, 215, 638, 839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	714, 750, 786, 822
HpyF3I	CTNAG	4 cut(s)	243, 320, 383, 494
HpySE526I	ACGT	1 cut(s)	348
HspAI	GCGC	3 cut(s)	99, 462, 545
Ksp22I	TGATCA	1 cut(s)	552
Kzo9I	GATC	3 cut(s)	282, 310, 552
LmnI	GCTCC	2 cut(s)	19, 382
LpnPI	CCDG	6 cut(s)	184, 214, 231, 321, 668, 695
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	4 cut(s)	99, 754, 790, 826
MaeI	CTAG	3 cut(s)	11, 398, 563
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	3 cut(s)	284, 312, 554
MboI	GATC	3 cut(s)	282, 310, 552
MboII	GAAGA	7 cut(s)	469, 674, 677, 701, 773, 809, 845
MflI	RGATCY	1 cut(s)	310
MluCI	AATT	2 cut(s)	160, 519
MmeI	TCCRAC	3 cut(s)	681, 753, 789
MnlI	CCTC	6 cut(s)	52, 137, 315, 387, 390, 748
MseI	TTAA	4 cut(s)	302, 327, 405, 452
MslI	CAYNNNNRTG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	683
MvaI	CCWGG	1 cut(s)	683
MwoI	GCNNNNNNNGC	4 cut(s)	714, 750, 786, 822
NdeII	GATC	3 cut(s)	282, 310, 552
NsbI	TGCGCA	1 cut(s)	546
NspI	RCATGY	2 cut(s)	140, 430
PciI	ACATGT	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	63, 857
PkrI	GCNGC	1 cut(s)	376
PscI	ACATGT	1 cut(s)	426
PsiI	TTATAA	1 cut(s)	33
Psp1406I	AACGTT	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	681
PspGI	CCWGG	1 cut(s)	681
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	2 cut(s)	516, 560
RsaNI	GTAC	2 cut(s)	515, 559
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	4 cut(s)	302, 327, 405, 452
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	3 cut(s)	282, 310, 552
ScrFI	CCNGG	1 cut(s)	683
SfaNI	GCATC	4 cut(s)	99, 754, 790, 826
SfcI	CTRYAG	1 cut(s)	843
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	160, 519
SspMI	CTAG	3 cut(s)	11, 398, 563
StyD4I	CCNGG	1 cut(s)	681
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	2 cut(s)	180, 795
TaqII	GACCGA	2 cut(s)	723, 759
TasI	AATT	2 cut(s)	160, 519
TfiI	GAWTC	2 cut(s)	63, 857
Tru1I	TTAA	4 cut(s)	302, 327, 405, 452
Tru9I	TTAA	4 cut(s)	302, 327, 405, 452
TscAI	CASTG	3 cut(s)	24, 90, 96
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	3 cut(s)	133, 496, 870
TspRI	CASTG	3 cut(s)	24, 90, 96
XapI	RAATTY	1 cut(s)	519
XceI	RCATGY	2 cut(s)	140, 430
XspI	CTAG	3 cut(s)	11, 398, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.