Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG342800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCACCCCTTAATCTTCATCTTATGGCCTCTATATTTGGAATTATGGGTACCGTCGGCTCGTTCCTCGTTTACCTAGCTCCAATACCAACATTTTATTGGATTTACAAGAAAAAATCAACATATGGATTCCCATCTCTACCCTACTCAGTGGCATTGTTTAGCGCCATGTTGACGCTCTACTATGCCTTCCTCAAGACACATTCTATGATTATCATCGCGATCAATTCCCTTGGCATCTTAATTGAAACCGGGTACCTTGTATTGTTCATGATTTATGCACCACCAAAATCCAGGATCTTCACAGCAAAGTTTCTTGGCCTCTTTAATGTTTTGGGTTTTGGTTTGATCGTATTATGTACATGCCTAATCCCAAATGATTTTCTGCGGTTGAAAATTGTTGGGTGGGTTACTATCGTGTTTAATGTTGGTGTATTTGCTGCTCCTCTTACTATTCTGAAACACGTTATCAAAACAAAGAGTTGCGAGTTCATGTCATTCTCTTTGTCATTAAGCTTAACCCTATGTGCTGTCCTGTGGTTCTTCTATGGCCTTCTAATAAGAGATTTATTCATAGCGGCACCAAACGTGTTAGGGTTTGCGTTCGGAATTGTTCAGATGATTATGATCCTCGTCTACAGGAAGAAAACCAAGATAGCTGTCTTGACAGAATTCCGTCTAGGTGATCTGATACCAAGCACAAATATGGTTGCTGCTCCACTAAATGATGACATGACAGTAGCAATTGTCATTAATTCTCGACCGGTAGCTGGGGACGCAAAGAAGAGTTCTGAAACTGATGATCAGAATCCATTGGAGGGCCGGCCCAAAGGCAAGGCGACCTTGGCCGCTGCCTACGGCGTTATCTTGAGAAGGGGCTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

295

Amino Acids

32.54

Weight (kDa)

9.63

Isoelectric Point (pI)

30.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 97	1.2e-18	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 217	9.9e-26	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	50, 255
AccB1I	GGYRCC	4 cut(s)	4, 50, 255, 580
AccI	GTMKAC	1 cut(s)	636
AccII	CGCG	1 cut(s)	221
AciI	CCGC	3 cut(s)	388, 578, 849
AclWI	GGATC	2 cut(s)	305, 622
AcoI	YGGCCR	1 cut(s)	846
AcsI	RAATTY	1 cut(s)	671
AfaI	GTAC	3 cut(s)	52, 257, 361
AfiI	CCNNNNNNNGG	2 cut(s)	770, 818
AflIII	ACRYGT	2 cut(s)	463, 588
AgeI	ACCGGT	1 cut(s)	763
AgsI	TTSAA	2 cut(s)	248, 394
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	4 cut(s)	80, 516, 659, 770
AluI	AGCT	4 cut(s)	80, 516, 659, 770
AlwI	GGATC	2 cut(s)	305, 622
AoxI	GGCC	6 cut(s)	27, 319, 550, 820, 824, 846
ApeKI	GCWGC	3 cut(s)	440, 713, 851
ApoI	RAATTY	1 cut(s)	671
AseI	ATTAAT	1 cut(s)	753
AsiGI	ACCGGT	1 cut(s)	763
Asp718I	GGTACC	2 cut(s)	50, 255
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	820, 825
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	695
BanI	GGYRCC	4 cut(s)	4, 50, 255, 580
BanII	GRGCYC	1 cut(s)	881
BbvI	GCAGC	3 cut(s)	427, 700, 838
BccI	CCATC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	874
BciT130I	CCWGG	1 cut(s)	295
BclI	TGATCA	1 cut(s)	802
BcnI	CCSGG	1 cut(s)	253
BfaI	CTAG	2 cut(s)	77, 680
BfmI	CTRYAG	1 cut(s)	637
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	5 cut(s)	441, 579, 714, 849, 852
BlsI	GCNGC	5 cut(s)	442, 580, 715, 850, 853
Bme1390I	CCNGG	2 cut(s)	253, 295
BmgT120I	GGNCC	2 cut(s)	820, 825
BmiI	GGNNCC	4 cut(s)	6, 52, 257, 582
BmrFI	CCNGG	2 cut(s)	253, 295
BmsI	GCATC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	253
BsaBI	GATNNNNATC	4 cut(s)	133, 215, 626, 807
BsaJI	CCNNGG	2 cut(s)	232, 843
BsaWI	WCCGGW	1 cut(s)	763
Bsc4I	CCNNNNNNNGG	2 cut(s)	770, 818
Bse118I	RCCGGY	2 cut(s)	763, 822
Bse8I	GATNNNNATC	4 cut(s)	133, 215, 626, 807
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	2 cut(s)	232, 843
BseJI	GATNNNNATC	4 cut(s)	133, 215, 626, 807
BseLI	CCNNNNNNNGG	2 cut(s)	770, 818
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	3 cut(s)	427, 700, 838
BseYI	CCCAGC	1 cut(s)	770
Bsh1236I	CGCG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	764
BshFI	GGCC	6 cut(s)	29, 321, 552, 822, 826, 848
BshNI	GGYRCC	4 cut(s)	4, 50, 255, 580
BshTI	ACCGGT	1 cut(s)	763
BsiEI	CGRYCG	1 cut(s)	764
BsiSI	CCGG	3 cut(s)	252, 764, 823
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	2 cut(s)	770, 818
BsmFI	GGGAC	1 cut(s)	788
BsnI	GGCC	6 cut(s)	29, 321, 552, 822, 826, 848
Bsp1286I	GDGCHC	1 cut(s)	881
Bsp1407I	TGTACA	1 cut(s)	359
Bsp143I	GATC	6 cut(s)	222, 297, 348, 627, 685, 802
Bsp68I	TCGCGA	1 cut(s)	221
BspACI	CCGC	3 cut(s)	388, 578, 849
BspANI	GGCC	6 cut(s)	29, 321, 552, 822, 826, 848
BspCNI	CTCAG	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	221
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	4 cut(s)	6, 52, 257, 582
BspPI	GGATC	2 cut(s)	305, 622
BspT107I	GGYRCC	4 cut(s)	4, 50, 255, 580
BsrFI	RCCGGY	2 cut(s)	763, 822
BsrGI	TGTACA	1 cut(s)	359
BssAI	RCCGGY	2 cut(s)	763, 822
BssECI	CCNNGG	2 cut(s)	232, 843
BssMI	GATC	6 cut(s)	222, 297, 348, 627, 685, 802
BssT1I	CCWWGG	2 cut(s)	232, 843
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	2 cut(s)	55, 739
Bst6I	CTCTTC	1 cut(s)	779
BstAUI	TGTACA	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	824
BstDEI	CTNAG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	6 cut(s)	225, 300, 351, 630, 688, 805
BstMBI	GATC	6 cut(s)	222, 297, 348, 627, 685, 802
BstMCI	CGRYCG	1 cut(s)	764
BstMWI	GCNNNNNNNGC	2 cut(s)	776, 845
BstNI	CCWGG	1 cut(s)	295
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	251, 293
BstSFI	CTRYAG	1 cut(s)	637
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	3 cut(s)	427, 700, 838
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
BsuRI	GGCC	6 cut(s)	29, 321, 552, 822, 826, 848
BtgZI	GCGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	156
BtuMI	TCGCGA	1 cut(s)	221
Cac8I	GCNNGC	1 cut(s)	824
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	2 cut(s)	763, 822
Cfr13I	GGNCC	2 cut(s)	820, 825
CseI	GACGC	2 cut(s)	184, 785
Csp6I	GTAC	3 cut(s)	51, 256, 360
CspAI	ACCGGT	1 cut(s)	763
CviAII	CATG	5 cut(s)	169, 271, 363, 493, 733
CviQI	GTAC	3 cut(s)	51, 256, 360
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	6 cut(s)	224, 299, 350, 629, 687, 804
DpnII	GATC	6 cut(s)	222, 297, 348, 627, 685, 802
EaeI	YGGCCR	1 cut(s)	846
Eam1104I	CTCTTC	1 cut(s)	779
EarI	CTCTTC	1 cut(s)	779
Eco130I	CCWWGG	2 cut(s)	232, 843
Eco24I	GRGCYC	1 cut(s)	881
EcoRI	GAATTC	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	2 cut(s)	232, 843
EcoT38I	GRGCYC	1 cut(s)	881
ErhI	CCWWGG	2 cut(s)	232, 843
FaeI	CATG	5 cut(s)	172, 274, 366, 496, 736
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	5 cut(s)	168, 270, 362, 492, 732
FauNDI	CATATG	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	802
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	5 cut(s)	441, 579, 714, 849, 852
FriOI	GRGCYC	1 cut(s)	881
FseI	GGCCGGCC	1 cut(s)	826
Fsp4HI	GCNGC	5 cut(s)	441, 579, 714, 849, 852
FspBI	CTAG	2 cut(s)	77, 680
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	5 cut(s)	441, 579, 714, 849, 852
GsaI	CCCAGC	1 cut(s)	774
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	6 cut(s)	29, 321, 552, 822, 826, 848
HapII	CCGG	3 cut(s)	252, 764, 823
HgaI	GACGC	2 cut(s)	184, 785
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	5 cut(s)	172, 274, 366, 496, 736
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	2 cut(s)	129, 808
HpaII	CCGG	3 cut(s)	252, 764, 823
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	3 cut(s)	73, 174, 637
Hpy188I	TCNGA	6 cut(s)	459, 608, 618, 690, 793, 807
Hpy188III	TCNNGA	6 cut(s)	196, 220, 271, 664, 759, 868
Hpy8I	GTNNAC	3 cut(s)	73, 174, 637
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	3 cut(s)	199, 563, 867
HpyCH4III	ACNGT	2 cut(s)	55, 739
HpyCH4IV	ACGT	2 cut(s)	465, 588
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	776, 845
HpyF3I	CTNAG	1 cut(s)	148
HpySE526I	ACGT	2 cut(s)	465, 588
Hsp92II	CATG	5 cut(s)	172, 274, 366, 496, 736
HspAI	GCGC	1 cut(s)	165
KpnI	GGTACC	2 cut(s)	54, 259
KroI	GCCGGC	1 cut(s)	822
KroNI	GCCGGC	1 cut(s)	824
Ksp22I	TGATCA	1 cut(s)	802
Kzo9I	GATC	6 cut(s)	222, 297, 348, 627, 685, 802
LmnI	GCTCC	3 cut(s)	85, 448, 721
LpnPI	CCDG	8 cut(s)	265, 280, 307, 548, 625, 756, 777, 836
Lsp1109I	GCAGC	3 cut(s)	427, 700, 838
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	2 cut(s)	77, 680
MaeII	ACGT	2 cut(s)	465, 588
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	6 cut(s)	224, 299, 350, 629, 687, 804
MboI	GATC	6 cut(s)	222, 297, 348, 627, 685, 802
MboII	GAAGA	5 cut(s)	8, 292, 535, 655, 796
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	881
MluCI	AATT	9 cut(s)	42, 226, 243, 396, 609, 671, 744, 754, 882
MnlI	CCTC	7 cut(s)	40, 77, 203, 332, 456, 641, 811
MroNI	GCCGGC	1 cut(s)	822
MseI	TTAA	7 cut(s)	12, 242, 327, 423, 512, 518, 753
MslI	CAYNNNNRTG	1 cut(s)	704
MspA1I	CMGCKG	1 cut(s)	851
MspI	CCGG	3 cut(s)	252, 764, 823
MspR9I	CCNGG	2 cut(s)	253, 295
MunI	CAATTG	1 cut(s)	744
MvaI	CCWGG	1 cut(s)	295
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	776, 845
NaeI	GCCGGC	1 cut(s)	824
NciI	CCSGG	1 cut(s)	253
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	6 cut(s)	222, 297, 348, 627, 685, 802
NgoMIV	GCCGGC	1 cut(s)	822
NlaIII	CATG	5 cut(s)	172, 274, 366, 496, 736
NlaIV	GGNNCC	4 cut(s)	6, 52, 257, 582
NruI	TCGCGA	1 cut(s)	221
NspI	RCATGY	1 cut(s)	366
PagI	TCATGA	1 cut(s)	270
PdiI	GCCGGC	1 cut(s)	824
PfeI	GAWTC	2 cut(s)	129, 808
PfoI	TCCNGGA	1 cut(s)	293
PinAI	ACCGGT	1 cut(s)	763
PkrI	GCNGC	5 cut(s)	442, 580, 715, 850, 853
PshBI	ATTAAT	1 cut(s)	753
Psp6I	CCWGG	1 cut(s)	293
PspFI	CCCAGC	1 cut(s)	770
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	4 cut(s)	6, 52, 257, 582
PspPI	GGNCC	2 cut(s)	820, 825
PsuI	RGATCY	1 cut(s)	297
RigI	GGCCGGCC	1 cut(s)	826
RruI	TCGCGA	1 cut(s)	221
RsaI	GTAC	3 cut(s)	52, 257, 361
RsaNI	GTAC	3 cut(s)	51, 256, 360
RseI	CAYNNNNRTG	1 cut(s)	704
SaqAI	TTAA	7 cut(s)	12, 242, 327, 423, 512, 518, 753
SatI	GCNGC	5 cut(s)	441, 579, 714, 849, 852
Sau3AI	GATC	6 cut(s)	222, 297, 348, 627, 685, 802
Sau96I	GGNCC	2 cut(s)	820, 825
ScrFI	CCNGG	2 cut(s)	253, 295
SduI	GDGCHC	1 cut(s)	881
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	637
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	2 cut(s)	194, 868
SmoI	CTYRAG	2 cut(s)	194, 868
Sse9I	AATT	9 cut(s)	42, 226, 243, 396, 609, 671, 744, 754, 882
SsiI	CCGC	3 cut(s)	388, 578, 849
SspMI	CTAG	2 cut(s)	77, 680
StyD4I	CCNGG	2 cut(s)	251, 293
StyI	CCWWGG	2 cut(s)	232, 843
TaaI	ACNGT	2 cut(s)	55, 739
TaiI	ACGT	2 cut(s)	468, 591
TaqI	TCGA	1 cut(s)	760
TasI	AATT	9 cut(s)	42, 226, 243, 396, 609, 671, 744, 754, 882
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	2 cut(s)	581, 851
TfiI	GAWTC	2 cut(s)	129, 808
Tru1I	TTAA	7 cut(s)	12, 242, 327, 423, 512, 518, 753
Tru9I	TTAA	7 cut(s)	12, 242, 327, 423, 512, 518, 753
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	3 cut(s)	440, 713, 851
TspDTI	ATGAA	4 cut(s)	8, 259, 481, 562
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	1 cut(s)	156
VspI	ATTAAT	1 cut(s)	753
XapI	RAATTY	1 cut(s)	671
XceI	RCATGY	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	96
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	2 cut(s)	77, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.