Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006513.1

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Forward (+)

31285 .. 32796

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006513.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atggcaccccttaatcttcatcttatggcctctatatttggaattctgggtaccgtcggctcgttcctcgtttacctagctccaataccaacattttattggatttacaagaaaaaatcaacatatggattcccatctctaccctactcagtggcattgtttagcgccatgttgacgctctactatgccttcctcaagacacattctatgattatcatcgctatcaattcccttggcatcttaattgaaaccgggtaccttgtattgttcatgatttatgcaccaccaaaatctaggatcttcacagcaaagtttcttggcctctttaatgttttgggttttggtttgatcgtattatgtacatgcctaatcccaaatgattttctgcggttgaaaattgttgggtgggttactatcgtgtttaatgttggtgtatttgctgctcctcttactattctgaaacacgttatcaaaacaaagagttgcgagttcatgtcattctctttgtcattaagcttaaccctatgtgctgtcctatggttcttctatggccttctaataagagatttattcatagcggcaccaaacgtgttagggtttatattcgggattgtgcagatgatgatgttctacatctaccggaagagcacaaggaaagctggtttaccgatagatagtctaaatgatcagacactaagcacaaacaggcgggttgctgttccggaaaatgctgacatgagagtagcaatgacaataattgacattggtactcagattcagttgaaagcaggggacgcaaagaagagttctgaaactgatgatcatgagaatcaactaccaaagcaggggcggccggaaggcaaggggtcgcccaccaccgccttgggactcacactcagaagggcctcaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

304

Amino Acids

33.78

Weight (kDa)

9.63

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	50, 255
AccB1I	GGYRCC	4 cut(s)	4, 50, 255, 580
AccIII	TCCGGA	1 cut(s)	721
AciI	CCGC	5 cut(s)	388, 578, 709, 850, 879
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	851
AcsI	RAATTY	1 cut(s)	42
AfaI	GTAC	4 cut(s)	52, 257, 361, 769
AfiI	CCNNNNNNNGG	1 cut(s)	845
AflIII	ACRYGT	2 cut(s)	463, 588
AgsI	TTSAA	3 cut(s)	248, 394, 784
AluBI	AGCT	3 cut(s)	80, 516, 659
AluI	AGCT	3 cut(s)	80, 516, 659
Alw21I	GWGCWC	1 cut(s)	650
AlwI	GGATC	1 cut(s)	305
Aor13HI	TCCGGA	1 cut(s)	721
AoxI	GGCC	5 cut(s)	27, 319, 550, 851, 903
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	42
Asp718I	GGTACC	2 cut(s)	50, 255
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	903
AsuC2I	CCSGG	1 cut(s)	253
BanI	GGYRCC	4 cut(s)	4, 50, 255, 580
Bbv12I	GWGCWC	1 cut(s)	650
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	1 cut(s)	142
BclI	TGATCA	2 cut(s)	685, 820
BcnI	CCSGG	1 cut(s)	253
BfaI	CTAG	2 cut(s)	77, 294
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	3 cut(s)	441, 579, 851
BlsI	GCNGC	3 cut(s)	442, 580, 852
Bme1390I	CCNGG	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	903
BmiI	GGNNCC	4 cut(s)	6, 52, 257, 582
BmrFI	CCNGG	1 cut(s)	253
BmsI	GCATC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	253
BsaBI	GATNNNNATC	2 cut(s)	133, 215
BsaJI	CCNNGG	2 cut(s)	232, 882
BsaWI	WCCGGW	2 cut(s)	639, 721
Bsc4I	CCNNNNNNNGG	1 cut(s)	845
Bse3DI	GCAATG	1 cut(s)	753
Bse8I	GATNNNNATC	2 cut(s)	133, 215
BseAI	TCCGGA	1 cut(s)	721
BseDI	CCNNGG	2 cut(s)	232, 882
BseJI	GATNNNNATC	2 cut(s)	133, 215
BseLI	CCNNNNNNNGG	1 cut(s)	845
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	3 cut(s)	162, 785, 910
BseRI	GAGGAG	1 cut(s)	435
BseX3I	CGGCCG	1 cut(s)	851
BseXI	GCAGC	1 cut(s)	427
BsgI	GTGCAG	1 cut(s)	635
Bsh1285I	CGRYCG	1 cut(s)	854
BshFI	GGCC	5 cut(s)	29, 321, 552, 853, 905
BshNI	GGYRCC	4 cut(s)	4, 50, 255, 580
BsiEI	CGRYCG	1 cut(s)	854
BsiHKAI	GWGCWC	1 cut(s)	650
BsiSI	CCGG	4 cut(s)	252, 640, 722, 854
BslFI	GGGAC	2 cut(s)	806, 900
BslI	CCNNNNNNNGG	1 cut(s)	845
BsmFI	GGGAC	2 cut(s)	806, 900
BsnI	GGCC	5 cut(s)	29, 321, 552, 853, 905
Bsp1286I	GDGCHC	1 cut(s)	650
Bsp13I	TCCGGA	1 cut(s)	721
Bsp1407I	TGTACA	1 cut(s)	359
Bsp143I	GATC	4 cut(s)	297, 348, 685, 820
BspACI	CCGC	5 cut(s)	388, 578, 709, 850, 879
BspANI	GGCC	5 cut(s)	29, 321, 552, 853, 905
BspCNI	CTCAG	3 cut(s)	161, 784, 909
BspEI	TCCGGA	1 cut(s)	721
BspHI	TCATGA	2 cut(s)	270, 823
BspLI	GGNNCC	4 cut(s)	6, 52, 257, 582
BspPI	GGATC	1 cut(s)	305
BspQI	GCTCTTC	1 cut(s)	638
BspT107I	GGYRCC	4 cut(s)	4, 50, 255, 580
BsrDI	GCAATG	1 cut(s)	753
BsrGI	TGTACA	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	232, 882
BssMI	GATC	4 cut(s)	297, 348, 685, 820
BssT1I	CCWWGG	2 cut(s)	232, 882
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	2 cut(s)	638, 797
BstAUI	TGTACA	1 cut(s)	359
BstDEI	CTNAG	4 cut(s)	148, 695, 771, 896
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	4 cut(s)	300, 351, 688, 823
BstMBI	GATC	4 cut(s)	297, 348, 685, 820
BstMCI	CGRYCG	1 cut(s)	854
BstMWI	GCNNNNNNNGC	2 cut(s)	794, 850
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	883
BstYI	RGATCY	1 cut(s)	297
BstZI	CGGCCG	1 cut(s)	851
BsuRI	GGCC	5 cut(s)	29, 321, 552, 853, 905
BtgZI	GCGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	156
CciI	TCATGA	2 cut(s)	270, 823
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	903
CseI	GACGC	2 cut(s)	184, 803
Csp6I	GTAC	4 cut(s)	51, 256, 360, 768
CviAII	CATG	6 cut(s)	169, 271, 363, 493, 736, 824
CviJI	RGCY	9 cut(s)	29, 60, 80, 321, 516, 552, 659, 853, 905
CviKI_1	RGCY	9 cut(s)	29, 60, 80, 321, 516, 552, 659, 853, 905
CviQI	GTAC	4 cut(s)	51, 256, 360, 768
DdeI	CTNAG	4 cut(s)	148, 695, 771, 896
DpnI	GATC	4 cut(s)	299, 350, 687, 822
DpnII	GATC	4 cut(s)	297, 348, 685, 820
EaeI	YGGCCR	1 cut(s)	851
EagI	CGGCCG	1 cut(s)	851
Eam1104I	CTCTTC	2 cut(s)	638, 797
EarI	CTCTTC	2 cut(s)	638, 797
EclXI	CGGCCG	1 cut(s)	851
Eco130I	CCWWGG	2 cut(s)	232, 882
Eco52I	CGGCCG	1 cut(s)	851
EcoO109I	RGGNCCY	1 cut(s)	903
EcoRI	GAATTC	1 cut(s)	42
EcoT14I	CCWWGG	2 cut(s)	232, 882
ErhI	CCWWGG	2 cut(s)	232, 882
FaeI	CATG	6 cut(s)	172, 274, 366, 496, 739, 827
FaqI	GGGAC	2 cut(s)	806, 900
FatI	CATG	6 cut(s)	168, 270, 362, 492, 735, 823
FauI	CCCGC	1 cut(s)	702
FauNDI	CATATG	1 cut(s)	124
FbaI	TGATCA	2 cut(s)	685, 820
Fnu4HI	GCNGC	3 cut(s)	441, 579, 851
Fsp4HI	GCNGC	3 cut(s)	441, 579, 851
FspBI	CTAG	2 cut(s)	77, 294
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	3 cut(s)	441, 579, 851
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	5 cut(s)	29, 321, 552, 853, 905
HapII	CCGG	4 cut(s)	252, 640, 722, 854
HgaI	GACGC	2 cut(s)	184, 803
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	6 cut(s)	172, 274, 366, 496, 739, 827
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	4 cut(s)	129, 775, 829, 888
HpaII	CCGG	4 cut(s)	252, 640, 722, 854
Hpy166II	GTNNAC	3 cut(s)	73, 174, 665
Hpy188I	TCNGA	5 cut(s)	459, 690, 774, 811, 899
Hpy188III	TCNNGA	5 cut(s)	196, 271, 607, 722, 824
Hpy8I	GTNNAC	3 cut(s)	73, 174, 665
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	4 cut(s)	199, 563, 851, 894
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	2 cut(s)	465, 588
HpyCH4V	TGCA	2 cut(s)	281, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	794, 850
HpyF3I	CTNAG	4 cut(s)	148, 695, 771, 896
HpySE526I	ACGT	2 cut(s)	465, 588
Hsp92II	CATG	6 cut(s)	172, 274, 366, 496, 739, 827
HspAI	GCGC	1 cut(s)	165
Kpn2I	TCCGGA	1 cut(s)	721
KpnI	GGTACC	2 cut(s)	54, 259
Ksp22I	TGATCA	2 cut(s)	685, 820
Kzo9I	GATC	4 cut(s)	297, 348, 685, 820
LguI	GCTCTTC	1 cut(s)	638
LmnI	GCTCC	2 cut(s)	85, 448
LpnPI	CCDG	9 cut(s)	32, 265, 645, 653, 691, 735, 774, 830, 867
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	2 cut(s)	77, 294
MaeII	ACGT	2 cut(s)	465, 588
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	4 cut(s)	299, 350, 687, 822
MboI	GATC	4 cut(s)	297, 348, 685, 820
MboII	GAAGA	5 cut(s)	8, 292, 535, 655, 814
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	650
MluCI	AATT	5 cut(s)	42, 226, 243, 396, 756
MlyI	GAGTC	1 cut(s)	882
MnlI	CCTC	5 cut(s)	40, 77, 203, 332, 456
MroI	TCCGGA	1 cut(s)	721
MseI	TTAA	6 cut(s)	12, 242, 327, 423, 512, 518
MspI	CCGG	4 cut(s)	252, 640, 722, 854
MspR9I	CCNGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	2 cut(s)	794, 850
NciI	CCSGG	1 cut(s)	253
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	4 cut(s)	297, 348, 685, 820
NlaIII	CATG	6 cut(s)	172, 274, 366, 496, 739, 827
NlaIV	GGNNCC	4 cut(s)	6, 52, 257, 582
NspI	RCATGY	1 cut(s)	366
PagI	TCATGA	2 cut(s)	270, 823
PciSI	GCTCTTC	1 cut(s)	638
PfeI	GAWTC	3 cut(s)	129, 775, 829
PkrI	GCNGC	3 cut(s)	442, 580, 852
PleI	GAGTC	1 cut(s)	882
PpsI	GAGTC	1 cut(s)	882
PspN4I	GGNNCC	4 cut(s)	6, 52, 257, 582
PspPI	GGNCC	1 cut(s)	903
PsuI	RGATCY	1 cut(s)	297
RsaI	GTAC	4 cut(s)	52, 257, 361, 769
RsaNI	GTAC	4 cut(s)	51, 256, 360, 768
SapI	GCTCTTC	1 cut(s)	638
SaqAI	TTAA	6 cut(s)	12, 242, 327, 423, 512, 518
SatI	GCNGC	3 cut(s)	441, 579, 851
Sau3AI	GATC	4 cut(s)	297, 348, 685, 820
Sau96I	GGNCC	1 cut(s)	903
SchI	GAGTC	1 cut(s)	882
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	650
SetI	ASST	7 cut(s)	78, 82, 261, 468, 518, 591, 661
SfaNI	GCATC	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	5 cut(s)	42, 226, 243, 396, 756
SsiI	CCGC	5 cut(s)	388, 578, 709, 850, 879
SspMI	CTAG	2 cut(s)	77, 294
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	2 cut(s)	232, 882
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	2 cut(s)	468, 591
TasI	AATT	5 cut(s)	42, 226, 243, 396, 756
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	2 cut(s)	581, 853
TfiI	GAWTC	3 cut(s)	129, 775, 829
Tru1I	TTAA	6 cut(s)	12, 242, 327, 423, 512, 518
Tru9I	TTAA	6 cut(s)	12, 242, 327, 423, 512, 518
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	1 cut(s)	440
TspDTI	ATGAA	4 cut(s)	8, 259, 481, 562
TspRI	CASTG	1 cut(s)	156
XapI	RAATTY	1 cut(s)	42
XceI	RCATGY	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	2 cut(s)	96, 880
XspI	CTAG	2 cut(s)	77, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.