Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

54589341 .. 54592823

Gene Structure 3483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG343200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTTAATGTTCTACTATGCTTACATCAAAGAAAATGCTTATTTGCTGTTGGGAATCAATTCCTTTGGCTCCATCATAGAAACTATATACCTTATAGTTTACATGATTTACGCACCATCAAATTCCAGGATTTTCACGGCAAAGCTGCTAGTCCTGTTTAACTTTTTGGCTTATGGGGTGATCGTAGGAGTTACATACCAAATCCCAAATCCTCTTCTGCGGCTTAAAGTTGTTGGATGGATAAATGTCGTCTTCTCTGTCTGTGTATTTGCTGCCCCTCTAAGTATTCTGAGACTGGTTATTAGAACAAAGAGTGTGGAATACATGTCATTCCCTCTATCGTTCTGCTTAACCATTTGTGCTGTCATGTGGTTCTTCTATGGCCTTTTGATCAAGGATTTATTTGTAGCGGCGCCAAATATCTTAGGGTTTACATTTGGGATGGCTCAGATGATTTTGTTCCTGGTTTACAAGAACACTAAGAGACCCATCTTACCAGAATTCAAACTAAACGAGATGCCAAACAGAGTTGCTGCAGCAAATGATGAAATAATAGTAGCATGCGAAAGTACTACACAAACTGGGCTGAAAAATGGGGAAGGGGAGAATAAGACTAGTTGTGAAGCTGATGATGATCATGAGAATCAATCACAGACCACTGAGACCAGTACTGTTACTAATGATATTGAGACAAGTCCTGAATCAATTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

237

Amino Acids

26.65

Weight (kDa)

5.09

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	77 - 161	8.9e-28	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	412
AciI	CCGC	2 cut(s)	220, 410
AcsI	RAATTY	2 cut(s)	121, 500
AcyI	GRCGYC	1 cut(s)	413
AfaI	GTAC	2 cut(s)	571, 670
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	1 cut(s)	505
AhlI	ACTAGT	1 cut(s)	614
AjnI	CCWGG	2 cut(s)	125, 462
AluBI	AGCT	2 cut(s)	145, 626
AluI	AGCT	2 cut(s)	145, 626
Alw26I	GTCTC	4 cut(s)	286, 478, 656, 683
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	4 cut(s)	145, 272, 533, 536
ApoI	RAATTY	2 cut(s)	121, 500
Asp700I	GAANNNNTTC	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	412
BbsI	GAAGAC	1 cut(s)	244
BbvI	GCAGC	4 cut(s)	132, 259, 520, 548
BccI	CCATC	5 cut(s)	80, 124, 231, 436, 497
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	2 cut(s)	127, 464
BclI	TGATCA	2 cut(s)	390, 634
BcoDI	GTCTC	4 cut(s)	286, 478, 656, 683
BcuI	ACTAGT	1 cut(s)	614
BfaI	CTAG	2 cut(s)	149, 615
BfmI	CTRYAG	1 cut(s)	534
BfoI	RGCGCY	1 cut(s)	416
BisI	GCNGC	6 cut(s)	146, 221, 273, 411, 534, 537
BlsI	GCNGC	6 cut(s)	147, 222, 274, 412, 535, 538
BmcAI	AGTACT	2 cut(s)	571, 670
Bme1390I	CCNGG	2 cut(s)	127, 464
BmiI	GGNNCC	2 cut(s)	70, 414
BmrFI	CCNGG	2 cut(s)	127, 464
BmrI	ACTGGG	1 cut(s)	591
BmsI	GCATC	1 cut(s)	507
BmuI	ACTGGG	1 cut(s)	591
BpiI	GAAGAC	1 cut(s)	244
BsaBI	GATNNNNATC	1 cut(s)	633
BsaHI	GRCGYC	1 cut(s)	413
BsaI	GGTCTC	2 cut(s)	478, 656
Bse1I	ACTGG	3 cut(s)	300, 586, 666
Bse8I	GATNNNNATC	1 cut(s)	633
BseBI	CCWGG	2 cut(s)	127, 464
BseGI	GGATG	2 cut(s)	242, 447
BseJI	GATNNNNATC	1 cut(s)	633
BseMII	CTCAG	3 cut(s)	281, 461, 651
BseNI	ACTGG	3 cut(s)	300, 586, 666
BseXI	GCAGC	4 cut(s)	132, 259, 520, 548
BshFI	GGCC	1 cut(s)	384
BshNI	GGYRCC	1 cut(s)	412
BsmAI	GTCTC	4 cut(s)	286, 478, 656, 683
BsnI	GGCC	1 cut(s)	384
Bso31I	GGTCTC	2 cut(s)	478, 656
Bsp143I	GATC	3 cut(s)	180, 390, 634
BspACI	CCGC	2 cut(s)	220, 410
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	3 cut(s)	282, 460, 652
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	2 cut(s)	70, 414
BspMAI	CTGCAG	1 cut(s)	538
BspT107I	GGYRCC	1 cut(s)	412
BspTNI	GGTCTC	2 cut(s)	478, 656
BsrI	ACTGG	3 cut(s)	300, 586, 666
BssMI	GATC	3 cut(s)	180, 390, 634
BssNI	GRCGYC	1 cut(s)	413
Bst2UI	CCWGG	2 cut(s)	127, 464
Bst4CI	ACNGT	1 cut(s)	673
Bst6I	CTCTTC	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	562
BstDEI	CTNAG	6 cut(s)	281, 290, 424, 447, 480, 660
BstF5I	GGATG	2 cut(s)	242, 447
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	3 cut(s)	183, 393, 637
BstMAI	GTCTC	4 cut(s)	286, 478, 656, 683
BstMBI	GATC	3 cut(s)	180, 390, 634
BstNI	CCWGG	2 cut(s)	127, 464
BstNSI	RCATGY	2 cut(s)	328, 564
BstSCI	CCNGG	2 cut(s)	125, 462
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	4 cut(s)	132, 259, 520, 548
BstV2I	GAAGAC	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	242, 447
BtsIMutI	CAGTG	1 cut(s)	657
Cac8I	GCNNGC	1 cut(s)	562
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	1 cut(s)	415
Csp6I	GTAC	2 cut(s)	570, 669
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	5 cut(s)	103, 325, 367, 561, 638
CviJI	RGCY	8 cut(s)	69, 145, 170, 223, 384, 446, 586, 626
CviKI_1	RGCY	8 cut(s)	69, 145, 170, 223, 384, 446, 586, 626
CviQI	GTAC	2 cut(s)	570, 669
DdeI	CTNAG	6 cut(s)	281, 290, 424, 447, 480, 660
DinI	GGCGCC	1 cut(s)	414
DpnI	GATC	3 cut(s)	182, 392, 636
DpnII	GATC	3 cut(s)	180, 390, 634
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco31I	GGTCTC	2 cut(s)	478, 656
EcoRI	GAATTC	1 cut(s)	500
EcoRII	CCWGG	2 cut(s)	125, 462
EgeI	GGCGCC	1 cut(s)	414
EheI	GGCGCC	1 cut(s)	414
FaeI	CATG	5 cut(s)	106, 328, 370, 564, 641
FatI	CATG	5 cut(s)	102, 324, 366, 560, 637
FbaI	TGATCA	2 cut(s)	390, 634
Fnu4HI	GCNGC	6 cut(s)	146, 221, 273, 411, 534, 537
FokI	GGATG	2 cut(s)	249, 454
Fsp4HI	GCNGC	6 cut(s)	146, 221, 273, 411, 534, 537
FspBI	CTAG	2 cut(s)	149, 615
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	6 cut(s)	146, 221, 273, 411, 534, 537
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	384
HhaI	GCGC	1 cut(s)	415
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	5 cut(s)	106, 328, 370, 564, 641
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HinfI	GANTC	3 cut(s)	54, 643, 701
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	3 cut(s)	100, 432, 469
Hpy188I	TCNGA	2 cut(s)	291, 450
Hpy188III	TCNNGA	2 cut(s)	638, 698
Hpy8I	GTNNAC	3 cut(s)	100, 432, 469
HpyAV	CCTTC	1 cut(s)	593
HpyCH4III	ACNGT	1 cut(s)	673
HpyCH4V	TGCA	1 cut(s)	536
HpyF3I	CTNAG	6 cut(s)	281, 290, 424, 447, 480, 660
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	5 cut(s)	106, 328, 370, 564, 641
HspAI	GCGC	1 cut(s)	413
KasI	GGCGCC	1 cut(s)	412
Ksp22I	TGATCA	2 cut(s)	390, 634
Kzo9I	GATC	3 cut(s)	180, 390, 634
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	9 cut(s)	112, 139, 167, 281, 449, 476, 510, 567, 679
Lsp1109I	GCAGC	4 cut(s)	132, 259, 520, 548
LweI	GCATC	1 cut(s)	507
MaeI	CTAG	2 cut(s)	149, 615
MaeIII	GTNAC	2 cut(s)	190, 673
MalI	GATC	3 cut(s)	182, 392, 636
MboI	GATC	3 cut(s)	180, 390, 634
MboII	GAAGA	3 cut(s)	206, 244, 367
MfeI	CAATTG	1 cut(s)	705
MluCI	AATT	4 cut(s)	58, 121, 500, 705
Mly113I	GGCGCC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	3 cut(s)	222, 288, 345
MroXI	GAANNNNTTC	1 cut(s)	58
MseI	TTAA	4 cut(s)	5, 159, 225, 350
MspR9I	CCNGG	2 cut(s)	127, 464
MunI	CAATTG	1 cut(s)	705
MvaI	CCWGG	2 cut(s)	127, 464
NarI	GGCGCC	1 cut(s)	413
NdeII	GATC	3 cut(s)	180, 390, 634
NlaIII	CATG	5 cut(s)	106, 328, 370, 564, 641
NlaIV	GGNNCC	2 cut(s)	70, 414
NspI	RCATGY	2 cut(s)	328, 564
PaeI	GCATGC	1 cut(s)	564
PagI	TCATGA	1 cut(s)	637
PciI	ACATGT	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	58
PfeI	GAWTC	3 cut(s)	54, 643, 701
PfoI	TCCNGGA	1 cut(s)	125
PkrI	GCNGC	6 cut(s)	147, 222, 274, 412, 535, 538
PluTI	GGCGCC	1 cut(s)	416
PscI	ACATGT	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	125, 462
PspGI	CCWGG	2 cut(s)	125, 462
PspN4I	GGNNCC	2 cut(s)	70, 414
PstI	CTGCAG	1 cut(s)	538
RsaI	GTAC	2 cut(s)	571, 670
RsaNI	GTAC	2 cut(s)	570, 669
SaqAI	TTAA	4 cut(s)	5, 159, 225, 350
SatI	GCNGC	6 cut(s)	146, 221, 273, 411, 534, 537
Sau3AI	GATC	3 cut(s)	180, 390, 634
ScaI	AGTACT	2 cut(s)	571, 670
ScrFI	CCNGG	2 cut(s)	127, 464
SetI	ASST	3 cut(s)	93, 147, 628
SfaNI	GCATC	1 cut(s)	507
SfcI	CTRYAG	1 cut(s)	534
SfoI	GGCGCC	1 cut(s)	414
SpeI	ACTAGT	1 cut(s)	614
SphI	GCATGC	1 cut(s)	564
Sse9I	AATT	4 cut(s)	58, 121, 500, 705
SsiI	CCGC	2 cut(s)	220, 410
SspDI	GGCGCC	1 cut(s)	412
SspMI	CTAG	2 cut(s)	149, 615
StyD4I	CCNGG	2 cut(s)	125, 462
TaaI	ACNGT	1 cut(s)	673
TasI	AATT	4 cut(s)	58, 121, 500, 705
TatI	WGTACW	2 cut(s)	569, 668
TauI	GCSGC	2 cut(s)	223, 413
TfiI	GAWTC	3 cut(s)	54, 643, 701
Tru1I	TTAA	4 cut(s)	5, 159, 225, 350
Tru9I	TTAA	4 cut(s)	5, 159, 225, 350
TscAI	CASTG	1 cut(s)	664
TseI	GCWGC	4 cut(s)	145, 272, 533, 536
TspDTI	ATGAA	1 cut(s)	561
TspRI	CASTG	1 cut(s)	664
XapI	RAATTY	2 cut(s)	121, 500
XceI	RCATGY	2 cut(s)	328, 564
XmnI	GAANNNNTTC	1 cut(s)	58
XspI	CTAG	2 cut(s)	149, 615
ZrmI	AGTACT	2 cut(s)	571, 670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.