Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

20244213 .. 20246889

Gene Structure 2677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24901.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCAGAAAACTGAAGACAAGCTCTCTGAGTTTTTGAAGTGTGCCCTCAAAAGCCCCTCAAATTCTCTGAAGTGCTTCAGTAATTCATTCAGGCCAACAATGGCAGCTCCTGATCTTCATACCCTGGCCTCTGTTTTTGGCATATTAGGTACCTCCGTCTCCTTCCTCGTCTTACTAGCCCCACTCTTGACATTTTATGAGATATACAAGAGAAAATCTGCAGACGGGTTCCAATCTTTACCATATTCAGTTGCTCTGTTCAGTGCAATGTTAATGTTATACTATGCCTACTTGAAAACAAATTCTCCTTTGCTCTTGGGAATTAATACATTTGGCTCCATCATGGAAACTATATACCTTATAGTTTACATGATCTATGCACCCTCCAAACCCAGGATTTTCACGGCAAAACTGTTGGCCTTGTTCAATATTTTGGCATATGGGGTGATAGTAGCTATCACTTACCAAATCCCAAATCGTTTCCTGCAGATTAAAGTCGTTGGATGCATCAATGTCATCTTCTCCGTCTGCGTTTTTGCTGCACCACTTGGCATTCTGAGGCTGGTTGTTAAAACGAAGAGTACGGAATACATGTCTTTGCCACTATCATTGTGCTTGACTCTTTGTGCTATCATGTGGTTCTGCTATGGGATATTGATCAAGGATTTGTTTGTAGCGGCCCCAAATATCTTAGGGCTTACATTTGGAATGGCGCAGATGATTTTGTTCGTGGTTTACAGGAACACCCAGAAGCCCATCTTACCAGAATTCAAACTCAACGAGATGCCAAACAGAGTTGCTGCAGCAAGTGATGAAGTAATAGTAGTGAAATGCGAAACTGAGATGAAAACAGGTGAGGGGGAGAATAAGCAGACTACTTGTGAAGCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

298

Amino Acids

33.04

Weight (kDa)

8.96

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	45 - 130	1.7e-18	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	166 - 250	4.9e-26	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	149
AccB1I	GGYRCC	1 cut(s)	149
AciI	CCGC	1 cut(s)	677
AcsI	RAATTY	3 cut(s)	61, 301, 767
AcuI	CTGAAG	3 cut(s)	33, 61, 89
AfaI	GTAC	2 cut(s)	151, 583
AfiI	CCNNNNNNNGG	1 cut(s)	393
AflIII	ACRYGT	1 cut(s)	591
AgsI	TTSAA	4 cut(s)	37, 295, 427, 772
AjnI	CCWGG	2 cut(s)	123, 392
AluBI	AGCT	5 cut(s)	22, 107, 455, 887, 891
AluI	AGCT	5 cut(s)	22, 107, 455, 887, 891
Alw26I	GTCTC	1 cut(s)	163
AlwNI	CAGNNNCTG	1 cut(s)	110
AoxI	GGCC	4 cut(s)	92, 126, 417, 678
ApeKI	GCWGC	4 cut(s)	104, 539, 800, 803
ApoI	RAATTY	3 cut(s)	61, 301, 767
AseI	ATTAAT	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	1 cut(s)	679
AsuHPI	GGTGA	2 cut(s)	457, 866
AsuNHI	GCTAGC	1 cut(s)	887
BaeGI	GKGCMC	1 cut(s)	46
BaeI	ACNNNNGTAYC	2 cut(s)	141, 174
BanI	GGYRCC	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	4 cut(s)	116, 526, 787, 815
BccI	CCATC	2 cut(s)	347, 764
BceAI	ACGGC	1 cut(s)	420
BciT130I	CCWGG	2 cut(s)	125, 394
BclI	TGATCA	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	2 cut(s)	176, 888
BfmI	CTRYAG	3 cut(s)	219, 485, 801
BisI	GCNGC	5 cut(s)	105, 540, 678, 801, 804
BlsI	GCNGC	5 cut(s)	106, 541, 679, 802, 805
Bme1390I	CCNGG	2 cut(s)	125, 394
BmgT120I	GGNCC	1 cut(s)	679
BmiI	GGNNCC	4 cut(s)	151, 230, 337, 681
BmrFI	CCNGG	2 cut(s)	125, 394
BmsI	GCATC	3 cut(s)	494, 516, 774
BmtI	GCTAGC	1 cut(s)	891
BpiI	GAAGAC	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	656
BsaJI	CCNNGG	2 cut(s)	123, 392
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	656
BseBI	CCWGG	2 cut(s)	125, 394
BseDI	CCNNGG	2 cut(s)	123, 392
BseGI	GGATG	1 cut(s)	509
BseJI	GATNNNNATC	1 cut(s)	656
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	3 cut(s)	18, 548, 831
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	4 cut(s)	116, 526, 787, 815
BsgI	GTGCAG	1 cut(s)	525
BshFI	GGCC	4 cut(s)	94, 128, 419, 680
BshNI	GGYRCC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsmI	GAATGC	1 cut(s)	552
BsnI	GGCC	4 cut(s)	94, 128, 419, 680
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	112, 372, 657
BspACI	CCGC	1 cut(s)	677
BspANI	GGCC	4 cut(s)	94, 128, 419, 680
BspCNI	CTCAG	3 cut(s)	19, 549, 832
BspLI	GGNNCC	4 cut(s)	151, 230, 337, 681
BspMAI	CTGCAG	3 cut(s)	223, 489, 805
BspOI	GCTAGC	1 cut(s)	891
BspT107I	GGYRCC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	123, 392
BssMI	GATC	3 cut(s)	112, 372, 657
Bst2UI	CCWGG	2 cut(s)	125, 394
Bst4CI	ACNGT	1 cut(s)	414
Bst6I	CTCTTC	1 cut(s)	572
BstC8I	GCNNGC	1 cut(s)	889
BstDEI	CTNAG	4 cut(s)	27, 557, 691, 840
BstF5I	GGATG	1 cut(s)	509
BstHHI	GCGC	1 cut(s)	715
BstKTI	GATC	3 cut(s)	115, 375, 660
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	3 cut(s)	112, 372, 657
BstNI	CCWGG	2 cut(s)	125, 394
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	2 cut(s)	123, 392
BstSFI	CTRYAG	3 cut(s)	219, 485, 801
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	4 cut(s)	116, 526, 787, 815
BstV2I	GAAGAC	1 cut(s)	21
BsuRI	GGCC	4 cut(s)	94, 128, 419, 680
BtsCI	GGATG	1 cut(s)	509
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	889
CaiI	CAGNNNCTG	1 cut(s)	110
CfoI	GCGC	1 cut(s)	715
Cfr13I	GGNCC	1 cut(s)	679
Csp6I	GTAC	2 cut(s)	150, 582
CspCI	CAANNNNNGTGG	2 cut(s)	591, 626
CviAII	CATG	4 cut(s)	343, 370, 592, 634
CviQI	GTAC	2 cut(s)	150, 582
DdeI	CTNAG	4 cut(s)	27, 557, 691, 840
DpnI	GATC	3 cut(s)	114, 374, 659
DpnII	GATC	3 cut(s)	112, 372, 657
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
Eco57I	CTGAAG	3 cut(s)	33, 61, 89
EcoRI	GAATTC	1 cut(s)	767
EcoRII	CCWGG	2 cut(s)	123, 392
EcoT22I	ATGCAT	1 cut(s)	509
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	4 cut(s)	346, 373, 595, 637
FalI	AAGNNNNNCTT	2 cut(s)	743, 775
FatI	CATG	4 cut(s)	342, 369, 591, 633
FauNDI	CATATG	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	657
Fnu4HI	GCNGC	5 cut(s)	105, 540, 678, 801, 804
FokI	GGATG	1 cut(s)	516
Fsp4HI	GCNGC	5 cut(s)	105, 540, 678, 801, 804
FspBI	CTAG	2 cut(s)	176, 888
GlaI	GCGC	1 cut(s)	714
GluI	GCNGC	5 cut(s)	105, 540, 678, 801, 804
HaeIII	GGCC	4 cut(s)	94, 128, 419, 680
HhaI	GCGC	1 cut(s)	715
Hin1II	CATG	4 cut(s)	346, 373, 595, 637
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HinfI	GANTC	1 cut(s)	619
HphI	GGTGA	2 cut(s)	457, 866
Hpy166II	GTNNAC	2 cut(s)	367, 736
Hpy188I	TCNGA	3 cut(s)	28, 69, 558
Hpy188III	TCNNGA	2 cut(s)	110, 187
Hpy8I	GTNNAC	2 cut(s)	367, 736
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4V	TGCA	8 cut(s)	4, 221, 266, 380, 487, 507, 542, 803
HpyF3I	CTNAG	4 cut(s)	27, 557, 691, 840
Hsp92II	CATG	4 cut(s)	346, 373, 595, 637
HspAI	GCGC	1 cut(s)	713
KpnI	GGTACC	1 cut(s)	153
Ksp22I	TGATCA	1 cut(s)	657
Kzo9I	GATC	3 cut(s)	112, 372, 657
LmnI	GCTCC	2 cut(s)	112, 341
Lsp1109I	GCAGC	4 cut(s)	116, 526, 787, 815
LweI	GCATC	3 cut(s)	494, 516, 774
MaeI	CTAG	2 cut(s)	176, 888
MalI	GATC	3 cut(s)	114, 374, 659
MboI	GATC	3 cut(s)	112, 372, 657
MboII	GAAGA	4 cut(s)	26, 107, 511, 589
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	5 cut(s)	61, 82, 301, 321, 767
MlyI	GAGTC	1 cut(s)	613
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	8 cut(s)	56, 67, 139, 163, 176, 394, 552, 850
Mph1103I	ATGCAT	1 cut(s)	509
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	4 cut(s)	272, 324, 492, 570
MspR9I	CCNGG	2 cut(s)	125, 394
Mva1269I	GAATGC	1 cut(s)	552
MvaI	CCWGG	2 cut(s)	125, 394
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	3 cut(s)	112, 372, 657
NheI	GCTAGC	1 cut(s)	887
NlaIII	CATG	4 cut(s)	346, 373, 595, 637
NlaIV	GGNNCC	4 cut(s)	151, 230, 337, 681
NsiI	ATGCAT	1 cut(s)	509
NspI	RCATGY	1 cut(s)	595
PciI	ACATGT	1 cut(s)	591
PctI	GAATGC	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	74
PkrI	GCNGC	5 cut(s)	106, 541, 679, 802, 805
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
PscI	ACATGT	1 cut(s)	591
PshBI	ATTAAT	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	123, 392
PspGI	CCWGG	2 cut(s)	123, 392
PspN4I	GGNNCC	4 cut(s)	151, 230, 337, 681
PspPI	GGNCC	1 cut(s)	679
PstI	CTGCAG	3 cut(s)	223, 489, 805
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	151, 583
RsaNI	GTAC	2 cut(s)	150, 582
SaqAI	TTAA	4 cut(s)	272, 324, 492, 570
SatI	GCNGC	5 cut(s)	105, 540, 678, 801, 804
Sau3AI	GATC	3 cut(s)	112, 372, 657
Sau96I	GGNCC	1 cut(s)	679
SchI	GAGTC	1 cut(s)	613
ScrFI	CCNGG	2 cut(s)	125, 394
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	9 cut(s)	24, 109, 151, 155, 360, 457, 856, 889, 893
SfaNI	GCATC	3 cut(s)	494, 516, 774
SfcI	CTRYAG	3 cut(s)	219, 485, 801
Sse9I	AATT	5 cut(s)	61, 82, 301, 321, 767
SsiI	CCGC	1 cut(s)	677
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	2 cut(s)	176, 888
StyD4I	CCNGG	2 cut(s)	123, 392
TaaI	ACNGT	1 cut(s)	414
TasI	AATT	5 cut(s)	61, 82, 301, 321, 767
TauI	GCSGC	1 cut(s)	680
Tru1I	TTAA	4 cut(s)	272, 324, 492, 570
Tru9I	TTAA	4 cut(s)	272, 324, 492, 570
TscAI	CASTG	1 cut(s)	268
TseI	GCWGC	4 cut(s)	104, 539, 800, 803
TspDTI	ATGAA	4 cut(s)	75, 107, 828, 860
TspGWI	ACGGA	3 cut(s)	145, 514, 599
TspRI	CASTG	1 cut(s)	268
VspI	ATTAAT	1 cut(s)	324
XapI	RAATTY	3 cut(s)	61, 301, 767
XceI	RCATGY	1 cut(s)	595
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	2 cut(s)	176, 888
Zsp2I	ATGCAT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.