Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

54246573 .. 54249240

Gene Structure 2668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG342600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCAGCCCTTGATCTTCATCTTATGGCCTCTGTTTTTGGCATTCTGGGTACCATCTTCGCCGTCCTTGTCTACCTTGCCCCACTACCAACATTTTATAGGATTTTCAAGACAAAGTCTGTTCAAGGTTTCCAATCTATACCCTATTCAGTGGCGTTGTTTAGCGCCATGTTAATGCTCTATTATGGCTTCCTCAAGACAAATGCTTTAATTCTCATCGTGGTCAATTCCATTGGCAGCTTCATCGAAACTGTGTACCTTGTCATGTACTTGATTTATGCACCACCAAAAGTCAGGATTTTCACAGTAAAGCTGCTTGTCCTGTTTAATGTCTTGGCTTATGGTTTGATCTTAGGGGGTACAAGCCAAATCCCAAATGCTAGTCGGCGGTTGACAGTTGTTGGGTATATCAATGTTGTGTTCAATGTCTCTGTGTATGCTGCTCCTCTTAGTATTATGAGGCTGGTTATTAAAACAAAGAGTGTGGAATACATGTCATTCTCATTGTCACTCTGCTTAACCCTTTTAGCTGTTGTGTGGTTCTTCTATGGCCTTTTAATAGAAGATTTATTCATAGCGGCACCGAACATCTTAGGGTTCGCCTTTGGGATTGCGCAGATGATTATGTTCTTAGTCTACAAGAAAAAAAAGAAAGTTGCCTTACCAGAATGTAGTCTAAATGATCAGATACCAAACACAGACAGGGCTGCTACTGTAGAAAATGATGACATAGTAACAGCAGGTGAGGTTGGCGGTCTCGGCGTTAGAAAAGGTGAGGCAGAGTGGTCGAAGGTGGGGATGGAGGCGGTAGAGGTGGAGCTACTTCCTCTCGGTGGTCAACAAGTGTTTTCTAGCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

286

Amino Acids

31.45

Weight (kDa)

8.7

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 97	2.7e-23	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 218	2.1e-26	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	731
Acc16I	TGCGCA	1 cut(s)	615
Acc36I	ACCTGC	1 cut(s)	731
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	50, 580
AccI	GTMKAC	2 cut(s)	72, 636
AciI	CCGC	4 cut(s)	388, 578, 753, 806
AfaI	GTAC	4 cut(s)	52, 257, 269, 361
AfiI	CCNNNNNNNGG	1 cut(s)	833
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	3 cut(s)	109, 125, 424
AluBI	AGCT	4 cut(s)	240, 313, 530, 820
AluI	AGCT	4 cut(s)	240, 313, 530, 820
Alw26I	GTCTC	2 cut(s)	433, 761
AoxI	GGCC	2 cut(s)	27, 550
ApeKI	GCWGC	5 cut(s)	5, 237, 313, 440, 707
Asp718I	GGTACC	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	167, 616
AsuHPI	GGTGA	2 cut(s)	755, 785
BanI	GGYRCC	2 cut(s)	50, 580
BbvI	GCAGC	5 cut(s)	17, 249, 300, 427, 694
BccI	CCATC	2 cut(s)	62, 793
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	4 cut(s)	226, 260, 768, 802
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	2 cut(s)	433, 761
BfaI	CTAG	2 cut(s)	381, 852
BfmI	CTRYAG	1 cut(s)	714
BfoI	RGCGCY	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	731
BisI	GCNGC	6 cut(s)	6, 238, 314, 441, 579, 708
BlsI	GCNGC	6 cut(s)	7, 239, 315, 442, 580, 709
BmiI	GGNNCC	2 cut(s)	52, 582
BpuEI	CTTGAG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	761
Bsc4I	CCNNNNNNNGG	1 cut(s)	833
Bse8I	GATNNNNATC	1 cut(s)	18
BseGI	GGATG	1 cut(s)	804
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	833
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	5 cut(s)	17, 249, 300, 427, 694
BshFI	GGCC	2 cut(s)	29, 552
BshNI	GGYRCC	2 cut(s)	50, 580
BslI	CCNNNNNNNGG	1 cut(s)	833
BsmAI	GTCTC	2 cut(s)	433, 761
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	2 cut(s)	29, 552
Bso31I	GGTCTC	1 cut(s)	761
Bsp143I	GATC	3 cut(s)	13, 348, 682
BspACI	CCGC	4 cut(s)	388, 578, 753, 806
BspANI	GGCC	2 cut(s)	29, 552
BspLI	GGNNCC	2 cut(s)	52, 582
BspMI	ACCTGC	1 cut(s)	731
BspT107I	GGYRCC	2 cut(s)	50, 580
BspTNI	GGTCTC	1 cut(s)	761
BssMI	GATC	3 cut(s)	13, 348, 682
Bst4CI	ACNGT	4 cut(s)	253, 307, 397, 715
BstDEI	CTNAG	4 cut(s)	352, 449, 592, 631
BstF5I	GGATG	1 cut(s)	804
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	167, 616
BstKTI	GATC	3 cut(s)	16, 351, 685
BstMAI	GTCTC	2 cut(s)	433, 761
BstMBI	GATC	3 cut(s)	13, 348, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	759
BstNSI	RCATGY	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	714
BstV1I	GCAGC	5 cut(s)	17, 249, 300, 427, 694
BsuRI	GGCC	2 cut(s)	29, 552
BtsCI	GGATG	1 cut(s)	804
BtsIMutI	CAGTG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	731
CfoI	GCGC	2 cut(s)	167, 616
Csp6I	GTAC	4 cut(s)	51, 256, 268, 360
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	3 cut(s)	169, 265, 493
CviQI	GTAC	4 cut(s)	51, 256, 268, 360
DdeI	CTNAG	4 cut(s)	352, 449, 592, 631
DpnI	GATC	3 cut(s)	15, 350, 684
DpnII	GATC	3 cut(s)	13, 348, 682
Eco31I	GGTCTC	1 cut(s)	761
FaeI	CATG	3 cut(s)	172, 268, 496
FatI	CATG	3 cut(s)	168, 264, 492
FbaI	TGATCA	1 cut(s)	682
FblI	GTMKAC	2 cut(s)	72, 636
Fnu4HI	GCNGC	6 cut(s)	6, 238, 314, 441, 579, 708
FokI	GGATG	1 cut(s)	811
Fsp4HI	GCNGC	6 cut(s)	6, 238, 314, 441, 579, 708
FspBI	CTAG	2 cut(s)	381, 852
FspI	TGCGCA	1 cut(s)	615
GlaI	GCGC	2 cut(s)	166, 615
GluI	GCNGC	6 cut(s)	6, 238, 314, 441, 579, 708
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	29, 552
HhaI	GCGC	2 cut(s)	167, 616
Hin1II	CATG	3 cut(s)	172, 268, 496
Hin6I	GCGC	2 cut(s)	165, 614
HinP1I	GCGC	2 cut(s)	165, 614
HincII	GTYRAC	2 cut(s)	393, 839
HindII	GTYRAC	2 cut(s)	393, 839
HphI	GGTGA	2 cut(s)	755, 785
Hpy166II	GTNNAC	5 cut(s)	73, 256, 393, 637, 839
Hpy188I	TCNGA	1 cut(s)	687
Hpy188III	TCNNGA	3 cut(s)	109, 196, 295
Hpy8I	GTNNAC	5 cut(s)	73, 256, 393, 637, 839
HpyAV	CCTTC	1 cut(s)	784
HpyCH4III	ACNGT	4 cut(s)	253, 307, 397, 715
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	759
HpyF3I	CTNAG	4 cut(s)	352, 449, 592, 631
Hsp92II	CATG	3 cut(s)	172, 268, 496
HspAI	GCGC	2 cut(s)	165, 614
KpnI	GGTACC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	3 cut(s)	13, 348, 682
LmnI	GCTCC	2 cut(s)	448, 817
LpnPI	CCDG	7 cut(s)	32, 280, 335, 449, 678, 688, 726
Lsp1109I	GCAGC	5 cut(s)	17, 249, 300, 427, 694
MaeI	CTAG	2 cut(s)	381, 852
MaeIII	GTNAC	2 cut(s)	507, 733
MalI	GATC	3 cut(s)	15, 350, 684
MboI	GATC	3 cut(s)	13, 348, 682
MboII	GAAGA	4 cut(s)	8, 49, 535, 575
MluCI	AATT	2 cut(s)	210, 226
MnlI	CCTC	9 cut(s)	40, 203, 453, 456, 739, 769, 796, 805, 837
MseI	TTAA	7 cut(s)	173, 209, 327, 471, 518, 557, 859
MslI	CAYNNNNRTG	1 cut(s)	173
Mva1269I	GAATGC	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	759
NdeII	GATC	3 cut(s)	13, 348, 682
NlaIII	CATG	3 cut(s)	172, 268, 496
NlaIV	GGNNCC	2 cut(s)	52, 582
NmeAIII	GCCGAG	1 cut(s)	738
NmuCI	GTSAC	1 cut(s)	507
NsbI	TGCGCA	1 cut(s)	615
NspI	RCATGY	1 cut(s)	496
PaqCI	CACCTGC	1 cut(s)	731
PciI	ACATGT	1 cut(s)	492
PctI	GAATGC	1 cut(s)	42
PflFI	GACNNNGTC	1 cut(s)	115
PkrI	GCNGC	6 cut(s)	7, 239, 315, 442, 580, 709
PscI	ACATGT	1 cut(s)	492
PspN4I	GGNNCC	2 cut(s)	52, 582
PsyI	GACNNNGTC	1 cut(s)	115
RsaI	GTAC	4 cut(s)	52, 257, 269, 361
RsaNI	GTAC	4 cut(s)	51, 256, 268, 360
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	7 cut(s)	173, 209, 327, 471, 518, 557, 859
SatI	GCNGC	6 cut(s)	6, 238, 314, 441, 579, 708
Sau3AI	GATC	3 cut(s)	13, 348, 682
SfcI	CTRYAG	1 cut(s)	714
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	210, 226
SsiI	CCGC	4 cut(s)	388, 578, 753, 806
SspMI	CTAG	2 cut(s)	381, 852
TaaI	ACNGT	4 cut(s)	253, 307, 397, 715
TaqI	TCGA	2 cut(s)	246, 788
TasI	AATT	2 cut(s)	210, 226
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	581
Tru1I	TTAA	7 cut(s)	173, 209, 327, 471, 518, 557, 859
Tru9I	TTAA	7 cut(s)	173, 209, 327, 471, 518, 557, 859
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	507
TseI	GCWGC	5 cut(s)	5, 237, 313, 440, 707
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	3 cut(s)	8, 232, 562
TspRI	CASTG	1 cut(s)	156
Tth111I	GACNNNGTC	1 cut(s)	115
XceI	RCATGY	1 cut(s)	496
XmiI	GTMKAC	2 cut(s)	72, 636
XspI	CTAG	2 cut(s)	381, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.