Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Forward (+)

14384927 .. 14386311

Gene Structure 1385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011993

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCAGCCCTTGATCTTCATCTTATGGCTTCTGTGTTTGGCATTCTGGGTACCATCGTCGCCTTCCTCGTCTACCTTGCCCCACTACCAACATTTTATAGGATTTTCAAGACAAAATCAAGACAAGGTTTCCAATCTATACCCTATTCAGTGGCATTGTTTAGCGCCATGTTAACGCTCTACTATGGCTTCCTCAAGACAAATATTTTCACAGCAAAGCTACTTGTTCTGTTTAATGTCTTGACTTATGGTTTGATCTTATTGAGTACAAGCCAAACCCCAAATGTTCTTCTGCGGTTGAAAGTTGTTGGATGGATTAATGTTGTGTTCAATATCTCTGTGTTTGCTGCTCCTCTTAGTATTATGAGGCTGGTTATTAAAACAAAGAGTGTGGAATACATGTCATTCCCTTTGTCATTCTGCTCAACTCTTTGTGCCGTTATGTGGTTCTTCTATGGCCTTTTAATAATAAGGGATTTATTCATAGCTGCACCGAACATCTTCGGGTTCGCCTTTGGGATTGGGCAGATGATTATGTTCTTGGTCTGTAAGAACACCAAGAAAGCTGTCTTACCAGAATATAGTCTAAATGATAAGATACCAAGCACAAACAGGGTTGCTTCTGTAGAAAACAATGACATAGTAACAGCAGGTGAAATAAATACTCGAACTCAATTGGAAGTATGGGATATAAAAAAGAGCTCTGAAGCCGATGACCATGAGAACCAATCAGAGATCATTACAAAGCCAAGTACTGAATCAATTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

257

Amino Acids

28.66

Weight (kDa)

9.06

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 79	2.2e-12	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	102 - 187	2.4e-24	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	641
Acc36I	ACCTGC	1 cut(s)	641
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	726
AfaI	GTAC	3 cut(s)	52, 268, 754
AfiI	CCNNNNNNNGG	1 cut(s)	444
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	3 cut(s)	109, 301, 331
AluBI	AGCT	4 cut(s)	220, 488, 566, 702
AluI	AGCT	4 cut(s)	220, 488, 566, 702
Alw21I	GWGCWC	1 cut(s)	704
AoxI	GGCC	1 cut(s)	457
ApeKI	GCWGC	3 cut(s)	5, 347, 488
ArsI	GACNNNNNNTTYG	2 cut(s)	235, 267
AseI	ATTAAT	1 cut(s)	318
Asp700I	GAANNNNTTC	1 cut(s)	500
Asp718I	GGTACC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	665
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	704
Bbv12I	GWGCWC	1 cut(s)	704
BbvI	GCAGC	3 cut(s)	17, 334, 475
BccI	CCATC	2 cut(s)	62, 306
BceAI	ACGGC	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	624
BfoI	RGCGCY	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	641
BisI	GCNGC	3 cut(s)	6, 348, 489
BlsI	GCNGC	3 cut(s)	7, 349, 490
BmcAI	AGTACT	1 cut(s)	754
BmiI	GGNNCC	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	18
BseGI	GGATG	1 cut(s)	317
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	3 cut(s)	17, 334, 475
BsgI	GTGCAG	1 cut(s)	474
BshFI	GGCC	1 cut(s)	459
BshNI	GGYRCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	704
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	704
Bsp143I	GATC	3 cut(s)	13, 255, 735
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	52
BspMI	ACCTGC	1 cut(s)	641
BspT107I	GGYRCC	1 cut(s)	50
BssMI	GATC	3 cut(s)	13, 255, 735
BstDEI	CTNAG	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	317
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	3 cut(s)	16, 258, 738
BstMBI	GATC	3 cut(s)	13, 255, 735
BstNSI	RCATGY	1 cut(s)	403
BstSFI	CTRYAG	1 cut(s)	624
BstV1I	GCAGC	3 cut(s)	17, 334, 475
BsuRI	GGCC	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	641
CfoI	GCGC	1 cut(s)	167
Csp6I	GTAC	3 cut(s)	51, 267, 753
CspCI	CAANNNNNGTGG	2 cut(s)	372, 407
CviAII	CATG	3 cut(s)	169, 400, 719
CviQI	GTAC	3 cut(s)	51, 267, 753
DdeI	CTNAG	1 cut(s)	356
DpnI	GATC	3 cut(s)	15, 257, 737
DpnII	GATC	3 cut(s)	13, 255, 735
Ecl136II	GAGCTC	1 cut(s)	702
Eco24I	GRGCYC	1 cut(s)	704
Eco53kI	GAGCTC	1 cut(s)	702
Eco57I	CTGAAG	1 cut(s)	726
EcoICRI	GAGCTC	1 cut(s)	702
EcoT38I	GRGCYC	1 cut(s)	704
FaeI	CATG	3 cut(s)	172, 403, 722
FatI	CATG	3 cut(s)	168, 399, 718
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	6, 348, 489
FokI	GGATG	1 cut(s)	324
FriOI	GRGCYC	1 cut(s)	704
Fsp4HI	GCNGC	3 cut(s)	6, 348, 489
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	3 cut(s)	6, 348, 489
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	459
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	3 cut(s)	172, 403, 722
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	1 cut(s)	758
HpaI	GTTAAC	1 cut(s)	174
HphI	GGTGA	1 cut(s)	665
Hpy166II	GTNNAC	2 cut(s)	73, 174
Hpy188I	TCNGA	2 cut(s)	706, 733
Hpy188III	TCNNGA	4 cut(s)	109, 120, 196, 241
Hpy8I	GTNNAC	2 cut(s)	73, 174
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	73
HpyCH4V	TGCA	1 cut(s)	491
HpyF3I	CTNAG	1 cut(s)	356
Hsp92II	CATG	3 cut(s)	172, 403, 722
HspAI	GCGC	1 cut(s)	165
KpnI	GGTACC	1 cut(s)	54
KspAI	GTTAAC	1 cut(s)	174
Kzo9I	GATC	3 cut(s)	13, 255, 735
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	5 cut(s)	32, 356, 588, 598, 636
Lsp1109I	GCAGC	3 cut(s)	17, 334, 475
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	3 cut(s)	15, 257, 737
MboI	GATC	3 cut(s)	13, 255, 735
MboII	GAAGA	4 cut(s)	8, 281, 442, 493
MfeI	CAATTG	2 cut(s)	674, 762
MhlI	GDGCHC	1 cut(s)	704
MluCI	AATT	2 cut(s)	674, 762
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	4 cut(s)	77, 203, 360, 363
MroXI	GAANNNNTTC	1 cut(s)	500
MseI	TTAA	5 cut(s)	173, 234, 318, 378, 464
MunI	CAATTG	2 cut(s)	674, 762
Mva1269I	GAATGC	1 cut(s)	42
NdeII	GATC	3 cut(s)	13, 255, 735
NlaIII	CATG	3 cut(s)	172, 403, 722
NlaIV	GGNNCC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	403
PaqCI	CACCTGC	1 cut(s)	641
PciI	ACATGT	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	758
PkrI	GCNGC	3 cut(s)	7, 349, 490
PscI	ACATGT	1 cut(s)	399
PshBI	ATTAAT	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	704
PspN4I	GGNNCC	1 cut(s)	52
RsaI	GTAC	3 cut(s)	52, 268, 754
RsaNI	GTAC	3 cut(s)	51, 267, 753
SacI	GAGCTC	1 cut(s)	704
SaqAI	TTAA	5 cut(s)	173, 234, 318, 378, 464
SatI	GCNGC	3 cut(s)	6, 348, 489
Sau3AI	GATC	3 cut(s)	13, 255, 735
ScaI	AGTACT	1 cut(s)	754
SduI	GDGCHC	1 cut(s)	704
SetI	ASST	7 cut(s)	78, 130, 222, 490, 568, 655, 704
SfcI	CTRYAG	1 cut(s)	624
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	674, 762
SsiI	CCGC	1 cut(s)	295
SspI	AATATT	1 cut(s)	205
SstI	GAGCTC	1 cut(s)	704
TaqI	TCGA	1 cut(s)	667
TasI	AATT	2 cut(s)	674, 762
TatI	WGTACW	2 cut(s)	266, 752
TfiI	GAWTC	1 cut(s)	758
Tru1I	TTAA	5 cut(s)	173, 234, 318, 378, 464
Tru9I	TTAA	5 cut(s)	173, 234, 318, 378, 464
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	3 cut(s)	5, 347, 488
TspDTI	ATGAA	2 cut(s)	8, 472
TspRI	CASTG	1 cut(s)	156
VspI	ATTAAT	1 cut(s)	318
XceI	RCATGY	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	500
ZrmI	AGTACT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.