Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

20240197 .. 20242416

Gene Structure 2220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCACCCCTTAATCTTCGTCTTATGGCCTCTATATTTGGAATTCTGGGTACCGTCGGCTCGTTCCTCGTTTACCTAGCTCCAATCCCAACATTTTATTGGATTTACAAGAAAAAATCAACATTTCAGTTCCCATCTCTACCCTACTCAGTGGCATTGTTTAGCGCCATGTTGACGCTCTACTATGCCTTCCTCAAGACAAACTCTATGATAATCATGGCGATAAATGCCCTTGGCATCGTAATTGAAACCGGGTACCTTGTGATGTTCTTGATTTATACAGCACCAAAATCCAGGATCTACACAGCAAAGTTTCTTGTCATTTTTAATGTTGTGGGTTTTGGAGTGATCGTATTGAGTACATGCCTCATCCCAAACGATGTTCTGCGGTTGCAAATTGTTGGGTGGGTTAATATCGTGTTTGGTGTTGGTGTATATGCTTCTCCTCTTATTGTTCTGAAAGACGTTATCAAAACAAAGAGTGTCGAGTTCATGTCGTTCTCCTTGTCACTAAGCTTAACTCTATGTGCTATCCTGTGGTTCTTCCATGGCCTTCTAATAAAAGATATATTCATAGCGGCACCAAACGTGTTAGGGTTTATATTCGGGATTGTGCAGATGTTGATGTTCTTCATCTACCGGAAGAGCACCAAGAAAGCTGATTTACAGGAATATAGTCTAAGCACAACCACGGTCGATGTTCCGGTGAATTCTGACACGAAAGTAGTACTGGCAGTAATAGACATTCATACTCAAATTCAAGTGAAAACAGGGGATGAAAAGATGAGTTCTGACACTGATGATCTTGAGAATCAACTACCAGAGCAGGGGCGGCCGGAAGACAGGTCGACCAACACCACCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

289

Amino Acids

32.16

Weight (kDa)

8.7

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 97	1.1e-17	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	132 - 217	1.5e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	50, 255
AccB1I	GGYRCC	4 cut(s)	4, 50, 255, 580
AccI	GTMKAC	1 cut(s)	848
AciI	CCGC	3 cut(s)	388, 578, 832
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	833
AcsI	RAATTY	3 cut(s)	42, 709, 756
AfaI	GTAC	4 cut(s)	52, 257, 361, 729
AfiI	CCNNNNNNNGG	1 cut(s)	827
AflIII	ACRYGT	1 cut(s)	588
AgsI	TTSAA	2 cut(s)	248, 761
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	3 cut(s)	80, 516, 659
AluI	AGCT	3 cut(s)	80, 516, 659
Alw21I	GWGCWC	1 cut(s)	650
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	3 cut(s)	27, 550, 833
ApoI	RAATTY	3 cut(s)	42, 709, 756
Asp718I	GGTACC	2 cut(s)	50, 255
AspLEI	GCGC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	718
BanI	GGYRCC	4 cut(s)	4, 50, 255, 580
BbsI	GAAGAC	1 cut(s)	846
Bbv12I	GWGCWC	1 cut(s)	650
BccI	CCATC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	295
BcnI	CCSGG	1 cut(s)	253
BfaI	CTAG	2 cut(s)	77, 865
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	2 cut(s)	579, 833
BlsI	GCNGC	2 cut(s)	580, 834
BmcAI	AGTACT	1 cut(s)	729
Bme1390I	CCNGG	2 cut(s)	253, 295
BmiI	GGNNCC	4 cut(s)	6, 52, 257, 582
BmrFI	CCNGG	2 cut(s)	253, 295
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	846
BpuEI	CTTGAG	2 cut(s)	179, 827
BpuMI	CCSGG	1 cut(s)	253
BsaJI	CCNNGG	3 cut(s)	232, 547, 690
BsaWI	WCCGGW	2 cut(s)	639, 703
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	827
Bse1I	ACTGG	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	3 cut(s)	232, 547, 690
BseGI	GGATG	2 cut(s)	369, 781
BseLI	CCNNNNNNNGG	1 cut(s)	827
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	735
BseRI	GAGGAG	1 cut(s)	435
BseX3I	CGGCCG	1 cut(s)	833
BsgI	GTGCAG	1 cut(s)	635
Bsh1285I	CGRYCG	2 cut(s)	696, 836
BshFI	GGCC	3 cut(s)	29, 552, 835
BshNI	GGYRCC	4 cut(s)	4, 50, 255, 580
BsiEI	CGRYCG	2 cut(s)	696, 836
BsiHKAI	GWGCWC	1 cut(s)	650
BsiSI	CCGG	4 cut(s)	252, 640, 704, 836
BslI	CCNNNNNNNGG	1 cut(s)	827
BsnI	GGCC	3 cut(s)	29, 552, 835
Bsp1286I	GDGCHC	1 cut(s)	650
Bsp143I	GATC	3 cut(s)	297, 348, 802
Bsp19I	CCATGG	1 cut(s)	547
BspACI	CCGC	3 cut(s)	388, 578, 832
BspANI	GGCC	3 cut(s)	29, 552, 835
BspCNI	CTCAG	1 cut(s)	161
BspLI	GGNNCC	4 cut(s)	6, 52, 257, 582
BspPI	GGATC	1 cut(s)	305
BspQI	GCTCTTC	1 cut(s)	638
BspT107I	GGYRCC	4 cut(s)	4, 50, 255, 580
BsrI	ACTGG	1 cut(s)	735
BssECI	CCNNGG	3 cut(s)	232, 547, 690
BssMI	GATC	3 cut(s)	297, 348, 802
BssT1I	CCWWGG	2 cut(s)	232, 547
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	2 cut(s)	55, 694
Bst6I	CTCTTC	1 cut(s)	638
BstDEI	CTNAG	3 cut(s)	148, 512, 680
BstDSI	CCRYGG	2 cut(s)	547, 690
BstF5I	GGATG	2 cut(s)	369, 781
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	3 cut(s)	300, 351, 805
BstMBI	GATC	3 cut(s)	297, 348, 802
BstMCI	CGRYCG	2 cut(s)	696, 836
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 832
BstNI	CCWGG	1 cut(s)	295
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	251, 293
BstV2I	GAAGAC	1 cut(s)	846
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
BstZI	CGGCCG	1 cut(s)	833
BsuRI	GGCC	3 cut(s)	29, 552, 835
BtgI	CCRYGG	2 cut(s)	547, 690
BtsCI	GGATG	2 cut(s)	369, 781
BtsIMutI	CAGTG	2 cut(s)	156, 795
CfoI	GCGC	1 cut(s)	167
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	4 cut(s)	51, 256, 360, 728
CviAII	CATG	5 cut(s)	169, 217, 363, 493, 548
CviJI	RGCY	7 cut(s)	29, 60, 80, 516, 552, 659, 835
CviKI_1	RGCY	7 cut(s)	29, 60, 80, 516, 552, 659, 835
CviQI	GTAC	4 cut(s)	51, 256, 360, 728
DdeI	CTNAG	3 cut(s)	148, 512, 680
DpnI	GATC	3 cut(s)	299, 350, 804
DpnII	GATC	3 cut(s)	297, 348, 802
EaeI	YGGCCR	1 cut(s)	833
EagI	CGGCCG	1 cut(s)	833
Eam1104I	CTCTTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	638
EclXI	CGGCCG	1 cut(s)	833
Eco130I	CCWWGG	2 cut(s)	232, 547
Eco52I	CGGCCG	1 cut(s)	833
EcoRI	GAATTC	2 cut(s)	42, 709
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	2 cut(s)	232, 547
ErhI	CCWWGG	2 cut(s)	232, 547
FaeI	CATG	5 cut(s)	172, 220, 366, 496, 551
FatI	CATG	5 cut(s)	168, 216, 362, 492, 547
FblI	GTMKAC	1 cut(s)	848
Fnu4HI	GCNGC	2 cut(s)	579, 833
FokI	GGATG	2 cut(s)	356, 788
Fsp4HI	GCNGC	2 cut(s)	579, 833
FspBI	CTAG	2 cut(s)	77, 865
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	2 cut(s)	579, 833
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	29, 552, 835
HapII	CCGG	4 cut(s)	252, 640, 704, 836
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	5 cut(s)	172, 220, 366, 496, 551
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	2 cut(s)	174, 849
HindII	GTYRAC	2 cut(s)	174, 849
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	1 cut(s)	811
HpaII	CCGG	4 cut(s)	252, 640, 704, 836
HphI	GGTGA	1 cut(s)	718
Hpy166II	GTNNAC	3 cut(s)	73, 174, 849
Hpy188I	TCNGA	3 cut(s)	459, 715, 793
Hpy188III	TCNNGA	4 cut(s)	196, 271, 607, 806
Hpy8I	GTNNAC	3 cut(s)	73, 174, 849
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	199, 563
HpyCH4III	ACNGT	2 cut(s)	55, 694
HpyCH4IV	ACGT	2 cut(s)	465, 588
HpyCH4V	TGCA	2 cut(s)	394, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 832
HpyF3I	CTNAG	3 cut(s)	148, 512, 680
HpySE526I	ACGT	2 cut(s)	465, 588
Hsp92II	CATG	5 cut(s)	172, 220, 366, 496, 551
HspAI	GCGC	1 cut(s)	165
KpnI	GGTACC	2 cut(s)	54, 259
Kzo9I	GATC	3 cut(s)	297, 348, 802
LguI	GCTCTTC	1 cut(s)	638
LmnI	GCTCC	1 cut(s)	85
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	2 cut(s)	77, 865
MaeII	ACGT	2 cut(s)	465, 588
MaeIII	GTNAC	1 cut(s)	507
MalI	GATC	3 cut(s)	299, 350, 804
MboI	GATC	3 cut(s)	297, 348, 802
MboII	GAAGA	5 cut(s)	8, 535, 622, 655, 851
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	650
MluCI	AATT	5 cut(s)	42, 243, 396, 709, 756
MnlI	CCTC	5 cut(s)	40, 77, 203, 377, 456
MseI	TTAA	4 cut(s)	12, 327, 411, 518
MspI	CCGG	4 cut(s)	252, 640, 704, 836
MspR9I	CCNGG	2 cut(s)	253, 295
MvaI	CCWGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	2 cut(s)	227, 832
NciI	CCSGG	1 cut(s)	253
NcoI	CCATGG	1 cut(s)	547
NdeII	GATC	3 cut(s)	297, 348, 802
NlaIII	CATG	5 cut(s)	172, 220, 366, 496, 551
NlaIV	GGNNCC	4 cut(s)	6, 52, 257, 582
NmuCI	GTSAC	1 cut(s)	507
NspI	RCATGY	1 cut(s)	366
PciSI	GCTCTTC	1 cut(s)	638
PfeI	GAWTC	1 cut(s)	811
PfoI	TCCNGGA	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	580, 834
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	4 cut(s)	6, 52, 257, 582
PsuI	RGATCY	1 cut(s)	297
RsaI	GTAC	4 cut(s)	52, 257, 361, 729
RsaNI	GTAC	4 cut(s)	51, 256, 360, 728
SalI	GTCGAC	1 cut(s)	847
SapI	GCTCTTC	1 cut(s)	638
SaqAI	TTAA	4 cut(s)	12, 327, 411, 518
SatI	GCNGC	2 cut(s)	579, 833
Sau3AI	GATC	3 cut(s)	297, 348, 802
ScaI	AGTACT	1 cut(s)	729
ScrFI	CCNGG	2 cut(s)	253, 295
SduI	GDGCHC	1 cut(s)	650
SetI	ASST	9 cut(s)	78, 82, 261, 468, 518, 591, 661, 848, 866
SfaNI	GCATC	1 cut(s)	246
SmlI	CTYRAG	2 cut(s)	194, 806
SmoI	CTYRAG	2 cut(s)	194, 806
Sse9I	AATT	5 cut(s)	42, 243, 396, 709, 756
SsiI	CCGC	3 cut(s)	388, 578, 832
SspMI	CTAG	2 cut(s)	77, 865
StyD4I	CCNGG	2 cut(s)	251, 293
StyI	CCWWGG	2 cut(s)	232, 547
TaaI	ACNGT	2 cut(s)	55, 694
TaiI	ACGT	2 cut(s)	468, 591
TaqI	TCGA	3 cut(s)	486, 696, 848
TasI	AATT	5 cut(s)	42, 243, 396, 709, 756
TatI	WGTACW	2 cut(s)	359, 727
TauI	GCSGC	2 cut(s)	581, 835
TfiI	GAWTC	1 cut(s)	811
Tru1I	TTAA	4 cut(s)	12, 327, 411, 518
Tru9I	TTAA	4 cut(s)	12, 327, 411, 518
TscAI	CASTG	2 cut(s)	156, 802
TseFI	GTSAC	1 cut(s)	507
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	5 cut(s)	481, 562, 622, 737, 792
TspRI	CASTG	2 cut(s)	156, 802
XapI	RAATTY	3 cut(s)	42, 709, 756
XceI	RCATGY	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	96
XmiI	GTMKAC	1 cut(s)	848
XspI	CTAG	2 cut(s)	77, 865
ZrmI	AGTACT	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.