Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

36856741 .. 36860742

Gene Structure 4002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0229600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGACTCAAGACGTGGAGATGAAAGAGGTCCCGGCCCCTTCCAATTCAGTCTCTTCTACTACTCCCACAACTCTCCACCATTTGAAGGAGATTGCTTCGCTTCTTGAGACCGCTGCGTACTCCAAGGAGGTCCGGCGAGTTGTCCGCGCCGTTAGGCTGACGATGGCGAAGAGGCGGAAGCTGAGTGTCTCTGTGCTCTCGGCGTTTCTCAGTTTCGCCTTCTCGCCGGGATCTGAGGCTCACACCCGGTTGTCCTCCTACCTTCCGAAGGACGATGAGCATGACATGGATGTTGATACTGCAACTTCCGCAACTCAAGTTCCCAAGAAACATGCCTCGCCTGAGCTAGAGATTTACTGCTACTTGCTGGTGCTGATTTTTCTGATTGATCAGAAAAAATACAGTGAGGCTAAAGCTTGTGCCACAGCAGGCATTGCTCGACTAAAGAACATGAATAGGAGAACTATTGATGTTCTGGCATCAAGGCTCTACTTCTATTACTCTCTTAGCTATGAATACACCGGTGATCTTGCAGAAATTAGAGGGAACCTTCTTAATCTTCATCGAATTGCAACTTTGCGCCGTGATGAGCTGGGCCAGGAGACACTTCTGAACCTACTGCTTCGCAATTACCTGTCATATAACCTATATGATCAGGCAGAGAAACTGAGGTCCAAGGCTCCTCGATTTGAGGCTCACTCAAACCAGCAGTTTTGTCGGTATCTCTTTTATCTGGGAAAGATCAGAACCATTCAGTTGGAGTATACTGATGCAAAGGAGTCCCTTCTTCAAGCTGCTAGGAAAGCCCCTGTAGCTGCCCTTGGCTTTCGAATTCAATGTAACAAGTGGGCAGTTATCGTACGCTTGTTGCTTGGAGAAATCCCTGAGAGGACTGTGTTTATGCAAAAAGGAATGGAGAAGGCTTTGAGGCCATACTTTGAACTAACAAATGCTGTGAGGATTGGTGACTTGGAACTATTCAGAACTATAGCTGACAAGTTCTCGAATGTGTTTAGCTCAGACGGAACCCACAATTTGATTGTGAGGCTGCGACATAATGTTATAAGAACAGGGTTGCGTAACATTAGCATCTCGTATTCTCGAATTTCTCTGGCTGATGTTGCCAAAAAGCTGAGATTGGACTCCCCCAACCCTGTTGCTGATGCTGAAAGTATTGTGGCCAAGGCAATCCGAGATGGTGCAATTGATGCCACTCTGGATCATGCAAATGGATATATGGTGTCAAAGGAAACTGGAGATATCTACTCTACAAATGAGCCCCAAGCTGCATTTGATACAAGGATTGCTTTCTGCCTCAATTTGCACAATGATGCAGTGCGAGCACTAAGGTTTCCACCAAATTCTCACAAGGAGAAAGAAAGTGCTGAGAAAAGGAGGGAGAGACAGCAGCAGGAGCAAGAGCTTGCAAAGCATATAGCTGAGGAGGATGATGACGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

487

Amino Acids

55.39

Weight (kDa)

8.92

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_PSMD3_N	PF25573	23 - 316	6.6e-106	PSMD3-like, N-terminal TPR repeats
PCI	PF01399	334 - 416	7.6e-20	PCI domain
Rpn3_C	PF08375	420 - 485	4.1e-27	Proteasome regulatory subunit C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1064
AccI	GTMKAC	1 cut(s)	764
AccII	CGCG	1 cut(s)	147
AciI	CCGC	4 cut(s)	111, 145, 175, 309
AclWI	GGATC	2 cut(s)	238, 1227
AcoI	YGGCCR	1 cut(s)	1179
AcsI	RAATTY	4 cut(s)	831, 1104, 1360, 1457
AfaI	GTAC	2 cut(s)	119, 861
AfiI	CCNNNNNNNGG	2 cut(s)	85, 268
AgeI	ACCGGT	1 cut(s)	521
AgsI	TTSAA	4 cut(s)	85, 791, 836, 941
AjiI	CACGTC	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	597
Alw21I	GWGCWC	2 cut(s)	198, 1345
Alw26I	GTCTC	5 cut(s)	55, 101, 193, 596, 1396
AlwI	GGATC	2 cut(s)	238, 1227
AoxI	GGCC	4 cut(s)	33, 595, 929, 1179
ApeKI	GCWGC	6 cut(s)	113, 794, 815, 1048, 1286, 1408
ApoI	RAATTY	4 cut(s)	831, 1104, 1360, 1457
AsiGI	ACCGGT	1 cut(s)	521
AspLEI	GCGC	2 cut(s)	149, 582
AspS9I	GGNCC	5 cut(s)	28, 34, 130, 595, 672
AsuC2I	CCSGG	3 cut(s)	32, 228, 247
AsuHPI	GGTGA	2 cut(s)	536, 977
AsuII	TTCGAA	1 cut(s)	829
AvaII	GGWCC	3 cut(s)	28, 130, 672
BalI	TGGCCA	1 cut(s)	1181
BanII	GRGCYC	1 cut(s)	1281
Bbv12I	GWGCWC	2 cut(s)	198, 1345
BbvCI	CCTCAGC	1 cut(s)	1440
BbvI	GCAGC	6 cut(s)	100, 781, 802, 1035, 1273, 1420
BccI	CCATC	2 cut(s)	157, 1190
BceAI	ACGGC	2 cut(s)	134, 567
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	1 cut(s)	599
BclI	TGATCA	2 cut(s)	388, 652
BcnI	CCSGG	3 cut(s)	32, 228, 247
BcoDI	GTCTC	5 cut(s)	55, 101, 193, 596, 1396
BfaI	CTAG	2 cut(s)	347, 798
BfmI	CTRYAG	2 cut(s)	810, 987
BisI	GCNGC	6 cut(s)	114, 795, 816, 1049, 1287, 1409
BlsI	GCNGC	6 cut(s)	115, 796, 817, 1050, 1288, 1410
Bme1390I	CCNGG	4 cut(s)	32, 228, 247, 599
Bme18I	GGWCC	3 cut(s)	28, 130, 672
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	5 cut(s)	28, 34, 130, 595, 672
BmiI	GGNNCC	5 cut(s)	30, 36, 548, 681, 1027
BmrFI	CCNGG	4 cut(s)	32, 228, 247, 599
BmsI	GCATC	6 cut(s)	488, 760, 1098, 1153, 1198, 1321
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
BpmI	CTGGAG	1 cut(s)	1275
Bpu10I	CCTNAGC	2 cut(s)	342, 1440
Bpu14I	TTCGAA	1 cut(s)	829
BpuEI	CTTGAG	2 cut(s)	125, 300
BpuMI	CCSGG	3 cut(s)	32, 228, 247
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	4 cut(s)	123, 675, 820, 1182
BsaWI	WCCGGW	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 268
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	1 cut(s)	1258
Bse3DI	GCAATG	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	4 cut(s)	123, 675, 820, 1182
BseGI	GGATG	2 cut(s)	295, 1453
BseLI	CCNNNNNNNGG	2 cut(s)	85, 268
BseMI	GCAATG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	1258
BseRI	GAGGAG	2 cut(s)	672, 1457
BseXI	GCAGC	6 cut(s)	100, 781, 802, 1035, 1273, 1420
BseYI	CCCAGC	1 cut(s)	592
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	4 cut(s)	35, 597, 931, 1181
BshTI	ACCGGT	1 cut(s)	521
BsiHKAI	GWGCWC	2 cut(s)	198, 1345
BsiSI	CCGG	5 cut(s)	32, 133, 227, 247, 522
BsiWI	CGTACG	1 cut(s)	859
BslFI	GGGAC	2 cut(s)	14, 766
BslI	CCNNNNNNNGG	2 cut(s)	85, 268
BsmAI	GTCTC	5 cut(s)	55, 101, 193, 596, 1396
BsmFI	GGGAC	2 cut(s)	14, 766
BsnI	GGCC	4 cut(s)	35, 597, 931, 1181
Bso31I	GGTCTC	1 cut(s)	101
Bsp119I	TTCGAA	1 cut(s)	829
Bsp1286I	GDGCHC	3 cut(s)	198, 1281, 1345
Bsp143I	GATC	6 cut(s)	230, 388, 526, 652, 741, 1219
BspACI	CCGC	4 cut(s)	111, 145, 175, 309
BspANI	GGCC	4 cut(s)	35, 597, 931, 1181
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	5 cut(s)	30, 36, 548, 681, 1027
BspPI	GGATC	2 cut(s)	238, 1227
BspT104I	TTCGAA	1 cut(s)	829
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	1258
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	4 cut(s)	123, 675, 820, 1182
BssMI	GATC	6 cut(s)	230, 388, 526, 652, 741, 1219
BssNAI	GTATAC	1 cut(s)	765
BssT1I	CCWWGG	4 cut(s)	123, 675, 820, 1182
Bst1107I	GTATAC	1 cut(s)	765
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	404, 895
Bst6I	CTCTTC	2 cut(s)	58, 164
BstAPI	GCANNNNNTGC	2 cut(s)	434, 1208
BstBI	TTCGAA	1 cut(s)	829
BstC8I	GCNNGC	3 cut(s)	430, 1341, 1425
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	295, 1453
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	149, 582
BstKTI	GATC	6 cut(s)	233, 391, 529, 655, 744, 1222
BstMAI	GTCTC	5 cut(s)	55, 101, 193, 596, 1396
BstMBI	GATC	6 cut(s)	230, 388, 526, 652, 741, 1219
BstMWI	GCNNNNNNNGC	9 cut(s)	308, 434, 803, 812, 1121, 1208, 1340, 1414, 1429
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	4 cut(s)	30, 226, 245, 597
BstSFI	CTRYAG	2 cut(s)	810, 987
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	6 cut(s)	100, 781, 802, 1035, 1273, 1420
BstX2I	RGATCY	1 cut(s)	230
BstXI	CCANNNNNNTGG	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	230
BstZ17I	GTATAC	1 cut(s)	765
BsuRI	GGCC	4 cut(s)	35, 597, 931, 1181
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	295, 1453
BtsI	GCAGTG	1 cut(s)	1341
BtsIMutI	CAGTG	2 cut(s)	409, 1341
Cac8I	GCNNGC	3 cut(s)	430, 1341, 1425
CfoI	GCGC	2 cut(s)	149, 582
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	5 cut(s)	28, 34, 130, 595, 672
Csp6I	GTAC	2 cut(s)	118, 860
CspAI	ACCGGT	1 cut(s)	521
CviAII	CATG	5 cut(s)	281, 286, 332, 451, 1223
CviQI	GTAC	2 cut(s)	118, 860
DpnI	GATC	6 cut(s)	232, 390, 528, 654, 743, 1221
DpnII	GATC	6 cut(s)	230, 388, 526, 652, 741, 1219
EaeI	YGGCCR	1 cut(s)	1179
Eam1104I	CTCTTC	2 cut(s)	58, 164
EarI	CTCTTC	2 cut(s)	58, 164
EciI	GGCGGA	1 cut(s)	190
Eco130I	CCWWGG	4 cut(s)	123, 675, 820, 1182
Eco24I	GRGCYC	1 cut(s)	1281
Eco31I	GGTCTC	1 cut(s)	101
Eco32I	GATATC	1 cut(s)	1261
Eco47I	GGWCC	3 cut(s)	28, 130, 672
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	831
EcoRII	CCWGG	1 cut(s)	597
EcoRV	GATATC	1 cut(s)	1261
EcoT14I	CCWWGG	4 cut(s)	123, 675, 820, 1182
EcoT38I	GRGCYC	1 cut(s)	1281
ErhI	CCWWGG	4 cut(s)	123, 675, 820, 1182
FaeI	CATG	5 cut(s)	284, 289, 335, 454, 1226
FalI	AAGNNNNNCTT	2 cut(s)	1291, 1323
FaqI	GGGAC	2 cut(s)	14, 766
FatI	CATG	5 cut(s)	280, 285, 331, 450, 1222
FbaI	TGATCA	2 cut(s)	388, 652
FblI	GTMKAC	1 cut(s)	764
Fnu4HI	GCNGC	6 cut(s)	114, 795, 816, 1049, 1287, 1409
FokI	GGATG	2 cut(s)	302, 1460
FriOI	GRGCYC	1 cut(s)	1281
Fsp4HI	GCNGC	6 cut(s)	114, 795, 816, 1049, 1287, 1409
FspBI	CTAG	2 cut(s)	347, 798
GlaI	GCGC	2 cut(s)	148, 581
GluI	GCNGC	6 cut(s)	114, 795, 816, 1049, 1287, 1409
GsaI	CCCAGC	1 cut(s)	596
GsuI	CTGGAG	1 cut(s)	1275
HaeIII	GGCC	4 cut(s)	35, 597, 931, 1181
HapII	CCGG	5 cut(s)	32, 133, 227, 247, 522
HhaI	GCGC	2 cut(s)	149, 582
Hin1II	CATG	5 cut(s)	284, 289, 335, 454, 1226
Hin6I	GCGC	2 cut(s)	147, 580
HinP1I	GCGC	2 cut(s)	147, 580
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	3 cut(s)	4, 779, 1142
HpaII	CCGG	5 cut(s)	32, 133, 227, 247, 522
HphI	GGTGA	2 cut(s)	536, 977
Hpy166II	GTNNAC	1 cut(s)	765
Hpy188I	TCNGA	9 cut(s)	235, 267, 384, 393, 612, 746, 983, 1021, 1193
Hpy188III	TCNNGA	5 cut(s)	8, 104, 1003, 1101, 1217
Hpy8I	GTNNAC	1 cut(s)	765
HpyAV	CCTTC	8 cut(s)	48, 79, 229, 262, 272, 560, 794, 913
HpyCH4III	ACNGT	2 cut(s)	404, 895
HpyCH4IV	ACGT	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	9 cut(s)	308, 434, 803, 812, 1121, 1208, 1340, 1414, 1429
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	5 cut(s)	284, 289, 335, 454, 1226
HspAI	GCGC	2 cut(s)	147, 580
Ksp22I	TGATCA	2 cut(s)	388, 652
Kzo9I	GATC	6 cut(s)	230, 388, 526, 652, 741, 1219
LmnI	GCTCC	2 cut(s)	685, 1414
Lsp1109I	GCAGC	6 cut(s)	100, 781, 802, 1035, 1273, 1420
LweI	GCATC	6 cut(s)	488, 760, 1098, 1153, 1198, 1321
MaeI	CTAG	2 cut(s)	347, 798
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	3 cut(s)	839, 965, 1079
MalI	GATC	6 cut(s)	232, 390, 528, 654, 743, 1221
MboI	GATC	6 cut(s)	230, 388, 526, 652, 741, 1219
MboII	GAAGA	4 cut(s)	45, 181, 551, 779
MfeI	CAATTG	1 cut(s)	1203
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	3 cut(s)	198, 1281, 1345
MlsI	TGGCCA	1 cut(s)	1181
MluNI	TGGCCA	1 cut(s)	1181
MlyI	GAGTC	2 cut(s)	788, 1136
MmeI	TCCRAC	1 cut(s)	738
Mox20I	TGGCCA	1 cut(s)	1181
MscI	TGGCCA	1 cut(s)	1181
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	2 cut(s)	1227, 1329
Msp20I	TGGCCA	1 cut(s)	1181
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	5 cut(s)	32, 133, 227, 247, 522
MspR9I	CCNGG	4 cut(s)	32, 228, 247, 599
MunI	CAATTG	1 cut(s)	1203
MvaI	CCWGG	1 cut(s)	599
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	9 cut(s)	308, 434, 803, 812, 1121, 1208, 1340, 1414, 1429
NciI	CCSGG	3 cut(s)	32, 228, 247
NdeII	GATC	6 cut(s)	230, 388, 526, 652, 741, 1219
NlaIII	CATG	5 cut(s)	284, 289, 335, 454, 1226
NlaIV	GGNNCC	5 cut(s)	30, 36, 548, 681, 1027
NmeAIII	GCCGAG	1 cut(s)	179
NmuCI	GTSAC	1 cut(s)	965
NspI	RCATGY	1 cut(s)	335
NspV	TTCGAA	1 cut(s)	829
Pfl23II	CGTACG	1 cut(s)	859
PinAI	ACCGGT	1 cut(s)	521
PkrI	GCNGC	6 cut(s)	115, 796, 817, 1050, 1288, 1410
PleI	GAGTC	2 cut(s)	787, 1136
PpsI	GAGTC	2 cut(s)	787, 1136
PpuMI	RGGWCCY	1 cut(s)	28
PsiI	TTATAA	1 cut(s)	1064
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	597
PspFI	CCCAGC	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	597
PspLI	CGTACG	1 cut(s)	859
PspN4I	GGNNCC	5 cut(s)	30, 36, 548, 681, 1027
PspPI	GGNCC	5 cut(s)	28, 34, 130, 595, 672
PspPPI	RGGWCCY	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	230
RsaI	GTAC	2 cut(s)	119, 861
RsaNI	GTAC	2 cut(s)	118, 860
RseI	CAYNNNNRTG	2 cut(s)	1227, 1329
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	6 cut(s)	114, 795, 816, 1049, 1287, 1409
Sau3AI	GATC	6 cut(s)	230, 388, 526, 652, 741, 1219
Sau96I	GGNCC	5 cut(s)	28, 34, 130, 595, 672
SchI	GAGTC	2 cut(s)	788, 1136
ScrFI	CCNGG	4 cut(s)	32, 228, 247, 599
SduI	GDGCHC	3 cut(s)	198, 1281, 1345
SfaNI	GCATC	6 cut(s)	488, 760, 1098, 1153, 1198, 1321
SfcI	CTRYAG	2 cut(s)	810, 987
SfuI	TTCGAA	1 cut(s)	829
SgrAI	CRCCGGYG	1 cut(s)	521
SinI	GGWCC	3 cut(s)	28, 130, 672
SmiMI	CAYNNNNRTG	2 cut(s)	1227, 1329
SmlI	CTYRAG	3 cut(s)	6, 104, 315
SmoI	CTYRAG	3 cut(s)	6, 104, 315
SsiI	CCGC	4 cut(s)	111, 145, 175, 309
SspMI	CTAG	2 cut(s)	347, 798
StyD4I	CCNGG	4 cut(s)	30, 226, 245, 597
StyI	CCWWGG	4 cut(s)	123, 675, 820, 1182
TaaI	ACNGT	2 cut(s)	404, 895
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	6 cut(s)	439, 565, 685, 829, 1004, 1102
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	2 cut(s)	409, 1341
TseFI	GTSAC	1 cut(s)	965
TseI	GCWGC	6 cut(s)	113, 794, 815, 1048, 1286, 1408
Tsp45I	GTSAC	1 cut(s)	965
TspDTI	ATGAA	4 cut(s)	35, 467, 528, 551
TspGWI	ACGGA	1 cut(s)	1038
TspRI	CASTG	2 cut(s)	409, 1341
VpaK11BI	GGWCC	3 cut(s)	28, 130, 672
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	4 cut(s)	831, 1104, 1360, 1457
XceI	RCATGY	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	764
XspI	CTAG	2 cut(s)	347, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.