Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006513.1

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Forward (+)

36284 .. 37941

Gene Structure 1658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006513.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgttgacattctactatgccttcgtcaagacaaactgtttgctgctcatcacgataaattccattggctgcttcatcgaaaccgtgtaccttgttgtgttcatgatatatgcaacaccaaaatccagggcaccaaacgtgttagggtttgcgttcggaattgttcagatgattatgatcctcgtctacaggaagaaaaccaagatagctgtcttgacggaattccgtctaggtgatctgataccaagcgttgctgctccactaaatgatgacatgacagtagcaattgtcattaattctcgatcggaagctggggacgcaaagaagagttctgaaactgatcatgatcagaatccattggagggccggcccaacggcaaggcgaccttggccgctgcctacggcgtcatcttgagaaggggctcaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

143

Amino Acids

15.69

Weight (kDa)

9.17

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	1 cut(s)	393
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	2 cut(s)	58, 221
AcyI	GRCGYC	1 cut(s)	405
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	362
AflIII	ACRYGT	1 cut(s)	138
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	209, 311
AluI	AGCT	2 cut(s)	209, 311
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	3 cut(s)	364, 368, 390
ApeKI	GCWGC	4 cut(s)	43, 69, 254, 395
ApoI	RAATTY	2 cut(s)	58, 221
ArsI	GACNNNNNNTTYG	2 cut(s)	22, 54
AseI	ATTAAT	1 cut(s)	294
AspS9I	GGNCC	2 cut(s)	364, 369
AsuHPI	GGTGA	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	425
BbvI	GCAGC	4 cut(s)	30, 56, 241, 382
BceAI	ACGGC	2 cut(s)	391, 418
BciT130I	CCWGG	1 cut(s)	127
BclI	TGATCA	2 cut(s)	340, 346
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	187
BisI	GCNGC	5 cut(s)	44, 70, 255, 393, 396
BlsI	GCNGC	5 cut(s)	45, 71, 256, 394, 397
Bme1390I	CCNGG	1 cut(s)	127
BmgT120I	GGNCC	2 cut(s)	364, 369
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	127
BsaBI	GATNNNNATC	3 cut(s)	176, 345, 351
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	126, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse118I	RCCGGY	1 cut(s)	366
Bse8I	GATNNNNATC	3 cut(s)	176, 345, 351
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	126, 387
BseJI	GATNNNNATC	3 cut(s)	176, 345, 351
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	4 cut(s)	30, 56, 241, 382
BseYI	CCCAGC	1 cut(s)	311
Bsh1285I	CGRYCG	1 cut(s)	305
BshFI	GGCC	3 cut(s)	366, 370, 392
BshNI	GGYRCC	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	367
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	3 cut(s)	366, 370, 392
Bsp1286I	GDGCHC	2 cut(s)	133, 425
Bsp143I	GATC	5 cut(s)	177, 235, 302, 340, 346
BspACI	CCGC	1 cut(s)	393
BspANI	GGCC	3 cut(s)	366, 370, 392
BspHI	TCATGA	2 cut(s)	102, 343
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	366
BssECI	CCNNGG	2 cut(s)	126, 387
BssMI	GATC	5 cut(s)	177, 235, 302, 340, 346
BssNI	GRCGYC	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	3 cut(s)	38, 85, 280
Bst6I	CTCTTC	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	368
BstKTI	GATC	5 cut(s)	180, 238, 305, 343, 349
BstMBI	GATC	5 cut(s)	177, 235, 302, 340, 346
BstMCI	CGRYCG	1 cut(s)	305
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 389
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	133
BstV1I	GCAGC	4 cut(s)	30, 56, 241, 382
BsuRI	GGCC	3 cut(s)	366, 370, 392
Cac8I	GCNNGC	1 cut(s)	368
CciI	TCATGA	2 cut(s)	102, 343
Cfr10I	RCCGGY	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	364, 369
CseI	GACGC	2 cut(s)	326, 394
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	3 cut(s)	103, 274, 344
CviJI	RGCY	7 cut(s)	69, 209, 311, 366, 370, 392, 423
CviKI_1	RGCY	7 cut(s)	69, 209, 311, 366, 370, 392, 423
CviQI	GTAC	1 cut(s)	88
DpnI	GATC	5 cut(s)	179, 237, 304, 342, 348
DpnII	GATC	5 cut(s)	177, 235, 302, 340, 346
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	425
EcoRI	GAATTC	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	3 cut(s)	106, 277, 347
FaiI	YATR	7 cut(s)	18, 104, 109, 111, 176, 275, 345
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	3 cut(s)	102, 273, 343
FbaI	TGATCA	2 cut(s)	340, 346
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	5 cut(s)	44, 70, 255, 393, 396
FriOI	GRGCYC	1 cut(s)	425
FseI	GGCCGGCC	1 cut(s)	370
Fsp4HI	GCNGC	5 cut(s)	44, 70, 255, 393, 396
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	5 cut(s)	44, 70, 255, 393, 396
GsaI	CCCAGC	1 cut(s)	315
HaeIII	GGCC	3 cut(s)	366, 370, 392
HapII	CCGG	1 cut(s)	367
HgaI	GACGC	2 cut(s)	326, 394
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	3 cut(s)	106, 277, 347
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	3 cut(s)	6, 88, 187
Hpy188I	TCNGA	6 cut(s)	158, 168, 240, 307, 334, 351
Hpy188III	TCNNGA	7 cut(s)	28, 52, 103, 214, 300, 344, 412
Hpy8I	GTNNAC	3 cut(s)	6, 88, 187
HpyAV	CCTTC	2 cut(s)	31, 411
HpyCH4III	ACNGT	3 cut(s)	38, 85, 280
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 389
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	106, 277, 347
KroI	GCCGGC	1 cut(s)	366
KroNI	GCCGGC	1 cut(s)	368
Ksp22I	TGATCA	2 cut(s)	340, 346
Kzo9I	GATC	5 cut(s)	177, 235, 302, 340, 346
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	5 cut(s)	112, 139, 175, 297, 380
Lsp1109I	GCAGC	4 cut(s)	30, 56, 241, 382
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	138
MalI	GATC	5 cut(s)	179, 237, 304, 342, 348
MboI	GATC	5 cut(s)	177, 235, 302, 340, 346
MboII	GAAGA	2 cut(s)	205, 337
MfeI	CAATTG	1 cut(s)	285
MhlI	GDGCHC	2 cut(s)	133, 425
MluCI	AATT	6 cut(s)	58, 159, 221, 285, 295, 426
MnlI	CCTC	2 cut(s)	191, 355
MroNI	GCCGGC	1 cut(s)	366
MseI	TTAA	2 cut(s)	294, 430
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	127
MunI	CAATTG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	317, 389
NaeI	GCCGGC	1 cut(s)	368
NdeII	GATC	5 cut(s)	177, 235, 302, 340, 346
NgoMIV	GCCGGC	1 cut(s)	366
NlaIII	CATG	3 cut(s)	106, 277, 347
NlaIV	GGNNCC	1 cut(s)	132
PagI	TCATGA	2 cut(s)	102, 343
PdiI	GCCGGC	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	5 cut(s)	45, 71, 256, 394, 397
Ple19I	CGATCG	1 cut(s)	305
PshBI	ATTAAT	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	364, 369
PvuI	CGATCG	1 cut(s)	305
RigI	GGCCGGCC	1 cut(s)	370
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	294, 430
SatI	GCNGC	5 cut(s)	44, 70, 255, 393, 396
Sau3AI	GATC	5 cut(s)	177, 235, 302, 340, 346
Sau96I	GGNCC	2 cut(s)	364, 369
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	2 cut(s)	133, 425
SetI	ASST	6 cut(s)	93, 141, 211, 235, 313, 389
SfcI	CTRYAG	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
Sse9I	AATT	6 cut(s)	58, 159, 221, 285, 295, 426
SsiI	CCGC	1 cut(s)	393
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	3 cut(s)	38, 85, 280
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	78, 301
TasI	AATT	6 cut(s)	58, 159, 221, 285, 295, 426
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	2 cut(s)	294, 430
Tru9I	TTAA	2 cut(s)	294, 430
TseI	GCWGC	4 cut(s)	43, 69, 254, 395
TspDTI	ATGAA	2 cut(s)	64, 91
TspGWI	ACGGA	2 cut(s)	215, 233
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	2 cut(s)	58, 221
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.