Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

36903764 .. 36907130

Gene Structure 3367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0229900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAAGTAGTCGAAGATGTTGTGATTGTGGGAGCTGGAATTTCTGGCCTTACAACCTCCTTGGGACTTCACAGGCTGGGTATTAGAAGCTTAGTGCTGGAATCATTTGATAGCTTGAGGACAACAGGGTTTGCACTCGCAATATGGACTAATGCGTGGAGGGCTTTAGATGCCCTTGGTATTGGCAATGATATCCGGCAGCAACACCAGACTCTTCATGGGAATGTGGCTTTCTCAAGAATTTCAGGGCTTCAGATGTTTGAGAAGTCGTATGAGGTCAAAGGAAAACTTGGAGACCATGAAGTTCGTTGTGTGAAAAGGAACTTGTTGTTGGAATCCCTTGCAAGTGAACTCCCTAGTGGTACCATTAGGTTCTCATCAAAGGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCATCTTGCAGATGGAACCATCCTCAAAGCCAAGGTTTTGGTTGGTTGTGATGGAGTGAACTCAGTGGTGGCAAAATGGCTGGGCTTCAAGAAGCCAGTTTTTAAAGGGAGATCCGCCGTTAGAGGTTGTGCTAATTTCAACAGCAGTCATGGTTTTGATCCCAAGTTCATGCAGTACTTTGGGAATGGTATTAAATCTGGTACCATTCCTTGTAATGATAAAACTGTTTACTGGTTCTTCGGTTGGTATCCCTCCAGCCAAGTGACATATAGGCATCCTTGGGAACTTCTTTGGGGAAATATTAGTAAAGGTAATGTATGCGTTGCTGGAGACGCTCTCCACCCCATGGTCCCAGACATTGGCCAAGGCGGCTGTGCTGCAATAGAAGACGGTGTTGTATTAGCAAGGTGTCTCGGTGAGGCACTGTTGAAGAACCAGGAGCAAGAAAATAAAGATAAAGGTGAAGAAGGAAAAGAAAAATATAAGAGGATTGAAATGGGGCTGAATAAGTATGCCAGTGAGAGGAAATGGAGAAGCATAGATCTCACTAGTACATCTAGTGTGGTTAGTTATATACAGGTAGCTGATGATGGAAAAATAATTGCTTTCTTGAGGGACAAGTTTTTCGCTCCAATCCTGGCCAGGTTGCTGTTTAAGAAGGCTGATTATGATTGTGGGAAGCTCAGGAGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

372

Amino Acids

41.08

Weight (kDa)

9.04

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	6 - 225	5.4e-16	FAD binding domain
DAO	PF01266	6 - 57	9.2e-06	FAD dependent oxidoreductase
FAD_binding_3	PF01494	241 - 284	4.5e-06	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	362, 623
AccB1I	GGYRCC	2 cut(s)	362, 623
AccB7I	CCANNNNNTGG	2 cut(s)	769, 782
AciI	CCGC	2 cut(s)	537, 792
AclWI	GGATC	2 cut(s)	528, 575
AcoI	YGGCCR	2 cut(s)	784, 1062
AcsI	RAATTY	2 cut(s)	39, 240
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	4 cut(s)	364, 599, 625, 976
AfiI	CCNNNNNNNGG	3 cut(s)	769, 782, 945
AgsI	TTSAA	4 cut(s)	511, 562, 853, 917
AhlI	ACTAGT	1 cut(s)	971
AjnI	CCWGG	3 cut(s)	858, 1059, 1064
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	6 cut(s)	35, 90, 114, 418, 1007, 1105
AluI	AGCT	6 cut(s)	35, 90, 114, 418, 1007, 1105
Alw26I	GTCTC	3 cut(s)	288, 747, 839
AlwI	GGATC	2 cut(s)	528, 575
AoxI	GGCC	3 cut(s)	46, 784, 1062
ApeKI	GCWGC	2 cut(s)	199, 800
ApoI	RAATTY	2 cut(s)	39, 240
ArsI	GACNNNNNNTTYG	2 cut(s)	1031, 1063
Asp718I	GGTACC	2 cut(s)	362, 623
AspS9I	GGNCC	1 cut(s)	772
AsuHPI	GGTGA	2 cut(s)	851, 896
AvaII	GGWCC	1 cut(s)	772
BalI	TGGCCA	2 cut(s)	786, 1064
BanI	GGYRCC	2 cut(s)	362, 623
BanII	GRGCYC	1 cut(s)	1115
BbsI	GAAGAC	1 cut(s)	816
BbvI	GCAGC	2 cut(s)	211, 787
BccI	CCATC	4 cut(s)	428, 449, 467, 1007
BceAI	ACGGC	1 cut(s)	524
BciT130I	CCWGG	3 cut(s)	860, 1061, 1066
BciVI	GTATCC	1 cut(s)	681
BcoDI	GTCTC	3 cut(s)	288, 747, 839
BcuI	ACTAGT	1 cut(s)	971
BfaI	CTAG	3 cut(s)	357, 972, 981
BfuI	GTATCC	1 cut(s)	681
BglI	GCCNNNNNGGC	1 cut(s)	792
BglII	AGATCT	1 cut(s)	964
BisI	GCNGC	3 cut(s)	200, 793, 801
BlsI	GCNGC	3 cut(s)	201, 794, 802
BmcAI	AGTACT	1 cut(s)	599
Bme1390I	CCNGG	3 cut(s)	860, 1061, 1066
Bme18I	GGWCC	1 cut(s)	772
BmgT120I	GGNCC	1 cut(s)	772
BmiI	GGNNCC	5 cut(s)	364, 439, 625, 774, 1112
BmrFI	CCNGG	3 cut(s)	860, 1061, 1066
BmsI	GCATC	3 cut(s)	160, 433, 706
BpiI	GAAGAC	1 cut(s)	816
BplI	GAGNNNNNCTC	2 cut(s)	744, 776
BpmI	CTGGAG	2 cut(s)	661, 771
Bpu10I	CCTNAGC	1 cut(s)	1106
BpuEI	CTTGAG	3 cut(s)	136, 220, 1054
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	6 cut(s)	60, 175, 453, 701, 768, 787
Bsc4I	CCNNNNNNNGG	3 cut(s)	769, 782, 945
Bse1I	ACTGG	3 cut(s)	518, 659, 939
Bse3DI	GCAATG	1 cut(s)	193
BseBI	CCWGG	3 cut(s)	860, 1061, 1066
BseDI	CCNNGG	6 cut(s)	60, 175, 453, 701, 768, 787
BseGI	GGATG	2 cut(s)	441, 697
BseLI	CCNNNNNNNGG	3 cut(s)	769, 782, 945
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	3 cut(s)	518, 659, 939
BseXI	GCAGC	2 cut(s)	211, 787
BseYI	CCCAGC	2 cut(s)	76, 502
BshFI	GGCC	3 cut(s)	48, 786, 1064
BshNI	GGYRCC	2 cut(s)	362, 623
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	3 cut(s)	78, 758, 1052
BslI	CCNNNNNNNGG	3 cut(s)	769, 782, 945
BsmAI	GTCTC	3 cut(s)	288, 747, 839
BsmBI	CGTCTC	1 cut(s)	747
BsmFI	GGGAC	3 cut(s)	78, 758, 1052
BsnI	GGCC	3 cut(s)	48, 786, 1064
Bso31I	GGTCTC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	1115
Bsp143I	GATC	3 cut(s)	533, 580, 964
Bsp19I	CCATGG	1 cut(s)	768
BspACI	CCGC	2 cut(s)	537, 792
BspANI	GGCC	3 cut(s)	48, 786, 1064
BspCNI	CTCAG	2 cut(s)	497, 1119
BspLI	GGNNCC	5 cut(s)	364, 439, 625, 774, 1112
BspPI	GGATC	2 cut(s)	528, 575
BspT107I	GGYRCC	2 cut(s)	362, 623
BspTNI	GGTCTC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	193
BsrI	ACTGG	3 cut(s)	518, 659, 939
BssECI	CCNNGG	6 cut(s)	60, 175, 453, 701, 768, 787
BssMI	GATC	3 cut(s)	533, 580, 964
BssT1I	CCWWGG	6 cut(s)	60, 175, 453, 701, 768, 787
Bst2UI	CCWGG	3 cut(s)	860, 1061, 1066
Bst4CI	ACNGT	3 cut(s)	649, 815, 849
Bst6I	CTCTTC	1 cut(s)	219
BstDEI	CTNAG	3 cut(s)	91, 484, 1106
BstDSI	CCRYGG	1 cut(s)	768
BstF5I	GGATG	2 cut(s)	441, 697
BstKTI	GATC	3 cut(s)	536, 583, 967
BstMAI	GTCTC	3 cut(s)	288, 747, 839
BstMBI	GATC	3 cut(s)	533, 580, 964
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 170, 755, 792
BstNI	CCWGG	3 cut(s)	860, 1061, 1066
BstSCI	CCNGG	3 cut(s)	858, 1059, 1064
BstV1I	GCAGC	2 cut(s)	211, 787
BstV2I	GAAGAC	1 cut(s)	816
BstX2I	RGATCY	2 cut(s)	533, 964
BstXI	CCANNNNNNTGG	1 cut(s)	460
BstYI	RGATCY	2 cut(s)	533, 964
BsuI	GTATCC	1 cut(s)	681
BsuRI	GGCC	3 cut(s)	48, 786, 1064
BtgI	CCRYGG	1 cut(s)	768
BtsCI	GGATG	2 cut(s)	441, 697
BtsIMutI	CAGTG	3 cut(s)	492, 845, 946
Cfr13I	GGNCC	1 cut(s)	772
CseI	GACGC	1 cut(s)	764
Csp6I	GTAC	4 cut(s)	363, 598, 624, 975
CviAII	CATG	5 cut(s)	218, 299, 572, 592, 769
CviQI	GTAC	4 cut(s)	363, 598, 624, 975
DdeI	CTNAG	3 cut(s)	91, 484, 1106
DpnI	GATC	3 cut(s)	535, 582, 966
DpnII	GATC	3 cut(s)	533, 580, 964
DraI	TTTAAA	1 cut(s)	526
EaeI	YGGCCR	2 cut(s)	784, 1062
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	526
Eco130I	CCWWGG	6 cut(s)	60, 175, 453, 701, 768, 787
Eco24I	GRGCYC	1 cut(s)	1115
Eco31I	GGTCTC	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	772
Eco57I	CTGAAG	1 cut(s)	236
EcoRII	CCWGG	3 cut(s)	858, 1059, 1064
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	6 cut(s)	60, 175, 453, 701, 768, 787
EcoT38I	GRGCYC	1 cut(s)	1115
ErhI	CCWWGG	6 cut(s)	60, 175, 453, 701, 768, 787
Esp3I	CGTCTC	1 cut(s)	747
FaeI	CATG	5 cut(s)	221, 302, 575, 595, 772
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FaqI	GGGAC	3 cut(s)	78, 758, 1052
FatI	CATG	5 cut(s)	217, 298, 571, 591, 768
Fnu4HI	GCNGC	3 cut(s)	200, 793, 801
FokI	GGATG	2 cut(s)	428, 684
FriOI	GRGCYC	1 cut(s)	1115
Fsp4HI	GCNGC	3 cut(s)	200, 793, 801
FspBI	CTAG	3 cut(s)	357, 972, 981
GluI	GCNGC	3 cut(s)	200, 793, 801
GsaI	CCCAGC	2 cut(s)	80, 506
GsuI	CTGGAG	2 cut(s)	661, 771
HaeIII	GGCC	3 cut(s)	48, 786, 1064
HapII	CCGG	1 cut(s)	196
HgaI	GACGC	1 cut(s)	764
Hin1II	CATG	5 cut(s)	221, 302, 575, 595, 772
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	4 cut(s)	101, 211, 335, 401
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	2 cut(s)	851, 896
Hpy166II	GTNNAC	3 cut(s)	350, 481, 652
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	4 cut(s)	237, 511, 1033, 1108
Hpy8I	GTNNAC	3 cut(s)	350, 481, 652
HpyAV	CCTTC	2 cut(s)	884, 1075
HpyCH4III	ACNGT	3 cut(s)	649, 815, 849
HpyCH4V	TGCA	6 cut(s)	134, 344, 424, 431, 595, 803
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 170, 755, 792
HpyF3I	CTNAG	3 cut(s)	91, 484, 1106
Hsp92II	CATG	5 cut(s)	221, 302, 575, 595, 772
KpnI	GGTACC	2 cut(s)	366, 627
Kzo9I	GATC	3 cut(s)	533, 580, 964
LmnI	GCTCC	4 cut(s)	32, 862, 1057, 1110
Lsp1109I	GCAGC	2 cut(s)	211, 787
LweI	GCATC	3 cut(s)	160, 433, 706
MaeI	CTAG	3 cut(s)	357, 972, 981
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	3 cut(s)	535, 582, 966
MboI	GATC	3 cut(s)	533, 580, 964
MboII	GAAGA	6 cut(s)	26, 206, 652, 821, 865, 899
MflI	RGATCY	2 cut(s)	533, 964
MhlI	GDGCHC	1 cut(s)	1115
MlsI	TGGCCA	2 cut(s)	786, 1064
MluCI	AATT	4 cut(s)	39, 240, 556, 1023
MluNI	TGGCCA	2 cut(s)	786, 1064
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	312
Mox20I	TGGCCA	2 cut(s)	786, 1064
MscI	TGGCCA	2 cut(s)	786, 1064
MseI	TTAA	5 cut(s)	414, 525, 615, 1077, 1117
MslI	CAYNNNNRTG	1 cut(s)	222
Msp20I	TGGCCA	2 cut(s)	786, 1064
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	3 cut(s)	860, 1061, 1066
MvaI	CCWGG	3 cut(s)	860, 1061, 1066
MwoI	GCNNNNNNNGC	4 cut(s)	161, 170, 755, 792
NcoI	CCATGG	1 cut(s)	768
NdeII	GATC	3 cut(s)	533, 580, 964
NlaIII	CATG	5 cut(s)	221, 302, 575, 595, 772
NlaIV	GGNNCC	5 cut(s)	364, 439, 625, 774, 1112
NmuCI	GTSAC	1 cut(s)	685
PfeI	GAWTC	3 cut(s)	101, 335, 401
PflMI	CCANNNNNTGG	2 cut(s)	769, 782
PkrI	GCNGC	3 cut(s)	201, 794, 802
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp6I	CCWGG	3 cut(s)	858, 1059, 1064
PspFI	CCCAGC	2 cut(s)	76, 502
PspGI	CCWGG	3 cut(s)	858, 1059, 1064
PspN4I	GGNNCC	5 cut(s)	364, 439, 625, 774, 1112
PspPI	GGNCC	1 cut(s)	772
PsuI	RGATCY	2 cut(s)	533, 964
RsaI	GTAC	4 cut(s)	364, 599, 625, 976
RsaNI	GTAC	4 cut(s)	363, 598, 624, 975
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	5 cut(s)	414, 525, 615, 1077, 1117
SatI	GCNGC	3 cut(s)	200, 793, 801
Sau3AI	GATC	3 cut(s)	533, 580, 964
Sau96I	GGNCC	1 cut(s)	772
ScaI	AGTACT	1 cut(s)	599
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	3 cut(s)	860, 1061, 1066
SduI	GDGCHC	1 cut(s)	1115
SfaNI	GCATC	3 cut(s)	160, 433, 706
SinI	GGWCC	1 cut(s)	772
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	3 cut(s)	115, 235, 1033
SmoI	CTYRAG	3 cut(s)	115, 235, 1033
SpeI	ACTAGT	1 cut(s)	971
Sse9I	AATT	4 cut(s)	39, 240, 556, 1023
SsiI	CCGC	2 cut(s)	537, 792
SspI	AATATT	1 cut(s)	724
SspMI	CTAG	3 cut(s)	357, 972, 981
StyD4I	CCNGG	3 cut(s)	858, 1059, 1064
StyI	CCWWGG	6 cut(s)	60, 175, 453, 701, 768, 787
TaaI	ACNGT	3 cut(s)	649, 815, 849
TaqI	TCGA	1 cut(s)	12
TasI	AATT	4 cut(s)	39, 240, 556, 1023
TatI	WGTACW	2 cut(s)	597, 974
TauI	GCSGC	1 cut(s)	795
TfiI	GAWTC	3 cut(s)	101, 335, 401
Tru1I	TTAA	5 cut(s)	414, 525, 615, 1077, 1117
Tru9I	TTAA	5 cut(s)	414, 525, 615, 1077, 1117
TscAI	CASTG	3 cut(s)	492, 852, 946
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	2 cut(s)	199, 800
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	3 cut(s)	206, 315, 580
TspRI	CASTG	3 cut(s)	492, 852, 946
Van91I	CCANNNNNTGG	2 cut(s)	769, 782
VpaK11BI	GGWCC	1 cut(s)	772
XapI	RAATTY	2 cut(s)	39, 240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XspI	CTAG	3 cut(s)	357, 972, 981
ZrmI	AGTACT	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.