Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

54607860 .. 54610565

Gene Structure 2706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG357300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTAGCCCCTGATCCTCATACCCTGGCCTCTGTTTTTGGCATGCTAGGTACCCTCGTCTCCTTCCTCGTCTTGCTAGCCCCACTACCGACATTTTATAGGATTTACAAGAGAAAATCAGCAGACGGGTTCCAATCTTTACCATATTCAGTGGCTTTGTTTAGTGCCATGTTAATGCTCTACTATGCTTACATCAAAGAAAATGCTTATTTGCTCTTGGGAATCAATTCCTTTGGCTCCATCATAGAAACTATATACCTTATAGTTTACATGATTTACGCACCATCAAATTCCAGGATTTTCACGGCAAAGCTGCTAGTCCTGTTTAACTTTTTGGCTTATGGGGTGATCGTAGGAGTTACATACCAAATCCCAAATCCTCTTCTGCGGCTTAAAGTCGTTGGCTGGATAAATGTCGTCTTCTCTGTCTGTGTATTTGCTGCCCCTCTAAGTATTCTGGCGCCAAATATCTTAGGGTTTACATTTGGGATGGCTCAGATGATTTTGTTCCTGGTTTACAAGAACACTAAGAGACCCATCTTACCAGAATTCAAACTAAACGAGATGCCAAACAGAGTTGCTGCAGCAAATGATGAAATAATAGTAGCATGCGAAAGTACTACACAAACTGGGCTGAAAACAGGGGAAGGGGAGAATAAGACTAGTTGTGAAGCTGATGGTGATCATGAGAATCAATCACAGACCACTGAGACCAGTACTGTTACTAATGATATTGAGACAAGTCCTGAATCAATTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

253

Amino Acids

27.93

Weight (kDa)

5.43

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 96	5e-19	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	50, 460
AciI	CCGC	1 cut(s)	388
AclWI	GGATC	1 cut(s)	8
AcsI	RAATTY	2 cut(s)	289, 548
AcyI	GRCGYC	1 cut(s)	461
AfaI	GTAC	3 cut(s)	52, 619, 718
AgsI	TTSAA	1 cut(s)	553
AhlI	ACTAGT	1 cut(s)	662
AjnI	CCWGG	3 cut(s)	24, 293, 510
AluBI	AGCT	2 cut(s)	313, 674
AluI	AGCT	2 cut(s)	313, 674
Alw26I	GTCTC	4 cut(s)	64, 526, 704, 731
AlwI	GGATC	1 cut(s)	8
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	4 cut(s)	313, 440, 581, 584
ApoI	RAATTY	2 cut(s)	289, 548
Asp700I	GAANNNNTTC	1 cut(s)	226
Asp718I	GGTACC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	463
AsuHPI	GGTGA	2 cut(s)	358, 692
AsuNHI	GCTAGC	1 cut(s)	76
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BanI	GGYRCC	2 cut(s)	50, 460
BbsI	GAAGAC	1 cut(s)	412
BbvI	GCAGC	4 cut(s)	300, 427, 568, 596
BccI	CCATC	5 cut(s)	248, 292, 484, 545, 671
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	3 cut(s)	26, 295, 512
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	4 cut(s)	64, 526, 704, 731
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	4 cut(s)	47, 77, 317, 663
BfmI	CTRYAG	1 cut(s)	582
BfoI	RGCGCY	1 cut(s)	464
BisI	GCNGC	5 cut(s)	314, 389, 441, 582, 585
BlsI	GCNGC	5 cut(s)	315, 390, 442, 583, 586
BmcAI	AGTACT	2 cut(s)	619, 718
Bme1390I	CCNGG	3 cut(s)	26, 295, 512
BmiI	GGNNCC	4 cut(s)	52, 131, 238, 462
BmrFI	CCNGG	3 cut(s)	26, 295, 512
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	1 cut(s)	555
BmtI	GCTAGC	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	639
BpiI	GAAGAC	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	681
BsaHI	GRCGYC	1 cut(s)	461
BsaI	GGTCTC	2 cut(s)	526, 704
BsaJI	CCNNGG	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	634, 714
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	3 cut(s)	26, 295, 512
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	495
BseJI	GATNNNNATC	1 cut(s)	681
BseMII	CTCAG	2 cut(s)	509, 699
BseNI	ACTGG	2 cut(s)	634, 714
BseXI	GCAGC	4 cut(s)	300, 427, 568, 596
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	2 cut(s)	50, 460
BsmAI	GTCTC	4 cut(s)	64, 526, 704, 731
BsmBI	CGTCTC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	29
Bso31I	GGTCTC	2 cut(s)	526, 704
Bsp143I	GATC	3 cut(s)	13, 348, 682
BspACI	CCGC	1 cut(s)	388
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	508, 700
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	4 cut(s)	52, 131, 238, 462
BspMAI	CTGCAG	1 cut(s)	586
BspOI	GCTAGC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	8
BspT107I	GGYRCC	2 cut(s)	50, 460
BspTNI	GGTCTC	2 cut(s)	526, 704
BsrI	ACTGG	2 cut(s)	634, 714
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	3 cut(s)	13, 348, 682
BssNI	GRCGYC	1 cut(s)	461
Bst2UI	CCWGG	3 cut(s)	26, 295, 512
Bst4CI	ACNGT	1 cut(s)	721
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	1 cut(s)	461
BstC8I	GCNNGC	3 cut(s)	44, 78, 610
BstDEI	CTNAG	5 cut(s)	449, 472, 495, 528, 708
BstF5I	GGATG	1 cut(s)	495
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	3 cut(s)	16, 351, 685
BstMAI	GTCTC	4 cut(s)	64, 526, 704, 731
BstMBI	GATC	3 cut(s)	13, 348, 682
BstNI	CCWGG	3 cut(s)	26, 295, 512
BstNSI	RCATGY	2 cut(s)	46, 612
BstSCI	CCNGG	3 cut(s)	24, 293, 510
BstSFI	CTRYAG	1 cut(s)	582
BstV1I	GCAGC	4 cut(s)	300, 427, 568, 596
BstV2I	GAAGAC	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	495
BtsIMutI	CAGTG	2 cut(s)	156, 705
Cac8I	GCNNGC	3 cut(s)	44, 78, 610
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	1 cut(s)	463
Csp6I	GTAC	3 cut(s)	51, 618, 717
CviAII	CATG	5 cut(s)	43, 169, 271, 609, 686
CviQI	GTAC	3 cut(s)	51, 618, 717
DdeI	CTNAG	5 cut(s)	449, 472, 495, 528, 708
DinI	GGCGCC	1 cut(s)	462
DpnI	GATC	3 cut(s)	15, 350, 684
DpnII	GATC	3 cut(s)	13, 348, 682
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco31I	GGTCTC	2 cut(s)	526, 704
EcoRI	GAATTC	1 cut(s)	548
EcoRII	CCWGG	3 cut(s)	24, 293, 510
EgeI	GGCGCC	1 cut(s)	462
EheI	GGCGCC	1 cut(s)	462
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	5 cut(s)	46, 172, 274, 612, 689
FatI	CATG	5 cut(s)	42, 168, 270, 608, 685
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	5 cut(s)	314, 389, 441, 582, 585
FokI	GGATG	1 cut(s)	502
Fsp4HI	GCNGC	5 cut(s)	314, 389, 441, 582, 585
FspBI	CTAG	4 cut(s)	47, 77, 317, 663
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	5 cut(s)	314, 389, 441, 582, 585
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	463
Hin1I	GRCGYC	1 cut(s)	461
Hin1II	CATG	5 cut(s)	46, 172, 274, 612, 689
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HinfI	GANTC	3 cut(s)	222, 691, 749
HphI	GGTGA	2 cut(s)	358, 692
Hpy166II	GTNNAC	3 cut(s)	268, 480, 517
Hpy188I	TCNGA	1 cut(s)	498
Hpy188III	TCNNGA	2 cut(s)	686, 746
Hpy8I	GTNNAC	3 cut(s)	268, 480, 517
HpyAV	CCTTC	2 cut(s)	73, 641
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4V	TGCA	1 cut(s)	584
HpyF3I	CTNAG	5 cut(s)	449, 472, 495, 528, 708
Hsp92I	GRCGYC	1 cut(s)	461
Hsp92II	CATG	5 cut(s)	46, 172, 274, 612, 689
HspAI	GCGC	1 cut(s)	461
KasI	GGCGCC	1 cut(s)	460
KpnI	GGTACC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	3 cut(s)	13, 348, 682
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	4 cut(s)	300, 427, 568, 596
LweI	GCATC	1 cut(s)	555
MaeI	CTAG	4 cut(s)	47, 77, 317, 663
MaeIII	GTNAC	2 cut(s)	358, 721
MalI	GATC	3 cut(s)	15, 350, 684
MboI	GATC	3 cut(s)	13, 348, 682
MboII	GAAGA	2 cut(s)	374, 412
MfeI	CAATTG	1 cut(s)	753
MluCI	AATT	4 cut(s)	226, 289, 548, 753
Mly113I	GGCGCC	1 cut(s)	461
MnlI	CCTC	6 cut(s)	27, 40, 65, 77, 390, 456
MroXI	GAANNNNTTC	1 cut(s)	226
MseI	TTAA	3 cut(s)	173, 327, 393
MslI	CAYNNNNRTG	1 cut(s)	173
MspR9I	CCNGG	3 cut(s)	26, 295, 512
MunI	CAATTG	1 cut(s)	753
MvaI	CCWGG	3 cut(s)	26, 295, 512
NarI	GGCGCC	1 cut(s)	461
NdeII	GATC	3 cut(s)	13, 348, 682
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	5 cut(s)	46, 172, 274, 612, 689
NlaIV	GGNNCC	4 cut(s)	52, 131, 238, 462
NspI	RCATGY	2 cut(s)	46, 612
PaeI	GCATGC	2 cut(s)	46, 612
PagI	TCATGA	1 cut(s)	685
PdmI	GAANNNNTTC	1 cut(s)	226
PfeI	GAWTC	3 cut(s)	222, 691, 749
PfoI	TCCNGGA	1 cut(s)	293
PkrI	GCNGC	5 cut(s)	315, 390, 442, 583, 586
PluTI	GGCGCC	1 cut(s)	464
Psp6I	CCWGG	3 cut(s)	24, 293, 510
PspGI	CCWGG	3 cut(s)	24, 293, 510
PspN4I	GGNNCC	4 cut(s)	52, 131, 238, 462
PstI	CTGCAG	1 cut(s)	586
RsaI	GTAC	3 cut(s)	52, 619, 718
RsaNI	GTAC	3 cut(s)	51, 618, 717
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	3 cut(s)	173, 327, 393
SatI	GCNGC	5 cut(s)	314, 389, 441, 582, 585
Sau3AI	GATC	3 cut(s)	13, 348, 682
ScaI	AGTACT	2 cut(s)	619, 718
ScrFI	CCNGG	3 cut(s)	26, 295, 512
SetI	ASST	4 cut(s)	52, 261, 315, 676
SfaNI	GCATC	1 cut(s)	555
SfcI	CTRYAG	1 cut(s)	582
SfoI	GGCGCC	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	173
SpeI	ACTAGT	1 cut(s)	662
SphI	GCATGC	2 cut(s)	46, 612
Sse9I	AATT	4 cut(s)	226, 289, 548, 753
SsiI	CCGC	1 cut(s)	388
SspDI	GGCGCC	1 cut(s)	460
SspMI	CTAG	4 cut(s)	47, 77, 317, 663
StyD4I	CCNGG	3 cut(s)	24, 293, 510
TaaI	ACNGT	1 cut(s)	721
TasI	AATT	4 cut(s)	226, 289, 548, 753
TatI	WGTACW	2 cut(s)	617, 716
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	3 cut(s)	222, 691, 749
Tru1I	TTAA	3 cut(s)	173, 327, 393
Tru9I	TTAA	3 cut(s)	173, 327, 393
TscAI	CASTG	2 cut(s)	156, 712
TseI	GCWGC	4 cut(s)	313, 440, 581, 584
TspDTI	ATGAA	1 cut(s)	609
TspRI	CASTG	2 cut(s)	156, 712
XapI	RAATTY	2 cut(s)	289, 548
XceI	RCATGY	2 cut(s)	46, 612
XmnI	GAANNNNTTC	1 cut(s)	226
XspI	CTAG	4 cut(s)	47, 77, 317, 663
ZrmI	AGTACT	2 cut(s)	619, 718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.