Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Forward (+)

14378794 .. 14380850

Gene Structure 2057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011992

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGAGCCCTTGATCTTGATCTTATGGCTTCTGTGTTTGGAATTTTGGGTACCATCGTCGCGTTCCTCGTTTACCTAGCCCCACTACCAACATTCTATTGGATTTTCAAGAAAAAATCAACACAAGGATTCCCATCTATACCCTATTCAGTGGCATTGTTTAGCGCCATGTTGACACTCTACTATGCCTTCGTCAAGACAAACTGTATGCTGCTCATCACGATCAATTCCATTGGCTGCTTCATCGAAACCGTGTACCTTGTTGTGTTCATGATATATGCAACACCAAAATCCAGGACTTTTACAACAAAGCTGCTTATTCTGTTTAATATCTTGGGTTATGGTTTGATGTTATTGTGTACAAGCCTAGTCCCAAATGTTCTTCTGAGGTTGAAAGTTGTTGGGTGGATTACTATTGTGTTCAATGTCTGTGTGTTTGCTGCTCCTCTTACAATTATGAGGCAGGTTATTAAAACAAAGAGTGTGGAGTACATGTCATTCCCTTTGTCAATGAGCTTAACCCTGTGTGCTGTCATGTGGTTCTTCTATGGCCTTTTAATAAGAGATTTATTCATAGCGGCACCAAACGTGTTAGGGTTTGCGTTCGGAATTGTTCAGATGATTATGATCCTCGTCTACAGGAAGAAAACCAAGATAACGGAACTCCGTCTAGGTGATCTGATACCAAGCACAAATATGGTTGCTGCTCCACTAGATGATGACATGACAGTAGCAATTGTCATTAATTCTCGAACCAAAGCTGGGGACGCAAAGAAGAGTTCTGAAACTGATGATGATGATGATGATGACCAGAATCCATTGGAGGGCCGGCCCAAAGGCAAGGCGACCTTGGCCGCTGCCTACGGCGTCATCTTGAGAAGGGGCTCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

298

Amino Acids

32.96

Weight (kDa)

9.1

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 97	8.7e-20	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 217	3.2e-27	Sugar efflux transporter for intercellular exchange
DUF6949	PF22258	138 - 192	1e-05	Family of unknown function (DUF6949)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	50, 580
AccI	GTMKAC	1 cut(s)	636
AccII	CGCG	1 cut(s)	62
AciI	CCGC	2 cut(s)	578, 855
AclWI	GGATC	1 cut(s)	622
AcoI	YGGCCR	1 cut(s)	852
AcsI	RAATTY	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	867
AfaI	GTAC	4 cut(s)	52, 257, 361, 491
AfiI	CCNNNNNNNGG	2 cut(s)	762, 824
AflIII	ACRYGT	2 cut(s)	492, 588
AgsI	TTSAA	3 cut(s)	109, 394, 424
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	3 cut(s)	313, 516, 761
AluI	AGCT	3 cut(s)	313, 516, 761
AlwI	GGATC	1 cut(s)	622
AoxI	GGCC	4 cut(s)	550, 826, 830, 852
ApeKI	GCWGC	6 cut(s)	211, 237, 313, 440, 704, 857
ApoI	RAATTY	1 cut(s)	42
AseI	ATTAAT	1 cut(s)	744
Asp718I	GGTACC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	826, 831
AsuHPI	GGTGA	1 cut(s)	686
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BanI	GGYRCC	2 cut(s)	50, 580
BanII	GRGCYC	2 cut(s)	10, 887
BbvI	GCAGC	6 cut(s)	198, 224, 300, 427, 691, 844
BccI	CCATC	2 cut(s)	62, 142
BceAI	ACGGC	1 cut(s)	880
BciT130I	CCWGG	1 cut(s)	295
BfaI	CTAG	4 cut(s)	77, 368, 671, 713
BfmI	CTRYAG	1 cut(s)	637
BfoI	RGCGCY	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	454
BisI	GCNGC	8 cut(s)	212, 238, 314, 441, 579, 705, 855, 858
BlsI	GCNGC	8 cut(s)	213, 239, 315, 442, 580, 706, 856, 859
Bme1390I	CCNGG	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	826, 831
BmiI	GGNNCC	3 cut(s)	7, 52, 582
BmrFI	CCNGG	1 cut(s)	295
BsaBI	GATNNNNATC	3 cut(s)	18, 133, 626
BsaHI	GRCGYC	1 cut(s)	867
BsaJI	CCNNGG	1 cut(s)	849
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	762, 824
Bse118I	RCCGGY	1 cut(s)	828
Bse8I	GATNNNNATC	3 cut(s)	18, 133, 626
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	849
BseJI	GATNNNNATC	3 cut(s)	18, 133, 626
BseLI	CCNNNNNNNGG	2 cut(s)	762, 824
BseMII	CTCAG	1 cut(s)	377
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	6 cut(s)	198, 224, 300, 427, 691, 844
BseYI	CCCAGC	1 cut(s)	761
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	4 cut(s)	552, 828, 832, 854
BshNI	GGYRCC	2 cut(s)	50, 580
BsiSI	CCGG	1 cut(s)	829
BslFI	GGGAC	2 cut(s)	356, 779
BslI	CCNNNNNNNGG	2 cut(s)	762, 824
BsmFI	GGGAC	2 cut(s)	356, 779
BsnI	GGCC	4 cut(s)	552, 828, 832, 854
Bsp1286I	GDGCHC	2 cut(s)	10, 887
Bsp1407I	TGTACA	1 cut(s)	359
Bsp143I	GATC	5 cut(s)	13, 19, 222, 627, 676
BspACI	CCGC	2 cut(s)	578, 855
BspANI	GGCC	4 cut(s)	552, 828, 832, 854
BspCNI	CTCAG	1 cut(s)	378
BspFNI	CGCG	1 cut(s)	62
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	3 cut(s)	7, 52, 582
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	622
BspT107I	GGYRCC	2 cut(s)	50, 580
BsrFI	RCCGGY	1 cut(s)	828
BsrGI	TGTACA	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	828
BssECI	CCNNGG	1 cut(s)	849
BssMI	GATC	5 cut(s)	13, 19, 222, 627, 676
BssNI	GRCGYC	1 cut(s)	867
BssT1I	CCWWGG	1 cut(s)	849
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	3 cut(s)	206, 253, 730
Bst6I	CTCTTC	1 cut(s)	770
BstACI	GRCGYC	1 cut(s)	867
BstAUI	TGTACA	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	830
BstDEI	CTNAG	1 cut(s)	386
BstFNI	CGCG	1 cut(s)	62
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	5 cut(s)	16, 22, 225, 630, 679
BstMBI	GATC	5 cut(s)	13, 19, 222, 627, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	767, 851
BstNI	CCWGG	1 cut(s)	295
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	637
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	6 cut(s)	198, 224, 300, 427, 691, 844
BsuRI	GGCC	4 cut(s)	552, 828, 832, 854
BtsIMutI	CAGTG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	830
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	828
Cfr13I	GGNCC	2 cut(s)	826, 831
CseI	GACGC	2 cut(s)	776, 856
Csp6I	GTAC	4 cut(s)	51, 256, 360, 490
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	5 cut(s)	169, 271, 493, 535, 724
CviQI	GTAC	4 cut(s)	51, 256, 360, 490
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	5 cut(s)	15, 21, 224, 629, 678
DpnII	GATC	5 cut(s)	13, 19, 222, 627, 676
EaeI	YGGCCR	1 cut(s)	852
Eam1104I	CTCTTC	1 cut(s)	770
EarI	CTCTTC	1 cut(s)	770
Eco130I	CCWWGG	1 cut(s)	849
Eco24I	GRGCYC	2 cut(s)	10, 887
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	849
EcoT38I	GRGCYC	2 cut(s)	10, 887
ErhI	CCWWGG	1 cut(s)	849
FaeI	CATG	5 cut(s)	172, 274, 496, 538, 727
FalI	AAGNNNNNCTT	2 cut(s)	833, 865
FaqI	GGGAC	2 cut(s)	356, 779
FatI	CATG	5 cut(s)	168, 270, 492, 534, 723
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	8 cut(s)	212, 238, 314, 441, 579, 705, 855, 858
FriOI	GRGCYC	2 cut(s)	10, 887
FseI	GGCCGGCC	1 cut(s)	832
Fsp4HI	GCNGC	8 cut(s)	212, 238, 314, 441, 579, 705, 855, 858
FspBI	CTAG	4 cut(s)	77, 368, 671, 713
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	8 cut(s)	212, 238, 314, 441, 579, 705, 855, 858
GsaI	CCCAGC	1 cut(s)	765
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	4 cut(s)	552, 828, 832, 854
HapII	CCGG	1 cut(s)	829
HgaI	GACGC	2 cut(s)	776, 856
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	867
Hin1II	CATG	5 cut(s)	172, 274, 496, 538, 727
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	129, 814
HpaII	CCGG	1 cut(s)	829
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	5 cut(s)	73, 174, 256, 360, 637
Hpy188I	TCNGA	5 cut(s)	387, 608, 618, 681, 784
Hpy188III	TCNNGA	7 cut(s)	17, 109, 196, 220, 271, 750, 874
Hpy8I	GTNNAC	5 cut(s)	73, 174, 256, 360, 637
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	199, 873
HpyCH4III	ACNGT	3 cut(s)	206, 253, 730
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	767, 851
HpyF3I	CTNAG	1 cut(s)	386
HpySE526I	ACGT	1 cut(s)	588
Hsp92I	GRCGYC	1 cut(s)	867
Hsp92II	CATG	5 cut(s)	172, 274, 496, 538, 727
HspAI	GCGC	1 cut(s)	165
KpnI	GGTACC	1 cut(s)	54
KroI	GCCGGC	1 cut(s)	828
KroNI	GCCGGC	1 cut(s)	830
Kzo9I	GATC	5 cut(s)	13, 19, 222, 627, 676
LmnI	GCTCC	3 cut(s)	5, 448, 712
LpnPI	CCDG	8 cut(s)	280, 307, 449, 536, 625, 747, 824, 842
Lsp1109I	GCAGC	6 cut(s)	198, 224, 300, 427, 691, 844
MaeI	CTAG	4 cut(s)	77, 368, 671, 713
MaeII	ACGT	1 cut(s)	588
MalI	GATC	5 cut(s)	15, 21, 224, 629, 678
MboI	GATC	5 cut(s)	13, 19, 222, 627, 676
MboII	GAAGA	4 cut(s)	374, 535, 655, 787
MfeI	CAATTG	1 cut(s)	735
MhlI	GDGCHC	2 cut(s)	10, 887
MluCI	AATT	7 cut(s)	42, 226, 453, 609, 735, 745, 888
MnlI	CCTC	6 cut(s)	77, 381, 453, 456, 641, 817
MroNI	GCCGGC	1 cut(s)	828
MseI	TTAA	6 cut(s)	327, 471, 518, 557, 744, 892
MslI	CAYNNNNRTG	1 cut(s)	695
MspA1I	CMGCKG	1 cut(s)	857
MspI	CCGG	1 cut(s)	829
MspR9I	CCNGG	1 cut(s)	295
MunI	CAATTG	1 cut(s)	735
MvaI	CCWGG	1 cut(s)	295
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	767, 851
NaeI	GCCGGC	1 cut(s)	830
NdeII	GATC	5 cut(s)	13, 19, 222, 627, 676
NgoMIV	GCCGGC	1 cut(s)	828
NlaIII	CATG	5 cut(s)	172, 274, 496, 538, 727
NlaIV	GGNNCC	3 cut(s)	7, 52, 582
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	1 cut(s)	270
PciI	ACATGT	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PdiI	GCCGGC	1 cut(s)	830
PfeI	GAWTC	2 cut(s)	129, 814
PfoI	TCCNGGA	1 cut(s)	293
PkrI	GCNGC	8 cut(s)	213, 239, 315, 442, 580, 706, 856, 859
PscI	ACATGT	1 cut(s)	492
PshBI	ATTAAT	1 cut(s)	744
Psp6I	CCWGG	1 cut(s)	293
PspFI	CCCAGC	1 cut(s)	761
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	3 cut(s)	7, 52, 582
PspPI	GGNCC	2 cut(s)	826, 831
RigI	GGCCGGCC	1 cut(s)	832
RsaI	GTAC	4 cut(s)	52, 257, 361, 491
RsaNI	GTAC	4 cut(s)	51, 256, 360, 490
RseI	CAYNNNNRTG	1 cut(s)	695
SaqAI	TTAA	6 cut(s)	327, 471, 518, 557, 744, 892
SatI	GCNGC	8 cut(s)	212, 238, 314, 441, 579, 705, 855, 858
Sau3AI	GATC	5 cut(s)	13, 19, 222, 627, 676
Sau96I	GGNCC	2 cut(s)	826, 831
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	2 cut(s)	10, 887
SfcI	CTRYAG	1 cut(s)	637
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	1 cut(s)	874
SmoI	CTYRAG	1 cut(s)	874
Sse9I	AATT	7 cut(s)	42, 226, 453, 609, 735, 745, 888
SsiI	CCGC	2 cut(s)	578, 855
SspMI	CTAG	4 cut(s)	77, 368, 671, 713
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	3 cut(s)	206, 253, 730
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	2 cut(s)	246, 751
TasI	AATT	7 cut(s)	42, 226, 453, 609, 735, 745, 888
TatI	WGTACW	2 cut(s)	359, 489
TauI	GCSGC	2 cut(s)	581, 857
TfiI	GAWTC	2 cut(s)	129, 814
Tru1I	TTAA	6 cut(s)	327, 471, 518, 557, 744, 892
Tru9I	TTAA	6 cut(s)	327, 471, 518, 557, 744, 892
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	6 cut(s)	211, 237, 313, 440, 704, 857
TspDTI	ATGAA	3 cut(s)	232, 259, 562
TspGWI	ACGGA	2 cut(s)	656, 674
TspRI	CASTG	1 cut(s)	156
VspI	ATTAAT	1 cut(s)	744
XapI	RAATTY	1 cut(s)	42
XceI	RCATGY	1 cut(s)	496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	96
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	4 cut(s)	77, 368, 671, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.