Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

54567004 .. 54569388

Gene Structure 2385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG357100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTTGACGCTCTACTATGCCTTCCTCAAGACACATTCTATGATTATCATCGCTATCAATTCCCTTGGCATCTTAATTGAAACCGGGTACCTTGTATTGTTCATGATTTATGCACCACCAAAATCCAGGATCTTCACAGCAAAGTTTCTTGGCCTCTTTAATGTTTTGGGTTTTGGTTTGATCGTATTATGTACATGCCTAATCCCAAATGATTTTCTGCGGTTGAAAATTGTTGGGTGGGTTACTATCGTGTTTAATGTTGGTGTATTTGCTGCTCCTCTTACTATTCTGAAACACGTGATCAAAACAAAGAGTTGCGAGTTCATGTCATTCTCTTTGTCATTAAGCTTAACCCTATGTGCTGTCCTTTGGTTCTTCTATGGCCTTCTAATAAGAGATTTATTCATAGCGGCACCAAACGTGTTAGGGTTTATATTCGGGATTGTGCAGATGATGATGTTCTACATCTACCGGAAGAGCACAAGGAAAGCTGGTTTACCGATAGATAGTCTAAATGATCAGACACTAAGCACAAACAGGCGGGTTGCTGTTCTGGAAAATGCTGACATGAGAGTAGCAATGACAATAATTGACATTGGTACTCAGATTCAGTTGAAAGCAGGGGACGCAAAGAAGAGTGTTAAAACTGATGATCATGAGAATCAACTACCAAAGCAGGGGCGGCCGGAAGACAAGGGGTCGCCCACCACCGCCTTGGGACTCACACTCAGAAGGGCCTCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

248

Amino Acids

27.68

Weight (kDa)

9.64

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	4 - 41	7.2e-06	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	77 - 161	1.2e-26	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	87
AccB1I	GGYRCC	2 cut(s)	87, 412
AciI	CCGC	5 cut(s)	220, 410, 541, 682, 711
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	683
AcvI	CACGTG	1 cut(s)	298
AfaI	GTAC	3 cut(s)	89, 193, 601
AfiI	CCNNNNNNNGG	1 cut(s)	677
AflIII	ACRYGT	2 cut(s)	295, 420
AgsI	TTSAA	3 cut(s)	80, 226, 616
AhdI	GACNNNNNGTC	1 cut(s)	697
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	348, 491
AluI	AGCT	2 cut(s)	348, 491
Alw21I	GWGCWC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	4 cut(s)	151, 382, 683, 735
ApeKI	GCWGC	1 cut(s)	272
Asp718I	GGTACC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	735
AsuC2I	CCSGG	1 cut(s)	85
BanI	GGYRCC	2 cut(s)	87, 412
BbrPI	CACGTG	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	696
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	127
BclI	TGATCA	3 cut(s)	300, 517, 652
BcnI	CCSGG	1 cut(s)	85
BisI	GCNGC	3 cut(s)	273, 411, 683
BlsI	GCNGC	3 cut(s)	274, 412, 684
Bme1390I	CCNGG	2 cut(s)	85, 127
BmeRI	GACNNNNNGTC	1 cut(s)	697
BmgT120I	GGNCC	1 cut(s)	735
BmiI	GGNNCC	2 cut(s)	89, 414
BmrFI	CCNGG	2 cut(s)	85, 127
BmsI	GCATC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	85
BsaAI	YACGTR	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	64, 714
BsaWI	WCCGGW	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	1 cut(s)	677
Bse3DI	GCAATG	1 cut(s)	585
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	64, 714
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	677
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	2 cut(s)	617, 742
BseRI	GAGGAG	1 cut(s)	267
BseX3I	CGGCCG	1 cut(s)	683
BseXI	GCAGC	1 cut(s)	259
BsgI	GTGCAG	1 cut(s)	467
Bsh1285I	CGRYCG	1 cut(s)	686
BshFI	GGCC	4 cut(s)	153, 384, 685, 737
BshNI	GGYRCC	2 cut(s)	87, 412
BsiEI	CGRYCG	1 cut(s)	686
BsiHKAI	GWGCWC	1 cut(s)	482
BsiSI	CCGG	3 cut(s)	84, 472, 686
BslFI	GGGAC	2 cut(s)	638, 732
BslI	CCNNNNNNNGG	1 cut(s)	677
BsmFI	GGGAC	2 cut(s)	638, 732
BsnI	GGCC	4 cut(s)	153, 384, 685, 737
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp1407I	TGTACA	1 cut(s)	191
Bsp143I	GATC	5 cut(s)	129, 180, 300, 517, 652
BspACI	CCGC	5 cut(s)	220, 410, 541, 682, 711
BspANI	GGCC	4 cut(s)	153, 384, 685, 737
BspCNI	CTCAG	2 cut(s)	616, 741
BspHI	TCATGA	2 cut(s)	102, 655
BspLI	GGNNCC	2 cut(s)	89, 414
BspPI	GGATC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	470
BspT107I	GGYRCC	2 cut(s)	87, 412
BsrDI	GCAATG	1 cut(s)	585
BsrGI	TGTACA	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	64, 714
BssMI	GATC	5 cut(s)	129, 180, 300, 517, 652
BssT1I	CCWWGG	2 cut(s)	64, 714
Bst2UI	CCWGG	1 cut(s)	127
Bst6I	CTCTTC	2 cut(s)	470, 629
BstAUI	TGTACA	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	298
BstDEI	CTNAG	3 cut(s)	527, 603, 728
BstKTI	GATC	5 cut(s)	132, 183, 303, 520, 655
BstMBI	GATC	5 cut(s)	129, 180, 300, 517, 652
BstMCI	CGRYCG	1 cut(s)	686
BstMWI	GCNNNNNNNGC	2 cut(s)	626, 682
BstNI	CCWGG	1 cut(s)	127
BstNSI	RCATGY	1 cut(s)	198
BstSCI	CCNGG	2 cut(s)	83, 125
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	1 cut(s)	129
BstXI	CCANNNNNNTGG	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	129
BstZI	CGGCCG	1 cut(s)	683
BsuRI	GGCC	4 cut(s)	153, 384, 685, 737
BtgZI	GCGATG	1 cut(s)	34
CciI	TCATGA	2 cut(s)	102, 655
Cfr13I	GGNCC	1 cut(s)	735
CseI	GACGC	2 cut(s)	16, 635
Csp6I	GTAC	3 cut(s)	88, 192, 600
CviAII	CATG	5 cut(s)	103, 195, 325, 568, 656
CviJI	RGCY	6 cut(s)	153, 348, 384, 491, 685, 737
CviKI_1	RGCY	6 cut(s)	153, 348, 384, 491, 685, 737
CviQI	GTAC	3 cut(s)	88, 192, 600
DdeI	CTNAG	3 cut(s)	527, 603, 728
DpnI	GATC	5 cut(s)	131, 182, 302, 519, 654
DpnII	GATC	5 cut(s)	129, 180, 300, 517, 652
DriI	GACNNNNNGTC	1 cut(s)	697
EaeI	YGGCCR	1 cut(s)	683
EagI	CGGCCG	1 cut(s)	683
Eam1104I	CTCTTC	2 cut(s)	470, 629
Eam1105I	GACNNNNNGTC	1 cut(s)	697
EarI	CTCTTC	2 cut(s)	470, 629
EclXI	CGGCCG	1 cut(s)	683
Eco130I	CCWWGG	2 cut(s)	64, 714
Eco52I	CGGCCG	1 cut(s)	683
Eco72I	CACGTG	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	735
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	2 cut(s)	64, 714
ErhI	CCWWGG	2 cut(s)	64, 714
FaeI	CATG	5 cut(s)	106, 198, 328, 571, 659
FaqI	GGGAC	2 cut(s)	638, 732
FatI	CATG	5 cut(s)	102, 194, 324, 567, 655
FauI	CCCGC	1 cut(s)	534
FbaI	TGATCA	3 cut(s)	300, 517, 652
Fnu4HI	GCNGC	3 cut(s)	273, 411, 683
Fsp4HI	GCNGC	3 cut(s)	273, 411, 683
GluI	GCNGC	3 cut(s)	273, 411, 683
HaeIII	GGCC	4 cut(s)	153, 384, 685, 737
HapII	CCGG	3 cut(s)	84, 472, 686
HgaI	GACGC	2 cut(s)	16, 635
Hin1II	CATG	5 cut(s)	106, 198, 328, 571, 659
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	3 cut(s)	607, 661, 720
HpaII	CCGG	3 cut(s)	84, 472, 686
Hpy166II	GTNNAC	2 cut(s)	6, 497
Hpy188I	TCNGA	4 cut(s)	291, 522, 606, 731
Hpy188III	TCNNGA	5 cut(s)	28, 103, 439, 554, 656
Hpy8I	GTNNAC	2 cut(s)	6, 497
HpyAV	CCTTC	3 cut(s)	31, 395, 726
HpyCH4IV	ACGT	2 cut(s)	297, 420
HpyCH4V	TGCA	2 cut(s)	113, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	626, 682
HpyF3I	CTNAG	3 cut(s)	527, 603, 728
HpySE526I	ACGT	2 cut(s)	297, 420
Hsp92II	CATG	5 cut(s)	106, 198, 328, 571, 659
KpnI	GGTACC	1 cut(s)	91
Ksp22I	TGATCA	3 cut(s)	300, 517, 652
Kzo9I	GATC	5 cut(s)	129, 180, 300, 517, 652
LguI	GCTCTTC	1 cut(s)	470
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	1 cut(s)	78
MaeII	ACGT	2 cut(s)	297, 420
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	5 cut(s)	131, 182, 302, 519, 654
MboI	GATC	5 cut(s)	129, 180, 300, 517, 652
MboII	GAAGA	5 cut(s)	124, 367, 487, 646, 701
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	4 cut(s)	58, 75, 228, 588
MlyI	GAGTC	1 cut(s)	714
MnlI	CCTC	3 cut(s)	35, 164, 288
MseI	TTAA	6 cut(s)	74, 159, 255, 344, 350, 642
MspI	CCGG	3 cut(s)	84, 472, 686
MspR9I	CCNGG	2 cut(s)	85, 127
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	626, 682
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	5 cut(s)	129, 180, 300, 517, 652
NlaIII	CATG	5 cut(s)	106, 198, 328, 571, 659
NlaIV	GGNNCC	2 cut(s)	89, 414
NspI	RCATGY	1 cut(s)	198
PagI	TCATGA	2 cut(s)	102, 655
PciSI	GCTCTTC	1 cut(s)	470
PfeI	GAWTC	2 cut(s)	607, 661
PfoI	TCCNGGA	1 cut(s)	125
PkrI	GCNGC	3 cut(s)	274, 412, 684
PleI	GAGTC	1 cut(s)	714
PmaCI	CACGTG	1 cut(s)	298
PmlI	CACGTG	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	714
Ppu21I	YACGTR	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	125
PspCI	CACGTG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	2 cut(s)	89, 414
PspPI	GGNCC	1 cut(s)	735
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	3 cut(s)	89, 193, 601
RsaNI	GTAC	3 cut(s)	88, 192, 600
SapI	GCTCTTC	1 cut(s)	470
SaqAI	TTAA	6 cut(s)	74, 159, 255, 344, 350, 642
SatI	GCNGC	3 cut(s)	273, 411, 683
Sau3AI	GATC	5 cut(s)	129, 180, 300, 517, 652
Sau96I	GGNCC	1 cut(s)	735
SchI	GAGTC	1 cut(s)	714
ScrFI	CCNGG	2 cut(s)	85, 127
SduI	GDGCHC	1 cut(s)	482
SetI	ASST	5 cut(s)	93, 300, 350, 423, 493
SfaNI	GCATC	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	4 cut(s)	58, 75, 228, 588
SsiI	CCGC	5 cut(s)	220, 410, 541, 682, 711
StyD4I	CCNGG	2 cut(s)	83, 125
StyI	CCWWGG	2 cut(s)	64, 714
TaiI	ACGT	2 cut(s)	300, 423
TasI	AATT	4 cut(s)	58, 75, 228, 588
TatI	WGTACW	1 cut(s)	191
TauI	GCSGC	2 cut(s)	413, 685
TfiI	GAWTC	2 cut(s)	607, 661
Tru1I	TTAA	6 cut(s)	74, 159, 255, 344, 350, 642
Tru9I	TTAA	6 cut(s)	74, 159, 255, 344, 350, 642
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	3 cut(s)	91, 313, 394
XceI	RCATGY	1 cut(s)	198
XcmI	CCANNNNNNNNNTGG	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.