Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

21697139 .. 21698821

Gene Structure 1683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G253500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCAGCCCCTGATGCTTTCCTCTTGGCCTCTGTTTTTGGTATTCTAGGTAACATCGTGGCCTTCATGGTGTACCTAGCGCCACTGCCAACATTTTATAGAATTTTCAAGAAAAAATCAACAGAAGGGTTCCAGTCCATACCTTATTCGGTGGCTCTGTTTAGCGCCATGCTTATGCTCTACTATGCCTTCCTCAAGACCAATGCTTTTATGCTCATCACCATCAACTCCGTTGGTTGCATCATAGAAACCAGTTACCTTGTAATGTACATGATTTATGCACCAGCAAAAACCAGGATTTACACAGCAAAGCTTCTTGTCCTTTTTAATGTGGGGGTTTATGGTGTGATCGTATTGAGCACCTACCTAATTCCAAATCATTTTCTGCGGATTAAAGTTGTTGGGTGGATTAGTGTTGTGTTCTCTGTCTGTGTGTTTGCTGCTCCTCTGAGTATAATGAGGCTAGTTATTAGAACGAGGAGTGTGGAGTTCATGTCCTTCCCTTTGTCATTCTGCTTAACTCTCTGTGCTGTAATGTGGTTCTTCTATGGCCTTCTAGTGAGGGATTTGTTCATAGCGGCACCAAACATCCTCGGTTTCGCATTCGGGTTAGCGCAGATGATTATGTATCTGATGTTCAAGAACTCAAAGAAATCTATGTTACCAGAATTTAGCCTCAATCAGATACCAAATGTGGTTGCAGTAAATGACATTGTAGCAAGTGACAGTCAATTGAAAACAGAGGACACAAAGAAGAGTTCTGAAGCTGAGGAGAATCAGTCAACAGAGAGCATGACAAATGATAGAAGGGCTGGAGATGCAGCTGCTGCTGAGCCAAATGAATCAATTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

285

Amino Acids

31.7

Weight (kDa)

8.79

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	580
AciI	CCGC	2 cut(s)	388, 578
AcsI	RAATTY	2 cut(s)	102, 668
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	2 cut(s)	74, 269
AgsI	TTSAA	3 cut(s)	109, 640, 736
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	3 cut(s)	313, 767, 824
AluI	AGCT	3 cut(s)	313, 767, 824
Alw21I	GWGCWC	1 cut(s)	362
AlwNI	CAGNNNCTG	2 cut(s)	11, 827
AoxI	GGCC	3 cut(s)	27, 60, 550
ApeKI	GCWGC	5 cut(s)	5, 440, 821, 824, 827
ApoI	RAATTY	2 cut(s)	102, 668
AspLEI	GCGC	3 cut(s)	82, 167, 616
AsuHPI	GGTGA	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	362
BbvCI	CCTCAGC	1 cut(s)	768
BbvI	GCAGC	5 cut(s)	17, 427, 811, 814, 833
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	295
BfaI	CTAG	4 cut(s)	47, 77, 464, 557
BfoI	RGCGCY	2 cut(s)	83, 168
BisI	GCNGC	6 cut(s)	6, 441, 579, 822, 825, 828
BlpI	GCTNAGC	1 cut(s)	831
BlsI	GCNGC	6 cut(s)	7, 442, 580, 823, 826, 829
Bme1390I	CCNGG	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	131, 582
BmrFI	CCNGG	1 cut(s)	295
BmsI	GCATC	3 cut(s)	4, 249, 808
BpmI	CTGGAG	1 cut(s)	834
Bpu10I	CCTNAGC	1 cut(s)	768
Bpu1102I	GCTNAGC	1 cut(s)	831
BpuEI	CTTGAG	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	592
BsaXI	ACNNNNNCTCC	4 cut(s)	479, 509, 764, 794
Bse1I	ACTGG	2 cut(s)	133, 252
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	592
BseGI	GGATG	1 cut(s)	588
BseMII	CTCAG	3 cut(s)	440, 759, 822
BseNI	ACTGG	2 cut(s)	133, 252
BseRI	GAGGAG	3 cut(s)	435, 493, 785
BseXI	GCAGC	5 cut(s)	17, 427, 811, 814, 833
BshFI	GGCC	3 cut(s)	29, 62, 552
BshNI	GGYRCC	1 cut(s)	580
BsiHKAI	GWGCWC	1 cut(s)	362
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	3 cut(s)	29, 62, 552
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp1407I	TGTACA	1 cut(s)	267
Bsp143I	GATC	1 cut(s)	348
Bsp1720I	GCTNAGC	1 cut(s)	831
BspACI	CCGC	2 cut(s)	388, 578
BspANI	GGCC	3 cut(s)	29, 62, 552
BspCNI	CTCAG	3 cut(s)	441, 760, 823
BspLI	GGNNCC	2 cut(s)	131, 582
BspT107I	GGYRCC	1 cut(s)	580
BsrGI	TGTACA	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	133, 252
BssECI	CCNNGG	1 cut(s)	592
BssMI	GATC	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	728
Bst6I	CTCTTC	1 cut(s)	749
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstAUI	TGTACA	1 cut(s)	267
BstDEI	CTNAG	3 cut(s)	449, 768, 831
BstF5I	GGATG	1 cut(s)	588
BstH2I	RGCGCY	2 cut(s)	83, 168
BstHHI	GCGC	3 cut(s)	82, 167, 616
BstKTI	GATC	1 cut(s)	351
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 818, 827
BstNI	CCWGG	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	293
BstV1I	GCAGC	5 cut(s)	17, 427, 811, 814, 833
BsuRI	GGCC	3 cut(s)	29, 62, 552
BtsCI	GGATG	1 cut(s)	588
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	83
CaiI	CAGNNNCTG	2 cut(s)	11, 827
CfoI	GCGC	3 cut(s)	82, 167, 616
Csp6I	GTAC	2 cut(s)	73, 268
CviAII	CATG	5 cut(s)	67, 169, 271, 493, 793
CviQI	GTAC	2 cut(s)	73, 268
DdeI	CTNAG	3 cut(s)	449, 768, 831
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	749
EarI	CTCTTC	1 cut(s)	749
Eco57I	CTGAAG	1 cut(s)	783
EcoRII	CCWGG	1 cut(s)	293
FaeI	CATG	5 cut(s)	70, 172, 274, 496, 796
FatI	CATG	5 cut(s)	66, 168, 270, 492, 792
Fnu4HI	GCNGC	6 cut(s)	6, 441, 579, 822, 825, 828
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	6 cut(s)	6, 441, 579, 822, 825, 828
FspBI	CTAG	4 cut(s)	47, 77, 464, 557
GlaI	GCGC	3 cut(s)	81, 166, 615
GluI	GCNGC	6 cut(s)	6, 441, 579, 822, 825, 828
GsuI	CTGGAG	1 cut(s)	834
HaeII	RGCGCY	2 cut(s)	83, 168
HaeIII	GGCC	3 cut(s)	29, 62, 552
HhaI	GCGC	3 cut(s)	82, 167, 616
Hin1II	CATG	5 cut(s)	70, 172, 274, 496, 796
Hin6I	GCGC	3 cut(s)	80, 165, 614
HinP1I	GCGC	3 cut(s)	80, 165, 614
HincII	GTYRAC	1 cut(s)	783
HindII	GTYRAC	1 cut(s)	783
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	2 cut(s)	775, 842
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	2 cut(s)	73, 783
Hpy188I	TCNGA	4 cut(s)	450, 633, 684, 763
Hpy188III	TCNNGA	3 cut(s)	109, 196, 640
Hpy8I	GTNNAC	2 cut(s)	73, 783
HpyAV	CCTTC	6 cut(s)	73, 119, 199, 508, 563, 801
HpyCH4III	ACNGT	1 cut(s)	728
HpyCH4V	TGCA	4 cut(s)	240, 281, 701, 821
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 818, 827
HpyF3I	CTNAG	3 cut(s)	449, 768, 831
Hsp92II	CATG	5 cut(s)	70, 172, 274, 496, 796
HspAI	GCGC	3 cut(s)	80, 165, 614
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	8 cut(s)	24, 146, 265, 280, 297, 307, 678, 798
Lsp1109I	GCAGC	5 cut(s)	17, 427, 811, 814, 833
LweI	GCATC	3 cut(s)	4, 249, 808
MaeI	CTAG	4 cut(s)	47, 77, 464, 557
MaeIII	GTNAC	4 cut(s)	50, 254, 660, 722
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	2 cut(s)	535, 766
MfeI	CAATTG	2 cut(s)	731, 846
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	5 cut(s)	102, 369, 668, 731, 846
MseI	TTAA	3 cut(s)	327, 393, 518
MslI	CAYNNNNRTG	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	824
MspR9I	CCNGG	1 cut(s)	295
MunI	CAATTG	2 cut(s)	731, 846
Mva1269I	GAATGC	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	3 cut(s)	14, 818, 827
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	5 cut(s)	70, 172, 274, 496, 796
NlaIV	GGNNCC	2 cut(s)	131, 582
NmuCI	GTSAC	1 cut(s)	722
PctI	GAATGC	1 cut(s)	602
PfeI	GAWTC	2 cut(s)	775, 842
PkrI	GCNGC	6 cut(s)	7, 442, 580, 823, 826, 829
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	131, 582
PsrI	GAACNNNNNNTAC	2 cut(s)	620, 652
PstNI	CAGNNNCTG	2 cut(s)	11, 827
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	2 cut(s)	74, 269
RsaNI	GTAC	2 cut(s)	73, 268
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	3 cut(s)	327, 393, 518
SatI	GCNGC	6 cut(s)	6, 441, 579, 822, 825, 828
Sau3AI	GATC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	362
SetI	ASST	9 cut(s)	52, 78, 145, 261, 315, 365, 369, 769, 826
SfaNI	GCATC	3 cut(s)	4, 249, 808
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	5 cut(s)	102, 369, 668, 731, 846
SsiI	CCGC	2 cut(s)	388, 578
SspMI	CTAG	4 cut(s)	47, 77, 464, 557
StyD4I	CCNGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	728
TasI	AATT	5 cut(s)	102, 369, 668, 731, 846
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	2 cut(s)	775, 842
Tru1I	TTAA	3 cut(s)	327, 393, 518
Tru9I	TTAA	3 cut(s)	327, 393, 518
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	722
TseI	GCWGC	5 cut(s)	5, 440, 821, 824, 827
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	4 cut(s)	55, 481, 562, 855
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	90
XapI	RAATTY	2 cut(s)	102, 668
XspI	CTAG	4 cut(s)	47, 77, 464, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.