Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

58007440 .. 58008797

Gene Structure 1358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG349800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCAGCCCTTGATCTTCATCTTATGGCCTCTGTTTTTGGCATTCTGGGTACCATCTTCGCCTTCCTTGTCTACCTTGCCCCACTACCAACATTTTATAGGATTTTCAAGACAAAGTCTGTTCAAGGTTTCCAATCTATACCCTATTCAGTGGCATTGTTTAGCGCCATGTTAATGCTCTATTATGGCTTCCTGAAGACAAATGCTTTAATTCTCATCGTGGTCAATTCCATTGGCAGCTTCATCGAAACTGTGTACCTTGTAATGTACTTGATTTATGCACCACCAAAAGTCAGGATTTTCACGGCAAAGCTGCTTGTCCTGTTTAATGTCTTGGCTTATGGTTTGATCTTAGGGGGTACAAGCCAAATCCCAAATGCTAGTCGGCGGTTGACAGTTGTTGGGTATATCAATGTTGCGTTCAATGTCTCTGTGTATGCGGCTCCTCTTAGTATTATGGCACCGAACATCTTAGGGTTCGCCTTTGGGATTGCGCAGATGATTATGTTCTTAGTCTACAAGAAAAAAAAGAAAGTTGCCTTACCAGAATGTAGTCTAAATGATCAGATACCAAACACAGACAGGGTTGCTACTGTAGAAAATGATGACATAGTAACAGCAGGTGAAACTAATACTCAAACTCAATTGGAAGCGGGGATAAAGAAGAGTTCAGAAGCTGATGATCATGAGAATCAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

233

Amino Acids

25.62

Weight (kDa)

8.85

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 97	4.3e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	611
Acc16I	TGCGCA	1 cut(s)	495
Acc36I	ACCTGC	1 cut(s)	611
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	50, 460
AccI	GTMKAC	2 cut(s)	72, 516
AciI	CCGC	3 cut(s)	388, 440, 653
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	4 cut(s)	52, 257, 269, 361
AgsI	TTSAA	3 cut(s)	109, 125, 424
AluBI	AGCT	3 cut(s)	240, 313, 677
AluI	AGCT	3 cut(s)	240, 313, 677
Alw26I	GTCTC	1 cut(s)	433
AlwNI	CAGNNNCTG	1 cut(s)	677
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	3 cut(s)	5, 237, 313
Asp718I	GGTACC	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	167, 496
AsuHPI	GGTGA	1 cut(s)	635
BanI	GGYRCC	2 cut(s)	50, 460
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	17, 249, 300
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	321
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BclI	TGATCA	2 cut(s)	562, 682
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	594
BfoI	RGCGCY	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	611
BisI	GCNGC	4 cut(s)	6, 238, 314, 441
BlsI	GCNGC	4 cut(s)	7, 239, 315, 442
BmiI	GGNNCC	3 cut(s)	52, 444, 462
BpiI	GAAGAC	1 cut(s)	203
BsaBI	GATNNNNATC	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	18
BseJI	GATNNNNATC	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	3 cut(s)	17, 249, 300
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	2 cut(s)	50, 460
BsmAI	GTCTC	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	29
Bsp143I	GATC	4 cut(s)	13, 348, 562, 682
BspACI	CCGC	3 cut(s)	388, 440, 653
BspANI	GGCC	1 cut(s)	29
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	3 cut(s)	52, 444, 462
BspMI	ACCTGC	1 cut(s)	611
BspT107I	GGYRCC	2 cut(s)	50, 460
BssMI	GATC	4 cut(s)	13, 348, 562, 682
Bst4CI	ACNGT	3 cut(s)	253, 397, 595
Bst6I	CTCTTC	1 cut(s)	659
BstDEI	CTNAG	4 cut(s)	352, 449, 472, 511
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	167, 496
BstKTI	GATC	4 cut(s)	16, 351, 565, 685
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	4 cut(s)	13, 348, 562, 682
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	3 cut(s)	17, 249, 300
BstV2I	GAAGAC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	611
CaiI	CAGNNNCTG	1 cut(s)	677
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	2 cut(s)	167, 496
Csp6I	GTAC	4 cut(s)	51, 256, 268, 360
CviAII	CATG	2 cut(s)	169, 686
CviJI	RGCY	9 cut(s)	8, 29, 189, 240, 313, 338, 366, 443, 677
CviKI_1	RGCY	9 cut(s)	8, 29, 189, 240, 313, 338, 366, 443, 677
CviQI	GTAC	4 cut(s)	51, 256, 268, 360
DdeI	CTNAG	4 cut(s)	352, 449, 472, 511
DpnI	GATC	4 cut(s)	15, 350, 564, 684
DpnII	GATC	4 cut(s)	13, 348, 562, 682
Eam1104I	CTCTTC	1 cut(s)	659
EarI	CTCTTC	1 cut(s)	659
Eco57I	CTGAAG	1 cut(s)	215
FaeI	CATG	2 cut(s)	172, 689
FatI	CATG	2 cut(s)	168, 685
FauI	CCCGC	1 cut(s)	646
FbaI	TGATCA	2 cut(s)	562, 682
FblI	GTMKAC	2 cut(s)	72, 516
Fnu4HI	GCNGC	4 cut(s)	6, 238, 314, 441
Fsp4HI	GCNGC	4 cut(s)	6, 238, 314, 441
FspBI	CTAG	1 cut(s)	381
FspI	TGCGCA	1 cut(s)	495
GlaI	GCGC	2 cut(s)	166, 495
GluI	GCNGC	4 cut(s)	6, 238, 314, 441
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	29
HhaI	GCGC	2 cut(s)	167, 496
Hin1II	CATG	2 cut(s)	172, 689
Hin6I	GCGC	2 cut(s)	165, 494
HinP1I	GCGC	2 cut(s)	165, 494
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HinfI	GANTC	1 cut(s)	691
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	4 cut(s)	73, 256, 393, 517
Hpy188I	TCNGA	2 cut(s)	567, 673
Hpy188III	TCNNGA	4 cut(s)	109, 193, 295, 686
Hpy8I	GTNNAC	4 cut(s)	73, 256, 393, 517
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	3 cut(s)	253, 397, 595
HpyCH4V	TGCA	1 cut(s)	281
HpyF3I	CTNAG	4 cut(s)	352, 449, 472, 511
Hsp92II	CATG	2 cut(s)	172, 689
HspAI	GCGC	2 cut(s)	165, 494
KpnI	GGTACC	1 cut(s)	54
Ksp22I	TGATCA	2 cut(s)	562, 682
Kzo9I	GATC	4 cut(s)	13, 348, 562, 682
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	7 cut(s)	32, 206, 280, 335, 558, 568, 606
Lsp1109I	GCAGC	3 cut(s)	17, 249, 300
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	4 cut(s)	15, 350, 564, 684
MboI	GATC	4 cut(s)	13, 348, 562, 682
MboII	GAAGA	4 cut(s)	8, 49, 208, 676
MfeI	CAATTG	1 cut(s)	644
MluCI	AATT	3 cut(s)	210, 226, 644
MnlI	CCTC	2 cut(s)	40, 456
MseI	TTAA	3 cut(s)	173, 209, 327
MslI	CAYNNNNRTG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	644
Mva1269I	GAATGC	1 cut(s)	42
NdeII	GATC	4 cut(s)	13, 348, 562, 682
NlaIII	CATG	2 cut(s)	172, 689
NlaIV	GGNNCC	3 cut(s)	52, 444, 462
NsbI	TGCGCA	1 cut(s)	495
PagI	TCATGA	1 cut(s)	685
PaqCI	CACCTGC	1 cut(s)	611
PctI	GAATGC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	691
PflFI	GACNNNGTC	1 cut(s)	115
PkrI	GCNGC	4 cut(s)	7, 239, 315, 442
PspN4I	GGNNCC	3 cut(s)	52, 444, 462
PstNI	CAGNNNCTG	1 cut(s)	677
PsyI	GACNNNGTC	1 cut(s)	115
RsaI	GTAC	4 cut(s)	52, 257, 269, 361
RsaNI	GTAC	4 cut(s)	51, 256, 268, 360
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	3 cut(s)	173, 209, 327
SatI	GCNGC	4 cut(s)	6, 238, 314, 441
Sau3AI	GATC	4 cut(s)	13, 348, 562, 682
SetI	ASST	7 cut(s)	78, 130, 242, 261, 315, 625, 679
SfcI	CTRYAG	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	173
Sse9I	AATT	3 cut(s)	210, 226, 644
SsiI	CCGC	3 cut(s)	388, 440, 653
SspMI	CTAG	1 cut(s)	381
TaaI	ACNGT	3 cut(s)	253, 397, 595
TaqI	TCGA	1 cut(s)	246
TasI	AATT	3 cut(s)	210, 226, 644
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	1 cut(s)	691
Tru1I	TTAA	3 cut(s)	173, 209, 327
Tru9I	TTAA	3 cut(s)	173, 209, 327
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	3 cut(s)	5, 237, 313
TspDTI	ATGAA	2 cut(s)	8, 232
TspRI	CASTG	1 cut(s)	156
Tth111I	GACNNNGTC	1 cut(s)	115
XmiI	GTMKAC	2 cut(s)	72, 516
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.