Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

54031687 .. 54033151

Gene Structure 1465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G029920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGTAGCCCCAGATCCTCATGCCCTGGCCTCTGTTTTTGGCATGCTAGGTACCCTCGTCTCTTTCCTCGTCTTGCTAGCCCCACTACCGACATTTTATAGGATTTACAAGAGAAAATCAGCAGACGGGTTCCAATCTTTACCATATTCAGTGGCTTTGTTTAGTGCCATGTTAATGCTCTACTATGCTTACATCAAAGAAAATGCTTATTTGCTCCTGGGAATCAATTCCTTTGGCTCCATCATAGAAACTATATACCTTATAGTTTACATGATTTACGCACCATCAAATTCCAGGATTTTCACGGCAAAGCTGCTAGTCCTGTTTAACTTTTTGGCTTATGGGGTGATCGTAGGAGTTACATACCAAATCCCAAATCCTCTTCTGCGGCTTAAAGTCGTTGGCTGGATAAATGTTGTCTTCTCTGTCTGTGTATTTGCTGCCCCTCTAAGTATTCTGAGACTGGTTATTAGAACAAAGAGTGTGGAATACATGTCATTCCCTCTATCGTTCTGCTTAACCATTTGTGCTGTCATGTGGTTCTTCTATGGCCTTTTGATCAAGGATTTATTTGTAGCGGCGCCAAATATCTTAGGGTTTACATTTGGGATGGCTCAGATGATTTTGTTCCTGGTTTACAAGAACACTAAGAGACCCATCTTACCAGAATTCAAACTAAACGAGATGCCAAACAGAGTTGCTGCAGCAAATGATGAAATAATAGTAGCATGCGAAAGTACTACACAAACTAGGCTGAAAACAGGGGAAGGGGAGAATAAGACTAGTTGTGAAGCTGATGGTGATCATGAGAATCAATCACAGACCACTGAGACCAGTACTGTTACTAATGATATTGAGACAAGTCCTGAATCAATTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

293

Amino Acids

32.7

Weight (kDa)

6.73

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 96	6.6e-19	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 217	1.4e-27	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	50, 580
AciI	CCGC	2 cut(s)	388, 578
AclWI	GGATC	1 cut(s)	8
AcsI	RAATTY	2 cut(s)	289, 668
AcyI	GRCGYC	1 cut(s)	581
AfaI	GTAC	3 cut(s)	52, 739, 838
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	1 cut(s)	673
AhlI	ACTAGT	1 cut(s)	782
AjnI	CCWGG	4 cut(s)	24, 216, 293, 630
AluBI	AGCT	2 cut(s)	313, 794
AluI	AGCT	2 cut(s)	313, 794
Alw26I	GTCTC	5 cut(s)	64, 454, 646, 824, 851
AlwI	GGATC	1 cut(s)	8
AoxI	GGCC	2 cut(s)	27, 550
ApeKI	GCWGC	4 cut(s)	313, 440, 701, 704
ApoI	RAATTY	2 cut(s)	289, 668
Asp700I	GAANNNNTTC	1 cut(s)	226
Asp718I	GGTACC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	583
AsuHPI	GGTGA	2 cut(s)	358, 812
AsuNHI	GCTAGC	1 cut(s)	76
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BanI	GGYRCC	2 cut(s)	50, 580
BbsI	GAAGAC	1 cut(s)	412
BbvI	GCAGC	4 cut(s)	300, 427, 688, 716
BccI	CCATC	5 cut(s)	248, 292, 604, 665, 791
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	4 cut(s)	26, 218, 295, 632
BclI	TGATCA	2 cut(s)	558, 802
BcoDI	GTCTC	5 cut(s)	64, 454, 646, 824, 851
BcuI	ACTAGT	1 cut(s)	782
BfaI	CTAG	5 cut(s)	47, 77, 317, 750, 783
BfmI	CTRYAG	1 cut(s)	702
BfoI	RGCGCY	1 cut(s)	584
BisI	GCNGC	6 cut(s)	314, 389, 441, 579, 702, 705
BlsI	GCNGC	6 cut(s)	315, 390, 442, 580, 703, 706
BmcAI	AGTACT	2 cut(s)	739, 838
Bme1390I	CCNGG	4 cut(s)	26, 218, 295, 632
BmiI	GGNNCC	4 cut(s)	52, 131, 238, 582
BmrFI	CCNGG	4 cut(s)	26, 218, 295, 632
BmsI	GCATC	1 cut(s)	675
BmtI	GCTAGC	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	801
BsaHI	GRCGYC	1 cut(s)	581
BsaI	GGTCTC	2 cut(s)	646, 824
BsaJI	CCNNGG	2 cut(s)	24, 217
Bse1I	ACTGG	2 cut(s)	468, 834
Bse8I	GATNNNNATC	1 cut(s)	801
BseBI	CCWGG	4 cut(s)	26, 218, 295, 632
BseDI	CCNNGG	2 cut(s)	24, 217
BseGI	GGATG	1 cut(s)	615
BseJI	GATNNNNATC	1 cut(s)	801
BseMII	CTCAG	3 cut(s)	449, 629, 819
BseNI	ACTGG	2 cut(s)	468, 834
BseXI	GCAGC	4 cut(s)	300, 427, 688, 716
BshFI	GGCC	2 cut(s)	29, 552
BshNI	GGYRCC	2 cut(s)	50, 580
BsmAI	GTCTC	5 cut(s)	64, 454, 646, 824, 851
BsmBI	CGTCTC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	29, 552
Bso31I	GGTCTC	2 cut(s)	646, 824
Bsp143I	GATC	4 cut(s)	13, 348, 558, 802
BspACI	CCGC	2 cut(s)	388, 578
BspANI	GGCC	2 cut(s)	29, 552
BspCNI	CTCAG	3 cut(s)	450, 628, 820
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	4 cut(s)	52, 131, 238, 582
BspMAI	CTGCAG	1 cut(s)	706
BspOI	GCTAGC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	8
BspT107I	GGYRCC	2 cut(s)	50, 580
BspTNI	GGTCTC	2 cut(s)	646, 824
BsrI	ACTGG	2 cut(s)	468, 834
BssECI	CCNNGG	2 cut(s)	24, 217
BssMI	GATC	4 cut(s)	13, 348, 558, 802
BssNI	GRCGYC	1 cut(s)	581
Bst2UI	CCWGG	4 cut(s)	26, 218, 295, 632
Bst4CI	ACNGT	1 cut(s)	841
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	1 cut(s)	581
BstC8I	GCNNGC	3 cut(s)	44, 78, 730
BstDEI	CTNAG	6 cut(s)	449, 458, 592, 615, 648, 828
BstF5I	GGATG	1 cut(s)	615
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	4 cut(s)	16, 351, 561, 805
BstMAI	GTCTC	5 cut(s)	64, 454, 646, 824, 851
BstMBI	GATC	4 cut(s)	13, 348, 558, 802
BstNI	CCWGG	4 cut(s)	26, 218, 295, 632
BstNSI	RCATGY	3 cut(s)	46, 496, 732
BstSCI	CCNGG	4 cut(s)	24, 216, 293, 630
BstSFI	CTRYAG	1 cut(s)	702
BstV1I	GCAGC	4 cut(s)	300, 427, 688, 716
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	29, 552
BtsCI	GGATG	1 cut(s)	615
BtsIMutI	CAGTG	2 cut(s)	156, 825
Cac8I	GCNNGC	3 cut(s)	44, 78, 730
CciI	TCATGA	1 cut(s)	805
CfoI	GCGC	1 cut(s)	583
Csp6I	GTAC	3 cut(s)	51, 738, 837
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	8 cut(s)	20, 43, 169, 271, 493, 535, 729, 806
CviQI	GTAC	3 cut(s)	51, 738, 837
DdeI	CTNAG	6 cut(s)	449, 458, 592, 615, 648, 828
DinI	GGCGCC	1 cut(s)	582
DpnI	GATC	4 cut(s)	15, 350, 560, 804
DpnII	GATC	4 cut(s)	13, 348, 558, 802
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco31I	GGTCTC	2 cut(s)	646, 824
EcoRI	GAATTC	1 cut(s)	668
EcoRII	CCWGG	4 cut(s)	24, 216, 293, 630
EgeI	GGCGCC	1 cut(s)	582
EheI	GGCGCC	1 cut(s)	582
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	8 cut(s)	23, 46, 172, 274, 496, 538, 732, 809
FatI	CATG	8 cut(s)	19, 42, 168, 270, 492, 534, 728, 805
FbaI	TGATCA	2 cut(s)	558, 802
Fnu4HI	GCNGC	6 cut(s)	314, 389, 441, 579, 702, 705
FokI	GGATG	1 cut(s)	622
Fsp4HI	GCNGC	6 cut(s)	314, 389, 441, 579, 702, 705
FspBI	CTAG	5 cut(s)	47, 77, 317, 750, 783
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	6 cut(s)	314, 389, 441, 579, 702, 705
HaeII	RGCGCY	1 cut(s)	584
HaeIII	GGCC	2 cut(s)	29, 552
HhaI	GCGC	1 cut(s)	583
Hin1I	GRCGYC	1 cut(s)	581
Hin1II	CATG	8 cut(s)	23, 46, 172, 274, 496, 538, 732, 809
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HinfI	GANTC	3 cut(s)	222, 811, 869
HphI	GGTGA	2 cut(s)	358, 812
Hpy166II	GTNNAC	3 cut(s)	268, 600, 637
Hpy188I	TCNGA	2 cut(s)	459, 618
Hpy188III	TCNNGA	2 cut(s)	806, 866
Hpy8I	GTNNAC	3 cut(s)	268, 600, 637
HpyAV	CCTTC	1 cut(s)	761
HpyCH4III	ACNGT	1 cut(s)	841
HpyCH4V	TGCA	1 cut(s)	704
HpyF3I	CTNAG	6 cut(s)	449, 458, 592, 615, 648, 828
Hsp92I	GRCGYC	1 cut(s)	581
Hsp92II	CATG	8 cut(s)	23, 46, 172, 274, 496, 538, 732, 809
HspAI	GCGC	1 cut(s)	581
KasI	GGCGCC	1 cut(s)	580
KpnI	GGTACC	1 cut(s)	54
Ksp22I	TGATCA	2 cut(s)	558, 802
Kzo9I	GATC	4 cut(s)	13, 348, 558, 802
LmnI	GCTCC	2 cut(s)	219, 242
Lsp1109I	GCAGC	4 cut(s)	300, 427, 688, 716
LweI	GCATC	1 cut(s)	675
MaeI	CTAG	5 cut(s)	47, 77, 317, 750, 783
MaeIII	GTNAC	2 cut(s)	358, 841
MalI	GATC	4 cut(s)	15, 350, 560, 804
MboI	GATC	4 cut(s)	13, 348, 558, 802
MboII	GAAGA	3 cut(s)	374, 412, 535
MfeI	CAATTG	1 cut(s)	873
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	4 cut(s)	226, 289, 668, 873
Mly113I	GGCGCC	1 cut(s)	581
MnlI	CCTC	7 cut(s)	27, 40, 65, 77, 390, 456, 513
MroXI	GAANNNNTTC	1 cut(s)	226
MseI	TTAA	4 cut(s)	173, 327, 393, 518
MslI	CAYNNNNRTG	1 cut(s)	173
MspR9I	CCNGG	4 cut(s)	26, 218, 295, 632
MunI	CAATTG	1 cut(s)	873
MvaI	CCWGG	4 cut(s)	26, 218, 295, 632
NarI	GGCGCC	1 cut(s)	581
NdeII	GATC	4 cut(s)	13, 348, 558, 802
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	8 cut(s)	23, 46, 172, 274, 496, 538, 732, 809
NlaIV	GGNNCC	4 cut(s)	52, 131, 238, 582
NspI	RCATGY	3 cut(s)	46, 496, 732
PaeI	GCATGC	2 cut(s)	46, 732
PagI	TCATGA	1 cut(s)	805
PciI	ACATGT	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	226
PfeI	GAWTC	3 cut(s)	222, 811, 869
PfoI	TCCNGGA	1 cut(s)	293
PkrI	GCNGC	6 cut(s)	315, 390, 442, 580, 703, 706
PluTI	GGCGCC	1 cut(s)	584
PscI	ACATGT	1 cut(s)	492
Psp6I	CCWGG	4 cut(s)	24, 216, 293, 630
PspGI	CCWGG	4 cut(s)	24, 216, 293, 630
PspN4I	GGNNCC	4 cut(s)	52, 131, 238, 582
PstI	CTGCAG	1 cut(s)	706
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	3 cut(s)	52, 739, 838
RsaNI	GTAC	3 cut(s)	51, 738, 837
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	4 cut(s)	173, 327, 393, 518
SatI	GCNGC	6 cut(s)	314, 389, 441, 579, 702, 705
Sau3AI	GATC	4 cut(s)	13, 348, 558, 802
ScaI	AGTACT	2 cut(s)	739, 838
ScrFI	CCNGG	4 cut(s)	26, 218, 295, 632
SetI	ASST	4 cut(s)	52, 261, 315, 796
SfaNI	GCATC	1 cut(s)	675
SfcI	CTRYAG	1 cut(s)	702
SfoI	GGCGCC	1 cut(s)	582
SmiMI	CAYNNNNRTG	1 cut(s)	173
SpeI	ACTAGT	1 cut(s)	782
SphI	GCATGC	2 cut(s)	46, 732
Sse9I	AATT	4 cut(s)	226, 289, 668, 873
SsiI	CCGC	2 cut(s)	388, 578
SspDI	GGCGCC	1 cut(s)	580
SspMI	CTAG	5 cut(s)	47, 77, 317, 750, 783
StyD4I	CCNGG	4 cut(s)	24, 216, 293, 630
TaaI	ACNGT	1 cut(s)	841
TasI	AATT	4 cut(s)	226, 289, 668, 873
TatI	WGTACW	2 cut(s)	737, 836
TauI	GCSGC	2 cut(s)	391, 581
TfiI	GAWTC	3 cut(s)	222, 811, 869
Tru1I	TTAA	4 cut(s)	173, 327, 393, 518
Tru9I	TTAA	4 cut(s)	173, 327, 393, 518
TscAI	CASTG	2 cut(s)	156, 832
TseI	GCWGC	4 cut(s)	313, 440, 701, 704
TspDTI	ATGAA	1 cut(s)	729
TspRI	CASTG	2 cut(s)	156, 832
XapI	RAATTY	2 cut(s)	289, 668
XceI	RCATGY	3 cut(s)	46, 496, 732
XmnI	GAANNNNTTC	1 cut(s)	226
XspI	CTAG	5 cut(s)	47, 77, 317, 750, 783
ZrmI	AGTACT	2 cut(s)	739, 838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.