Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

20231323 .. 20233456

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGAGCCCTTGATCTTGATCTTATCGCCTCCGCACCAAACGTGTTAGGGTTTGCGTTCGGGATTGTTCAGATGATTATGATCCTCGTCTACAGGAAGAAAATGACCAAGATAGATTTCTTACCGGAACAGAGTCTAAGTGATCAGATGCCAATCACAACTAGGGTTCCTGCTCCAGCAAATGATAACATGACACTAGCAATTGTCATTAGTACTACAACGAAAGCTGGAGACGATGAAACTGATGATGATGTCGACGACGATGATTATGATCTTGAGAATCAGTTGGACGGTCTGCCCAAAGGCAAGGCAATCGTGGCCGCTGCCTTCGGCCTCATCTTGAGAAGGGCCTCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

120

Amino Acids

12.87

Weight (kDa)

4.18

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	90, 255
AciI	CCGC	2 cut(s)	33, 321
AclWI	GGATC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	318
AfaI	GTAC	1 cut(s)	214
AflIII	ACRYGT	1 cut(s)	42
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	3 cut(s)	318, 331, 348
ApeKI	GCWGC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	310
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	2 cut(s)	162, 197
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	2 cut(s)	321, 324
BlsI	GCNGC	2 cut(s)	322, 325
BmcAI	AGTACT	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	2 cut(s)	7, 168
BmsI	GCATC	1 cut(s)	138
BpmI	CTGGAG	2 cut(s)	159, 249
BpuEI	CTTGAG	1 cut(s)	296
BsaBI	GATNNNNATC	4 cut(s)	18, 80, 152, 270
BsaWI	WCCGGW	1 cut(s)	124
Bse8I	GATNNNNATC	4 cut(s)	18, 80, 152, 270
BseJI	GATNNNNATC	4 cut(s)	18, 80, 152, 270
BseXI	GCAGC	1 cut(s)	310
BshFI	GGCC	3 cut(s)	320, 333, 350
BsiSI	CCGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	225
BsmBI	CGTCTC	1 cut(s)	225
BsnI	GGCC	3 cut(s)	320, 333, 350
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	5 cut(s)	13, 19, 81, 142, 271
BspACI	CCGC	2 cut(s)	33, 321
BspANI	GGCC	3 cut(s)	320, 333, 350
BspLI	GGNNCC	2 cut(s)	7, 168
BspPI	GGATC	1 cut(s)	76
BssMI	GATC	5 cut(s)	13, 19, 81, 142, 271
Bst4CI	ACNGT	1 cut(s)	293
BstDEI	CTNAG	1 cut(s)	137
BstKTI	GATC	5 cut(s)	16, 22, 84, 145, 274
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	5 cut(s)	13, 19, 81, 142, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstSFI	CTRYAG	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	310
BsuRI	GGCC	3 cut(s)	320, 333, 350
Cfr13I	GGNCC	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	5 cut(s)	8, 227, 320, 333, 350
CviKI_1	RGCY	5 cut(s)	8, 227, 320, 333, 350
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	5 cut(s)	15, 21, 83, 144, 273
DpnII	GATC	5 cut(s)	13, 19, 81, 142, 271
EaeI	YGGCCR	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	10
Esp3I	CGTCTC	1 cut(s)	225
FaeI	CATG	1 cut(s)	193
FaiI	YATR	4 cut(s)	80, 191, 270, 358
FatI	CATG	1 cut(s)	189
FbaI	TGATCA	1 cut(s)	142
FblI	GTMKAC	2 cut(s)	90, 255
Fnu4HI	GCNGC	2 cut(s)	321, 324
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	2 cut(s)	321, 324
FspBI	CTAG	2 cut(s)	162, 197
GluI	GCNGC	2 cut(s)	321, 324
GsuI	CTGGAG	2 cut(s)	159, 249
HaeIII	GGCC	3 cut(s)	320, 333, 350
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	2 cut(s)	133, 280
HpaII	CCGG	1 cut(s)	125
Hpy166II	GTNNAC	2 cut(s)	91, 256
Hpy188I	TCNGA	2 cut(s)	72, 147
Hpy188III	TCNNGA	4 cut(s)	17, 61, 275, 340
Hpy8I	GTNNAC	2 cut(s)	91, 256
Hpy99I	CGWCG	2 cut(s)	260, 263
HpyAV	CCTTC	2 cut(s)	337, 339
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	5 cut(s)	13, 19, 81, 142, 271
LmnI	GCTCC	2 cut(s)	5, 178
LpnPI	CCDG	5 cut(s)	79, 138, 183, 189, 213
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	2 cut(s)	162, 197
MaeII	ACGT	1 cut(s)	42
MalI	GATC	5 cut(s)	15, 21, 83, 144, 273
MboI	GATC	5 cut(s)	13, 19, 81, 142, 271
MboII	GAAGA	1 cut(s)	109
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	3 cut(s)	40, 95, 344
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	1 cut(s)	125
MunI	CAATTG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	5 cut(s)	13, 19, 81, 142, 271
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	2 cut(s)	7, 168
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	322, 325
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	7, 168
PspPI	GGNCC	1 cut(s)	348
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
SalI	GTCGAC	1 cut(s)	254
SatI	GCNGC	2 cut(s)	321, 324
Sau3AI	GATC	5 cut(s)	13, 19, 81, 142, 271
Sau96I	GGNCC	1 cut(s)	348
ScaI	AGTACT	1 cut(s)	214
SchI	GAGTC	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	2 cut(s)	45, 229
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	91
SmlI	CTYRAG	2 cut(s)	275, 340
SmoI	CTYRAG	2 cut(s)	275, 340
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	2 cut(s)	33, 321
SspMI	CTAG	2 cut(s)	162, 197
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	255
TasI	AATT	1 cut(s)	201
TatI	WGTACW	1 cut(s)	212
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	252
XmiI	GTMKAC	2 cut(s)	90, 255
XspI	CTAG	2 cut(s)	162, 197
ZrmI	AGTACT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.