Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Forward (+)

36854246 .. 36856582

Gene Structure 2337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0229500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGTCTACCCCAATGGGCCATTAACGGTAATAAGACTCAACGACGTCGTAGCTGGGCACGCCACTTGAGCAAGCAAACAGAAACTGAGCCCGAGCCTGAGCCGGAGAAGATGATCGTCTGCGTCGCCGTCGTCGGGCATCAGAACAACCCTCTTTACATCCAGAGCTTCACTGATGCCGATGACGCCCTCAAGCTCCACCACATCGTCCACTGCTCCCTCGACGTCGTCGACGAGCGAGTGAACAATCCGAAGAAGTCCGGACCGACACTGAATGAGACATTCTTGGGTCTGCTTTATCCAACCGAAAATTACAAAGTGTATGGCTATTTGACAAACACGAAGGTGAAGTTTATCTTGGTGACTACTGATCTCGATGTTAAAGATGCAGATGTCAGAAATTTTTTCAGGCGATTCCATGCTGGGTATGTGGATGCAATTTCAAACCCATTCCATGAGCCAGGGAAAAAGATAACCTCAAAAACCTTTGCTGAAAAGGTGAGCACCATTGTCAAGTCATTCGGGTTCAGTTCAACTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

180

Amino Acids

20.4

Weight (kDa)

8.8

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sedlin_N	PF04628	44 - 172	2.3e-37	Sedlin, N-terminal conserved region
Sybindin	PF04099	58 - 173	5.1e-08	Sybindin-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	49, 228
AccI	GTMKAC	2 cut(s)	7, 231
AccIII	TCCGGA	1 cut(s)	260
AcsI	RAATTY	1 cut(s)	400
AcyI	GRCGYC	3 cut(s)	46, 186, 225
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	444, 534
AjnI	CCWGG	1 cut(s)	460
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AleI	CACNNNNGTG	1 cut(s)	344
AluBI	AGCT	3 cut(s)	54, 168, 196
AluI	AGCT	3 cut(s)	54, 168, 196
Alw21I	GWGCWC	1 cut(s)	506
Alw26I	GTCTC	1 cut(s)	272
AlwNI	CAGNNNCTG	1 cut(s)	86
Ama87I	CYCGRG	1 cut(s)	92
Aor13HI	TCCGGA	1 cut(s)	260
AoxI	GGCC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	400
AspS9I	GGNCC	2 cut(s)	18, 263
AsuHPI	GGTGA	3 cut(s)	358, 373, 511
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	506
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	462
Bme18I	GGWCC	1 cut(s)	263
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	2 cut(s)	18, 263
BmrFI	CCNGG	1 cut(s)	462
BmsI	GCATC	4 cut(s)	148, 166, 376, 424
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	2 cut(s)	88, 176
BsaHI	GRCGYC	3 cut(s)	46, 186, 225
BsaJI	CCNNGG	1 cut(s)	461
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	541
BseAI	TCCGGA	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	461
BseGI	GGATG	2 cut(s)	159, 439
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	78, 90
BseNI	ACTGG	1 cut(s)	541
BseSI	GKGCMC	1 cut(s)	61
BseYI	CCCAGC	2 cut(s)	54, 422
BshFI	GGCC	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	506
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	104, 261
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	20
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	3 cut(s)	61, 93, 506
Bsp13I	TCCGGA	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	114, 370
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	2 cut(s)	79, 91
BspEI	TCCGGA	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	541
BssECI	CCNNGG	1 cut(s)	461
BssMI	GATC	2 cut(s)	114, 370
BssNI	GRCGYC	3 cut(s)	46, 186, 225
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	29
BstACI	GRCGYC	3 cut(s)	46, 186, 225
BstC8I	GCNNGC	2 cut(s)	61, 74
BstDEI	CTNAG	2 cut(s)	87, 99
BstF5I	GGATG	2 cut(s)	159, 439
BstKTI	GATC	2 cut(s)	117, 373
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	2 cut(s)	114, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 69, 185
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	460
BstSLI	GKGCMC	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	159, 439
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	3 cut(s)	171, 211, 269
Cac8I	GCNNGC	2 cut(s)	61, 74
CaiI	CAGNNNCTG	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	18, 263
CpoI	CGGWCCG	1 cut(s)	263
CseI	GACGC	2 cut(s)	112, 194
CspI	CGGWCCG	1 cut(s)	263
CviAII	CATG	2 cut(s)	419, 455
CviJI	RGCY	9 cut(s)	20, 54, 91, 97, 103, 168, 196, 327, 460
CviKI_1	RGCY	9 cut(s)	20, 54, 91, 97, 103, 168, 196, 327, 460
DdeI	CTNAG	2 cut(s)	87, 99
DpnI	GATC	2 cut(s)	116, 372
DpnII	GATC	2 cut(s)	114, 370
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	263
Eco88I	CYCGRG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	2 cut(s)	422, 458
FaiI	YATR	4 cut(s)	324, 420, 429, 456
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	2 cut(s)	418, 454
FblI	GTMKAC	2 cut(s)	7, 231
FokI	GGATG	2 cut(s)	146, 446
FriOI	GRGCYC	1 cut(s)	93
GsaI	CCCAGC	2 cut(s)	58, 426
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	2 cut(s)	104, 261
HgaI	GACGC	2 cut(s)	112, 194
Hin1I	GRCGYC	3 cut(s)	46, 186, 225
Hin1II	CATG	2 cut(s)	422, 458
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	2 cut(s)	37, 414
HpaII	CCGG	2 cut(s)	104, 261
HphI	GGTGA	3 cut(s)	358, 373, 511
Hpy166II	GTNNAC	4 cut(s)	8, 211, 232, 244
Hpy188I	TCNGA	3 cut(s)	144, 252, 398
Hpy188III	TCNNGA	3 cut(s)	163, 261, 374
Hpy8I	GTNNAC	4 cut(s)	8, 211, 232, 244
Hpy99I	CGWCG	9 cut(s)	48, 51, 128, 134, 137, 227, 230, 233, 236
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	2 cut(s)	46, 225
HpyCH4V	TGCA	2 cut(s)	389, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 69, 185
HpyF3I	CTNAG	2 cut(s)	87, 99
HpySE526I	ACGT	2 cut(s)	46, 225
Hsp92I	GRCGYC	3 cut(s)	46, 186, 225
Hsp92II	CATG	2 cut(s)	422, 458
Kpn2I	TCCGGA	1 cut(s)	260
Kzo9I	GATC	2 cut(s)	114, 370
LmnI	GCTCC	2 cut(s)	201, 221
LweI	GCATC	4 cut(s)	148, 166, 376, 424
MaeII	ACGT	2 cut(s)	46, 225
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	2 cut(s)	116, 372
MboI	GATC	2 cut(s)	114, 370
MboII	GAAGA	2 cut(s)	121, 265
MhlI	GDGCHC	3 cut(s)	61, 93, 506
MluCI	AATT	3 cut(s)	310, 400, 438
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	4 cut(s)	162, 200, 230, 487
MroI	TCCGGA	1 cut(s)	260
MseI	TTAA	2 cut(s)	24, 381
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	2 cut(s)	104, 261
MspR9I	CCNGG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	60, 69, 185
NdeII	GATC	2 cut(s)	114, 370
NlaIII	CATG	2 cut(s)	422, 458
NmuCI	GTSAC	1 cut(s)	361
OliI	CACNNNNGTG	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 231
PfeI	GAWTC	1 cut(s)	414
PflFI	GACNNNGTC	1 cut(s)	227
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	460
PspFI	CCCAGC	2 cut(s)	54, 422
PspGI	CCWGG	1 cut(s)	460
PspPI	GGNCC	2 cut(s)	18, 263
PstNI	CAGNNNCTG	1 cut(s)	86
PsyI	GACNNNGTC	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	344
Rsr2I	CGGWCCG	1 cut(s)	263
RsrII	CGGWCCG	1 cut(s)	263
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	24, 381
Sau3AI	GATC	2 cut(s)	114, 370
Sau96I	GGNCC	2 cut(s)	18, 263
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	462
SduI	GDGCHC	3 cut(s)	61, 93, 506
SetI	ASST	9 cut(s)	49, 56, 170, 198, 228, 348, 479, 488, 501
SfaNI	GCATC	4 cut(s)	148, 166, 376, 424
SgrDI	CGTCGACG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	2 cut(s)	67, 191
SmoI	CTYRAG	2 cut(s)	67, 191
Sse9I	AATT	3 cut(s)	310, 400, 438
StyD4I	CCNGG	1 cut(s)	460
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	2 cut(s)	49, 228
TaqI	TCGA	3 cut(s)	222, 231, 375
TaqII	GACCGA	1 cut(s)	280
TasI	AATT	3 cut(s)	310, 400, 438
TfiI	GAWTC	1 cut(s)	414
Tru1I	TTAA	2 cut(s)	24, 381
Tru9I	TTAA	2 cut(s)	24, 381
TscAI	CASTG	3 cut(s)	178, 218, 276
TseFI	GTSAC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	361
TspRI	CASTG	3 cut(s)	178, 218, 276
Tth111I	GACNNNGTC	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	400
XmiI	GTMKAC	2 cut(s)	7, 231
ZraI	GACGTC	2 cut(s)	47, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.