Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Forward (+)

58078737 .. 58080539

Gene Structure 1803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG350200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTAACGCTCTACTATGGCTTCCTCAAGACAAATGGTTTGATTCTCATCGTGATCAATTCCATTGGCTGCTTCATCGAAACTGTGTACCTTGTAATCTACATGATTTATGCACCACCAAAAGCCAGGATTTTCACAGCAAAGCTACTTGTTCTGTTTAATGTCTTGACTTATGGTTTGATCTTATTGGGTACAAGCCAAATCCCAAATGTTCTTCTGCGGTTGAAAGTTGTTGGATGGATTAATGTTGTGTTCAATGTCTCGGTGTTTGCTGCTCCTCTTAGTATTATGGCACCAAACATCCTAGGGTTCGCCTTTGGGATTGGGCAGATGATTATGTTCTTGGTCTGTAAGAACACCAAGAAAGCTGTCTTACCAGAATATAGTCTAAATGATAAGATACCAAGCACAAACAGGGTTGCTTCTGTAGAAAACAATGACATAGTAAGTAACAGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

153

Amino Acids

16.95

Weight (kDa)

9.61

Isoelectric Point (pI)

27.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	4 - 41	1.7e-08	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	447
Acc36I	ACCTGC	1 cut(s)	447
AccB1I	GGYRCC	1 cut(s)	292
AciI	CCGC	1 cut(s)	220
AfaI	GTAC	2 cut(s)	89, 193
AgsI	TTSAA	2 cut(s)	226, 256
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	145, 368
AluI	AGCT	2 cut(s)	145, 368
Alw26I	GTCTC	1 cut(s)	265
ApeKI	GCWGC	2 cut(s)	69, 272
ArsI	GACNNNNNNTTYG	4 cut(s)	22, 54, 160, 192
AseI	ATTAAT	1 cut(s)	243
AspA2I	CCTAGG	1 cut(s)	304
AvrII	CCTAGG	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	292
BbvI	GCAGC	2 cut(s)	56, 259
BccI	CCATC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	127
BclI	TGATCA	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	1 cut(s)	426
BfuAI	ACCTGC	1 cut(s)	447
BisI	GCNGC	2 cut(s)	70, 273
BlnI	CCTAGG	1 cut(s)	304
BlsI	GCNGC	2 cut(s)	71, 274
Bme1390I	CCNGG	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	127
BpuEI	CTTGAG	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	304
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	2 cut(s)	242, 300
BseJI	GATNNNNATC	1 cut(s)	47
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	56, 259
BshNI	GGYRCC	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	54, 180
BspACI	CCGC	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	294
BspMI	ACCTGC	1 cut(s)	447
BspT107I	GGYRCC	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	2 cut(s)	54, 180
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	242, 300
BstKTI	GATC	2 cut(s)	57, 183
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	2 cut(s)	54, 180
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	2 cut(s)	56, 259
BtsCI	GGATG	2 cut(s)	242, 300
BveI	ACCTGC	1 cut(s)	447
Csp6I	GTAC	2 cut(s)	88, 192
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	6 cut(s)	21, 69, 125, 145, 198, 368
CviKI_1	RGCY	6 cut(s)	21, 69, 125, 145, 198, 368
CviQI	GTAC	2 cut(s)	88, 192
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	2 cut(s)	56, 182
DpnII	GATC	2 cut(s)	54, 180
Eco130I	CCWWGG	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	1 cut(s)	106
FaiI	YATR	8 cut(s)	18, 104, 111, 174, 290, 338, 384, 443
FatI	CATG	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	70, 273
FokI	GGATG	2 cut(s)	249, 287
Fsp4HI	GCNGC	2 cut(s)	70, 273
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	2 cut(s)	70, 273
Hin1II	CATG	1 cut(s)	106
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	43
HpaI	GTTAAC	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	6, 88
Hpy188III	TCNNGA	3 cut(s)	28, 52, 166
Hpy8I	GTNNAC	2 cut(s)	6, 88
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	281
Hsp92II	CATG	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	54
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	54, 180
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	5 cut(s)	112, 139, 390, 400, 442
Lsp1109I	GCAGC	2 cut(s)	56, 259
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	2 cut(s)	56, 182
MboI	GATC	2 cut(s)	54, 180
MboII	GAAGA	1 cut(s)	206
MluCI	AATT	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	2 cut(s)	35, 288
MseI	TTAA	3 cut(s)	5, 159, 243
MspR9I	CCNGG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	127
NdeII	GATC	2 cut(s)	54, 180
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	294
PaqCI	CACCTGC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	71, 274
PshBI	ATTAAT	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	294
RsaI	GTAC	2 cut(s)	89, 193
RsaNI	GTAC	2 cut(s)	88, 192
SaqAI	TTAA	3 cut(s)	5, 159, 243
SatI	GCNGC	2 cut(s)	70, 273
Sau3AI	GATC	2 cut(s)	54, 180
ScrFI	CCNGG	1 cut(s)	127
SetI	ASST	4 cut(s)	93, 147, 370, 461
SfcI	CTRYAG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	58
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	3 cut(s)	5, 159, 243
Tru9I	TTAA	3 cut(s)	5, 159, 243
TseI	GCWGC	2 cut(s)	69, 272
TspDTI	ATGAA	1 cut(s)	64
VspI	ATTAAT	1 cut(s)	243
XmaJI	CCTAGG	1 cut(s)	304
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.