Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

54008471 .. 54009430

Gene Structure 960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G029890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCAGCCCTTGATCTTCATCTTATGGCCTCTGTGTTTGGCATTCTGGGAACCATCGTCGCCTTCCTCGTCTACCTTGCCCCACTACCAAAATTTTATAGGATTTTCAAGACAAAATCAACACAAGGTTTCCAAGCTATACCCTATTCGGTGGCATTGTTTAGCGCCATGTTAACGCTCTACTATGGCTTCCTCAAGACAAATGGTTTGTTTCTCATCGCGATCAATTCCATTGGCTGCTTCATCGAAACTGTGTACCTTGTAATGTACATGATTTATGCACCACCAAAAGCCAGGATTTTCACAGCAAAGCTACTTGTTCTGTTTAATGTCTTGACTTATGGTTTGATCTTATTGGGTACAAGCCAAATCCCAAATGTTCTTCTGCGGTTGAAAGTTGTTGGATGGATTAATGTTGTGTTCAATGTCTCTGTGTTTGCTGCTCCTCTTAGTATTATGGTAATTCCATTCATGCTTTACGTCTTAATTATTATCCCTTTTTGGTTGATCCATACTAAATACTTGATTATTAATTCCATTGACTTGTTTTTTCAGAGGCTGGTTATTAAAACAAAGAGTGTGGAATACATGTCATTCCCTTTGTCGTTCTGCTTAACTCTTTATGCTGTTATGTGGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

213

Amino Acids

24.21

Weight (kDa)

9.6

Isoelectric Point (pI)

28.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 97	7.1e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	1 cut(s)	221
AciI	CCGC	1 cut(s)	388
AclWI	GGATC	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	92
AfaI	GTAC	3 cut(s)	257, 269, 361
AflIII	ACRYGT	1 cut(s)	588
AgsI	TTSAA	3 cut(s)	109, 394, 424
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	2 cut(s)	137, 313
AluI	AGCT	2 cut(s)	137, 313
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	1 cut(s)	502
AlwNI	CAGNNNCTG	1 cut(s)	559
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	3 cut(s)	5, 237, 440
ApoI	RAATTY	1 cut(s)	92
ArsI	GACNNNNNNTTYG	4 cut(s)	190, 222, 328, 360
AseI	ATTAAT	2 cut(s)	411, 531
AspLEI	GCGC	1 cut(s)	167
BbvI	GCAGC	3 cut(s)	17, 224, 427
BccI	CCATC	2 cut(s)	62, 399
BciT130I	CCWGG	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	433
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	3 cut(s)	6, 238, 441
BlsI	GCNGC	3 cut(s)	7, 239, 442
Bme1390I	CCNGG	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	410
BseJI	GATNNNNATC	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	3 cut(s)	17, 224, 427
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	29
Bsp1407I	TGTACA	1 cut(s)	267
Bsp143I	GATC	4 cut(s)	13, 222, 348, 507
Bsp68I	TCGCGA	1 cut(s)	221
BspACI	CCGC	1 cut(s)	388
BspANI	GGCC	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	52
BspPI	GGATC	1 cut(s)	502
BsrGI	TGTACA	1 cut(s)	267
BssMI	GATC	4 cut(s)	13, 222, 348, 507
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	253
BstAUI	TGTACA	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	449
BstF5I	GGATG	1 cut(s)	410
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	4 cut(s)	16, 225, 351, 510
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	4 cut(s)	13, 222, 348, 507
BstNI	CCWGG	1 cut(s)	295
BstNSI	RCATGY	1 cut(s)	592
BstSCI	CCNGG	1 cut(s)	293
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	3 cut(s)	17, 224, 427
BsuRI	GGCC	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	410
BtuMI	TCGCGA	1 cut(s)	221
CaiI	CAGNNNCTG	1 cut(s)	559
CfoI	GCGC	1 cut(s)	167
Csp6I	GTAC	3 cut(s)	256, 268, 360
CspCI	CAANNNNNGTGG	2 cut(s)	561, 596
CviAII	CATG	4 cut(s)	169, 271, 472, 589
CviJI	RGCY	9 cut(s)	8, 29, 137, 189, 237, 293, 313, 366, 559
CviKI_1	RGCY	9 cut(s)	8, 29, 137, 189, 237, 293, 313, 366, 559
CviQI	GTAC	3 cut(s)	256, 268, 360
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	4 cut(s)	15, 224, 350, 509
DpnII	GATC	4 cut(s)	13, 222, 348, 507
EcoRII	CCWGG	1 cut(s)	293
FaeI	CATG	4 cut(s)	172, 274, 475, 592
FatI	CATG	4 cut(s)	168, 270, 471, 588
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	6, 238, 441
FokI	GGATG	1 cut(s)	417
Fsp4HI	GCNGC	3 cut(s)	6, 238, 441
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	3 cut(s)	6, 238, 441
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	4 cut(s)	172, 274, 475, 592
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HpaI	GTTAAC	1 cut(s)	174
Hpy166II	GTNNAC	3 cut(s)	73, 174, 256
Hpy188I	TCNGA	1 cut(s)	555
Hpy188III	TCNNGA	4 cut(s)	109, 196, 220, 334
Hpy8I	GTNNAC	3 cut(s)	73, 174, 256
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	449
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	4 cut(s)	172, 274, 475, 592
HspAI	GCGC	1 cut(s)	165
KspAI	GTTAAC	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	13, 222, 348, 507
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	4 cut(s)	32, 280, 307, 545
Lsp1109I	GCAGC	3 cut(s)	17, 224, 427
MaeII	ACGT	1 cut(s)	480
MalI	GATC	4 cut(s)	15, 224, 350, 509
MboI	GATC	4 cut(s)	13, 222, 348, 507
MboII	GAAGA	2 cut(s)	8, 374
MluCI	AATT	5 cut(s)	92, 226, 462, 486, 532
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	5 cut(s)	40, 77, 203, 456, 549
MseI	TTAA	7 cut(s)	173, 327, 411, 485, 531, 567, 614
MspR9I	CCNGG	1 cut(s)	295
Mva1269I	GAATGC	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	295
MvnI	CGCG	1 cut(s)	221
NdeII	GATC	4 cut(s)	13, 222, 348, 507
NlaIII	CATG	4 cut(s)	172, 274, 475, 592
NlaIV	GGNNCC	1 cut(s)	52
NruI	TCGCGA	1 cut(s)	221
NspI	RCATGY	1 cut(s)	592
PciI	ACATGT	1 cut(s)	588
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	1 cut(s)	42
PkrI	GCNGC	3 cut(s)	7, 239, 442
PscI	ACATGT	1 cut(s)	588
PshBI	ATTAAT	2 cut(s)	411, 531
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	559
RruI	TCGCGA	1 cut(s)	221
RsaI	GTAC	3 cut(s)	257, 269, 361
RsaNI	GTAC	3 cut(s)	256, 268, 360
SaqAI	TTAA	7 cut(s)	173, 327, 411, 485, 531, 567, 614
SatI	GCNGC	3 cut(s)	6, 238, 441
Sau3AI	GATC	4 cut(s)	13, 222, 348, 507
ScrFI	CCNGG	1 cut(s)	295
SetI	ASST	6 cut(s)	78, 130, 139, 261, 315, 483
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	5 cut(s)	92, 226, 462, 486, 532
SsiI	CCGC	1 cut(s)	388
StyD4I	CCNGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	1 cut(s)	246
TasI	AATT	5 cut(s)	92, 226, 462, 486, 532
TatI	WGTACW	1 cut(s)	267
Tru1I	TTAA	7 cut(s)	173, 327, 411, 485, 531, 567, 614
Tru9I	TTAA	7 cut(s)	173, 327, 411, 485, 531, 567, 614
TseI	GCWGC	3 cut(s)	5, 237, 440
TspDTI	ATGAA	3 cut(s)	8, 232, 460
VspI	ATTAAT	2 cut(s)	411, 531
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	592
XmiI	GTMKAC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.