Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002860

Physical Location & Seq

Genomic Coordinates Forward (+)

24107664 .. 24110132

Gene Structure 2469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGACGGATCCCTATCATAGATACGGCTCTCCGCCGGAACGAGGGAGTGTAGCAAAGTCCAATTTTCCTGGTTACTTAACATCCGAGCCGCCATCGTTGCTATCGAATCACAGTTTTACCCCGACTGATTTGCGGAGCTATTCTTCGGATTTTCTGCAGAGAGATAAATCATTGGGGTTAGTGCCGTATGGTGTAGATGATAGTGTGGGCGGTAGAGTTCGGCCTGATACGGGTGTTGGTGTGACAGCAGAGTCTAGTTTATATGATCCTTTGGAAGATAGTTACCGAAGCCAGAGACAGGGTGTTGCTGTGAGATCAATGGTCCCGGGGGTTTATGGTGTAGATGCTGTGAGTGTCAGCGTTCATGCTGAACCTGGTCTTGCTGTAACAGCAGGGGCTGGTTATCCATCTCCTTTAGGAGCTCAAAGTTTACTGAGCCAAAGACACGAGGTTGGAGTGGGCATTGGTCCAAGTGTTTCCACGGACATTAGTAGAGAAAGGTCTGTGCCTTCGAGGAGTGGAGATGGTCTCCCAGTACTAAAAGGGGAATCAAACATTTTGTTTGTGGATGGACTTCCCACTGACTGTACCAGAAGAGAAGTAGGCCATCTATTTCGTCCATTCATTGGCTACAGAGAAATCAGAGTAGTTCACAAGGAGCCTAGACGTGTAAGTCCACTCATCTGCCTAGTTTTATGTAGTAATCTTTATAGAAAACCTTTATGTTTAACACTGAGCGTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

249

Amino Acids

26.76

Weight (kDa)

7.73

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31470 FvH4_2g31470
malus_domestica	MD08G1066100.v1.1 MD15G1055100.v1.1
prunus_persica	Prupe.1G408300_v2.0.a1
pyrus_communis	pycom08g05480 pycom15g05200
rosa_chinensis	RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331
rosa_laevigata	RLG00000010416
rosa_multiflora	Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750
rosa_rugosa	Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1
rosa_samantha	Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800
rosa_wichuraiana	Rw3G022150 Rw5G025820 Rw6G043740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	250, 672
AccB7I	CCANNNNNTGG	1 cut(s)	626
AciI	CCGC	4 cut(s)	32, 89, 133, 210
AclWI	GGATC	3 cut(s)	2, 15, 260
AfaI	GTAC	2 cut(s)	537, 589
AfiI	CCNNNNNNNGG	4 cut(s)	41, 230, 298, 626
AflIII	ACRYGT	1 cut(s)	667
AjiI	CACGTC	1 cut(s)	668
AjnI	CCWGG	2 cut(s)	67, 373
AluBI	AGCT	2 cut(s)	138, 422
AluI	AGCT	2 cut(s)	138, 422
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	2 cut(s)	289, 533
AlwI	GGATC	3 cut(s)	2, 15, 260
AlwNI	CAGNNNCTG	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	325
AoxI	GGCC	2 cut(s)	221, 604
AspS9I	GGNCC	2 cut(s)	322, 467
AsuC2I	CCSGG	2 cut(s)	326, 327
AvaI	CYCGRG	1 cut(s)	325
AvaII	GGWCC	2 cut(s)	322, 467
BaeI	ACNNNNGTAYC	2 cut(s)	219, 252
BamHI	GGATCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	424
BauI	CACGAG	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	424
BccI	CCATC	5 cut(s)	100, 415, 518, 563, 615
BceAI	ACGGC	2 cut(s)	40, 169
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	2 cut(s)	69, 375
BcnI	CCSGG	2 cut(s)	326, 327
BcoDI	GTCTC	2 cut(s)	289, 533
BfaI	CTAG	3 cut(s)	255, 663, 689
BfmI	CTRYAG	2 cut(s)	155, 631
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
BmcAI	AGTACT	1 cut(s)	537
Bme1390I	CCNGG	4 cut(s)	69, 326, 327, 375
Bme18I	GGWCC	2 cut(s)	322, 467
BmeT110I	CYCGRG	1 cut(s)	325
BmgBI	CACGTC	1 cut(s)	668
BmgT120I	GGNCC	2 cut(s)	322, 467
BmiI	GGNNCC	3 cut(s)	9, 324, 660
BmrFI	CCNGG	4 cut(s)	69, 326, 327, 375
BmrI	ACTGGG	1 cut(s)	527
BmsI	GCATC	1 cut(s)	334
BmuI	ACTGGG	1 cut(s)	527
BplI	GAGNNNNNCTC	2 cut(s)	513, 545
BpuMI	CCSGG	2 cut(s)	326, 327
BsaBI	GATNNNNATC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	3 cut(s)	325, 326, 480
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 230, 298, 626
Bse1I	ACTGG	1 cut(s)	533
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	69, 375
BseDI	CCNNGG	3 cut(s)	325, 326, 480
BseGI	GGATG	2 cut(s)	80, 574
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	4 cut(s)	41, 230, 298, 626
BseMII	CTCAG	2 cut(s)	425, 725
BseNI	ACTGG	1 cut(s)	533
BseRI	GAGGAG	1 cut(s)	529
BshFI	GGCC	2 cut(s)	223, 606
BsiHKAI	GWGCWC	1 cut(s)	424
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	35, 326
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	4 cut(s)	41, 230, 298, 626
BsmAI	GTCTC	2 cut(s)	289, 533
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	223, 606
Bso31I	GGTCTC	1 cut(s)	533
BsoBI	CYCGRG	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	3 cut(s)	7, 265, 314
BspACI	CCGC	4 cut(s)	32, 89, 133, 210
BspANI	GGCC	2 cut(s)	223, 606
BspCNI	CTCAG	2 cut(s)	426, 726
BspLI	GGNNCC	3 cut(s)	9, 324, 660
BspMAI	CTGCAG	1 cut(s)	159
BspPI	GGATC	3 cut(s)	2, 15, 260
BspTNI	GGTCTC	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	533
BssECI	CCNNGG	3 cut(s)	325, 326, 480
BssMI	GATC	3 cut(s)	7, 265, 314
BssSI	CACGAG	1 cut(s)	446
Bst2BI	CACGAG	1 cut(s)	446
Bst2UI	CCWGG	2 cut(s)	69, 375
Bst4CI	ACNGT	2 cut(s)	113, 587
Bst6I	CTCTTC	1 cut(s)	589
BstDEI	CTNAG	2 cut(s)	434, 734
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	2 cut(s)	80, 574
BstKTI	GATC	3 cut(s)	10, 268, 317
BstMAI	GTCTC	2 cut(s)	289, 533
BstMBI	GATC	3 cut(s)	7, 265, 314
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 389
BstNI	CCWGG	2 cut(s)	69, 375
BstSCI	CCNGG	4 cut(s)	67, 324, 325, 373
BstSFI	CTRYAG	2 cut(s)	155, 631
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	223, 606
BtgI	CCRYGG	1 cut(s)	480
BtrI	CACGTC	1 cut(s)	668
BtsCI	GGATG	2 cut(s)	80, 574
BtsIMutI	CAGTG	3 cut(s)	579, 731, 742
CaiI	CAGNNNCTG	1 cut(s)	398
Cfr13I	GGNCC	2 cut(s)	322, 467
Cfr9I	CCCGGG	1 cut(s)	325
CseI	GACGC	1 cut(s)	727
CsiI	ACCWGGT	1 cut(s)	373
Csp6I	GTAC	2 cut(s)	536, 588
CviAII	CATG	1 cut(s)	365
CviQI	GTAC	2 cut(s)	536, 588
DdeI	CTNAG	2 cut(s)	434, 734
DpnI	GATC	3 cut(s)	9, 267, 316
DpnII	GATC	3 cut(s)	7, 265, 314
DrdI	GACNNNNNNGTC	2 cut(s)	250, 672
DseDI	GACNNNNNNGTC	2 cut(s)	250, 672
Eam1104I	CTCTTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	589
EciI	GGCGGA	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	424
Eco31I	GGTCTC	1 cut(s)	533
Eco47I	GGWCC	2 cut(s)	322, 467
Eco53kI	GAGCTC	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	325
EcoICRI	GAGCTC	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	67, 373
EcoT38I	GRGCYC	1 cut(s)	424
FaeI	CATG	1 cut(s)	368
FaiI	YATR	9 cut(s)	18, 189, 262, 264, 336, 366, 697, 711, 724
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	2 cut(s)	67, 581
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	3 cut(s)	255, 663, 689
GluI	GCNGC	1 cut(s)	89
HaeIII	GGCC	2 cut(s)	223, 606
HapII	CCGG	2 cut(s)	35, 326
HgaI	GACGC	1 cut(s)	727
Hin1II	CATG	1 cut(s)	368
HinfI	GANTC	3 cut(s)	106, 251, 548
HpaII	CCGG	2 cut(s)	35, 326
Hpy166II	GTNNAC	4 cut(s)	431, 652, 677, 742
Hpy188I	TCNGA	3 cut(s)	85, 148, 644
Hpy8I	GTNNAC	4 cut(s)	431, 652, 677, 742
HpyAV	CCTTC	1 cut(s)	519
HpyCH4III	ACNGT	2 cut(s)	113, 587
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 389
HpyF3I	CTNAG	2 cut(s)	434, 734
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	1 cut(s)	368
Kzo9I	GATC	3 cut(s)	7, 265, 314
LmnI	GCTCC	3 cut(s)	135, 419, 658
LweI	GCATC	1 cut(s)	334
MabI	ACCWGGT	1 cut(s)	373
MaeI	CTAG	3 cut(s)	255, 663, 689
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	4 cut(s)	71, 241, 281, 385
MalI	GATC	3 cut(s)	9, 267, 316
MboI	GATC	3 cut(s)	7, 265, 314
MboII	GAAGA	3 cut(s)	135, 287, 606
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	3 cut(s)	35, 442, 507
MseI	TTAA	2 cut(s)	77, 728
MspI	CCGG	2 cut(s)	35, 326
MspR9I	CCNGG	4 cut(s)	69, 326, 327, 375
MvaI	CCWGG	2 cut(s)	69, 375
MwoI	GCNNNNNNNGC	2 cut(s)	97, 389
NciI	CCSGG	2 cut(s)	326, 327
NdeII	GATC	3 cut(s)	7, 265, 314
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	3 cut(s)	9, 324, 660
NmuCI	GTSAC	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	106, 548
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	1 cut(s)	90
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Psp124BI	GAGCTC	1 cut(s)	424
Psp6I	CCWGG	2 cut(s)	67, 373
PspGI	CCWGG	2 cut(s)	67, 373
PspN4I	GGNNCC	3 cut(s)	9, 324, 660
PspPI	GGNCC	2 cut(s)	322, 467
PstI	CTGCAG	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	2 cut(s)	537, 589
RsaNI	GTAC	2 cut(s)	536, 588
SacI	GAGCTC	1 cut(s)	424
SaqAI	TTAA	2 cut(s)	77, 728
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	3 cut(s)	7, 265, 314
Sau96I	GGNCC	2 cut(s)	322, 467
ScaI	AGTACT	1 cut(s)	537
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	4 cut(s)	69, 326, 327, 375
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	7 cut(s)	140, 376, 424, 453, 503, 670, 721
SexAI	ACCWGGT	1 cut(s)	373
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	2 cut(s)	155, 631
SinI	GGWCC	2 cut(s)	322, 467
SmaI	CCCGGG	1 cut(s)	327
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	4 cut(s)	32, 89, 133, 210
SspMI	CTAG	3 cut(s)	255, 663, 689
SstI	GAGCTC	1 cut(s)	424
StyD4I	CCNGG	4 cut(s)	67, 324, 325, 373
TaaI	ACNGT	2 cut(s)	113, 587
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	2 cut(s)	104, 512
TasI	AATT	1 cut(s)	61
TatI	WGTACW	1 cut(s)	535
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	106, 548
Tru1I	TTAA	2 cut(s)	77, 728
Tru9I	TTAA	2 cut(s)	77, 728
TscAI	CASTG	2 cut(s)	586, 738
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	353, 613
TspGWI	ACGGA	2 cut(s)	20, 497
TspMI	CCCGGG	1 cut(s)	325
TspRI	CASTG	2 cut(s)	586, 738
Van91I	CCANNNNNTGG	1 cut(s)	626
VpaK11BI	GGWCC	2 cut(s)	322, 467
XmaI	CCCGGG	1 cut(s)	325
XspI	CTAG	3 cut(s)	255, 663, 689
ZrmI	AGTACT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.