Rroxscaffold_7G00157750

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002860
Physical Location & Seq
Forward (+)
1471941 .. 1474327
2387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00157750.1

Sequence Viewer

Length: 852 bp
ATGGCGGATCCCTACCATAGATACGCTGCTCCGCCTGAACGAGGTAGTGTAGCAAATTCCAATTTTCCTGGTTACTTATCATCCGAAGCACCATCGTTACTGTCGAATCACACTTTTGCCCCTACTGATTTGAGAAGCTATTCTTCGGATTTTCGGCTGAGAGATAAATCGTTGGGGTCTGTTCCGTATGGTGTAGATGATAGTGTGGGTAGTAGAGTTCGTTCTGATTCGGGTGTTGGGGTGACTGCAGGGTCTAGCCTATATGATCCTTTGGAAGATACTTATCGAAGCCAGAGACAGGATATTGCGATGAGGTCAATGACGCCTGGGGTTTATGGTGTAGATGCTGTGAGTGTTAGTGTTCGTGGTGAACCTGGTCTTGCTGTAACGGCGGGGGCTGGTTATCCATCTCCTTTACGAGCTCAGACTTTACTAAGCCAAAGACATGTGGCTCGAGTGGGCATTGGCTCGAGTGTTTCTACTGACTTCAATAGAGAAAGGTCTGTGCCTTCGAGGAGTGGTGATGGTCTCCCAGTCCTGAAAGGGGAATCAAACATTTTGTTTGTGGATGGACTTCCCACTGACTGTACCAGAAGAGAAGTAGGCCATCTATTTCGTCCATTCATTGGCTTTAAAGAAATCAAAGTAGTTCACAAGGAGCCTAGACGCCAGAGTGGAGATAAGGCAATGGTTTTATGCTTTGTGGAGTTTGTGGATCCAAAGTGTGCTTTGACTGCCATGGAAGCTCTACAAGGTTACAAGTTTGATGACAAGAAACCTGATTCCCTTCCATTGAGGATCCACTTTGCACATTTTCCTTTCCGTCTACCATCTGATTCCGATCAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

283

Amino Acids

30.9

Weight (kDa)

8.38

Isoelectric Point (pI)

52.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 187 - 259 1.7e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 626
AccI GTMKAC 1 cut(s) 826
AciI CCGC 3 cut(s) 5, 32, 392
AclWI GGATC 7 cut(s) 2, 15, 260, 710, 723, 793, 806
AcsI RAATTY 1 cut(s) 55
AcyI GRCGYC 2 cut(s) 323, 667
AfaI GTAC 1 cut(s) 589
AfiI CCNNNNNNNGG 4 cut(s) 41, 298, 544, 626
AflIII ACRYGT 1 cut(s) 445
AgsI TTSAA 1 cut(s) 490
AjnI CCWGG 3 cut(s) 67, 325, 373
AluBI AGCT 3 cut(s) 138, 422, 746
AluI AGCT 3 cut(s) 138, 422, 746
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 2 cut(s) 289, 533
AlwI GGATC 7 cut(s) 2, 15, 260, 710, 723, 793, 806
Ama87I CYCGRG 2 cut(s) 453, 469
AoxI GGCC 1 cut(s) 604
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 55
Asp700I GAANNNNTTC 1 cut(s) 139
AsuHPI GGTGA 3 cut(s) 253, 380, 533
AvaI CYCGRG 2 cut(s) 453, 469
BamHI GGATCC 3 cut(s) 7, 715, 798
BanII GRGCYC 1 cut(s) 424
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 1 cut(s) 13
BccI CCATC 6 cut(s) 100, 415, 518, 563, 615, 838
BceAI ACGGC 1 cut(s) 405
BciT130I CCWGG 3 cut(s) 69, 327, 375
BcoDI GTCTC 2 cut(s) 289, 533
BfaI CTAG 2 cut(s) 255, 663
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 3 cut(s) 69, 327, 375
BmeT110I CYCGRG 2 cut(s) 453, 469
BmiI GGNNCC 4 cut(s) 9, 660, 717, 800
BmrFI CCNGG 3 cut(s) 69, 327, 375
BmrI ACTGGG 1 cut(s) 527
BmsI GCATC 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 527
BsaBI GATNNNNATC 2 cut(s) 282, 840
BsaHI GRCGYC 2 cut(s) 323, 667
BsaI GGTCTC 1 cut(s) 533
BsaJI CCNNGG 2 cut(s) 326, 738
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 298, 544, 626
Bse1I ACTGG 1 cut(s) 533
Bse3DI GCAATG 1 cut(s) 693
Bse8I GATNNNNATC 2 cut(s) 282, 840
BseBI CCWGG 3 cut(s) 69, 327, 375
BseDI CCNNGG 2 cut(s) 326, 738
BseGI GGATG 2 cut(s) 80, 574
BseJI GATNNNNATC 2 cut(s) 282, 840
BseLI CCNNNNNNNGG 4 cut(s) 41, 298, 544, 626
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 2 cut(s) 149, 437
BseNI ACTGG 1 cut(s) 533
BseRI GAGGAG 1 cut(s) 529
BseXI GCAGC 1 cut(s) 13
BshFI GGCC 1 cut(s) 606
BsiHKAI GWGCWC 1 cut(s) 424
BsiHKCI CYCGRG 2 cut(s) 453, 469
BslI CCNNNNNNNGG 4 cut(s) 41, 298, 544, 626
BsmAI GTCTC 2 cut(s) 289, 533
BsnI GGCC 1 cut(s) 606
Bso31I GGTCTC 1 cut(s) 533
BsoBI CYCGRG 2 cut(s) 453, 469
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 5 cut(s) 7, 265, 715, 798, 841
Bsp19I CCATGG 1 cut(s) 738
BspACI CCGC 3 cut(s) 5, 32, 392
BspANI GGCC 1 cut(s) 606
BspCNI CTCAG 2 cut(s) 150, 436
BspLI GGNNCC 4 cut(s) 9, 660, 717, 800
BspMAI CTGCAG 1 cut(s) 250
BspPI GGATC 7 cut(s) 2, 15, 260, 710, 723, 793, 806
BspTNI GGTCTC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 693
BsrI ACTGG 1 cut(s) 533
BssECI CCNNGG 2 cut(s) 326, 738
BssMI GATC 5 cut(s) 7, 265, 715, 798, 841
BssNI GRCGYC 2 cut(s) 323, 667
BssT1I CCWWGG 1 cut(s) 738
Bst2UI CCWGG 3 cut(s) 69, 327, 375
Bst4CI ACNGT 2 cut(s) 102, 587
Bst6I CTCTTC 1 cut(s) 589
BstACI GRCGYC 2 cut(s) 323, 667
BstDEI CTNAG 3 cut(s) 158, 423, 434
BstDSI CCRYGG 1 cut(s) 738
BstENI CCTNNNNNAGG 1 cut(s) 39
BstF5I GGATG 2 cut(s) 80, 574
BstKTI GATC 5 cut(s) 10, 268, 718, 801, 844
BstMAI GTCTC 2 cut(s) 289, 533
BstMBI GATC 5 cut(s) 7, 265, 715, 798, 841
BstMWI GCNNNNNNNGC 3 cut(s) 389, 734, 743
BstNI CCWGG 3 cut(s) 69, 327, 375
BstNSI RCATGY 1 cut(s) 449
BstSCI CCNGG 3 cut(s) 67, 325, 373
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 13
BstX2I RGATCY 3 cut(s) 7, 715, 798
BstYI RGATCY 3 cut(s) 7, 715, 798
BsuRI GGCC 1 cut(s) 606
BtgI CCRYGG 1 cut(s) 738
BtgZI GCGATG 1 cut(s) 323
BtsCI GGATG 2 cut(s) 80, 574
BtsIMutI CAGTG 1 cut(s) 579
CseI GACGC 2 cut(s) 331, 675
CsiI ACCWGGT 1 cut(s) 373
Csp6I GTAC 1 cut(s) 588
CviAII CATG 2 cut(s) 446, 739
CviQI GTAC 1 cut(s) 588
DdeI CTNAG 3 cut(s) 158, 423, 434
DpnI GATC 5 cut(s) 9, 267, 717, 800, 843
DpnII GATC 5 cut(s) 7, 265, 715, 798, 841
DraI TTTAAA 1 cut(s) 634
DrdI GACNNNNNNGTC 1 cut(s) 250
DseDI GACNNNNNNGTC 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 589
EarI CTCTTC 1 cut(s) 589
EciI GGCGGA 2 cut(s) 20, 21
Ecl136II GAGCTC 1 cut(s) 422
Eco130I CCWWGG 1 cut(s) 738
Eco24I GRGCYC 1 cut(s) 424
Eco31I GGTCTC 1 cut(s) 533
Eco53kI GAGCTC 1 cut(s) 422
Eco88I CYCGRG 2 cut(s) 453, 469
EcoICRI GAGCTC 1 cut(s) 422
EcoNI CCTNNNNNAGG 1 cut(s) 39
EcoRII CCWGG 3 cut(s) 67, 325, 373
EcoT14I CCWWGG 1 cut(s) 738
EcoT38I GRGCYC 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 738
FaeI CATG 2 cut(s) 449, 742
FaiI YATR 8 cut(s) 18, 189, 262, 264, 336, 447, 697, 740
FalI AAGNNNNNCTT 2 cut(s) 127, 159
FatI CATG 2 cut(s) 445, 738
FauI CCCGC 1 cut(s) 385
FblI GTMKAC 1 cut(s) 826
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 2 cut(s) 67, 581
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 2 cut(s) 255, 663
GluI GCNGC 1 cut(s) 27
HaeIII GGCC 1 cut(s) 606
HgaI GACGC 2 cut(s) 331, 675
Hin1I GRCGYC 2 cut(s) 323, 667
Hin1II CATG 2 cut(s) 449, 742
HinfI GANTC 5 cut(s) 106, 227, 548, 782, 836
HphI GGTGA 3 cut(s) 253, 380, 533
Hpy166II GTNNAC 3 cut(s) 371, 652, 827
Hpy188I TCNGA 7 cut(s) 85, 148, 226, 426, 835, 841, 846
Hpy188III TCNNGA 1 cut(s) 538
Hpy8I GTNNAC 3 cut(s) 371, 652, 827
HpyAV CCTTC 2 cut(s) 519, 797
HpyCH4III ACNGT 2 cut(s) 102, 587
HpyCH4V TGCA 2 cut(s) 248, 809
HpyF10VI GCNNNNNNNGC 3 cut(s) 389, 734, 743
HpyF3I CTNAG 3 cut(s) 158, 423, 434
Hsp92I GRCGYC 2 cut(s) 323, 667
Hsp92II CATG 2 cut(s) 449, 742
Kzo9I GATC 5 cut(s) 7, 265, 715, 798, 841
LmnI GCTCC 2 cut(s) 34, 658
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 1 cut(s) 334
MabI ACCWGGT 1 cut(s) 373
MaeI CTAG 2 cut(s) 255, 663
MaeIII GTNAC 5 cut(s) 71, 96, 241, 385, 755
MalI GATC 5 cut(s) 9, 267, 717, 800, 843
MboI GATC 5 cut(s) 7, 265, 715, 798, 841
MboII GAAGA 3 cut(s) 135, 287, 606
MflI RGATCY 3 cut(s) 7, 715, 798
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 2 cut(s) 55, 61
MnlI CCTC 4 cut(s) 35, 306, 507, 789
MroXI GAANNNNTTC 1 cut(s) 139
MseI TTAA 1 cut(s) 633
MspR9I CCNGG 3 cut(s) 69, 327, 375
MvaI CCWGG 3 cut(s) 69, 327, 375
MwoI GCNNNNNNNGC 3 cut(s) 389, 734, 743
NcoI CCATGG 1 cut(s) 738
NdeII GATC 5 cut(s) 7, 265, 715, 798, 841
NlaIII CATG 2 cut(s) 449, 742
NlaIV GGNNCC 4 cut(s) 9, 660, 717, 800
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 1 cut(s) 449
PaeR7I CTCGAG 2 cut(s) 453, 469
PciI ACATGT 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 5 cut(s) 106, 227, 548, 782, 836
PflMI CCANNNNNTGG 1 cut(s) 626
PkrI GCNGC 1 cut(s) 28
PscI ACATGT 1 cut(s) 445
Psp124BI GAGCTC 1 cut(s) 424
Psp6I CCWGG 3 cut(s) 67, 325, 373
PspGI CCWGG 3 cut(s) 67, 325, 373
PspN4I GGNNCC 4 cut(s) 9, 660, 717, 800
PspXI VCTCGAGB 2 cut(s) 453, 469
PsrI GAACNNNNNNTAC 2 cut(s) 205, 237
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 3 cut(s) 7, 715, 798
RsaI GTAC 1 cut(s) 589
RsaNI GTAC 1 cut(s) 588
SacI GAGCTC 1 cut(s) 424
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 5 cut(s) 7, 265, 715, 798, 841
ScrFI CCNGG 3 cut(s) 69, 327, 375
SduI GDGCHC 1 cut(s) 424
SetI ASST 9 cut(s) 46, 140, 317, 376, 424, 503, 748, 757, 781
SexAI ACCWGGT 1 cut(s) 373
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 246
Sfr274I CTCGAG 2 cut(s) 453, 469
SlaI CTCGAG 2 cut(s) 453, 469
SmlI CTYRAG 2 cut(s) 453, 469
SmoI CTYRAG 2 cut(s) 453, 469
Sse9I AATT 2 cut(s) 55, 61
SsiI CCGC 3 cut(s) 5, 32, 392
SspMI CTAG 2 cut(s) 255, 663
SstI GAGCTC 1 cut(s) 424
StyD4I CCNGG 3 cut(s) 67, 325, 373
StyI CCWWGG 1 cut(s) 738
TaaI ACNGT 2 cut(s) 102, 587
TaqI TCGA 5 cut(s) 104, 286, 454, 470, 512
TasI AATT 2 cut(s) 55, 61
TfiI GAWTC 5 cut(s) 106, 227, 548, 782, 836
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 613
TspGWI ACGGA 2 cut(s) 174, 812
TspRI CASTG 1 cut(s) 586
Van91I CCANNNNNTGG 1 cut(s) 626
XagI CCTNNNNNAGG 1 cut(s) 39
XapI RAATTY 1 cut(s) 55
XceI RCATGY 1 cut(s) 449
XhoI CTCGAG 2 cut(s) 453, 469
XmiI GTMKAC 1 cut(s) 826
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 2 cut(s) 255, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.