Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002860

Physical Location & Seq

Genomic Coordinates Reverse (-)

67537739 .. 67541255

Gene Structure 3517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG518500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAGGTCAATGACGCCTGGGGTTTATGGTGTAGATGCTGTGAGTGTTAGTGTTCGTGCTGAACCTCGTCTTACTGTAACAGCAGGGGCTGGTTTTCCATCTCCTTTACAAGCTCAGACTTTATTAAACCAAAGACATGAGGTTGGAGCTGGCATTGGCTCAAGTGTTTCTACTGACTTCAGTAGAGAAAGGTCTGTGCCTTCGAGGAGTGGTGATGGTCTCCCAGTCCTGAAAGGGGAATCAAACATTTTGTTTGTGGATGGACTTCCCACTGACTGTACCAGAAGAGAAGTAGGCCATCTATTTCGTCCATTCATTGGCTTTAAAGAAATCAAAGTAGTTCACAAGGAGCCTCGACGCGTAAGTGCACTCATTTGCCTAGTTCTATCAAGTAATTTTGATAGACATCATAAAGGTTTAACACTGAGAGTCCACTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

146

Amino Acids

15.89

Weight (kDa)

10.01

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31470 FvH4_2g31470
malus_domestica	MD08G1066100.v1.1 MD15G1055100.v1.1
prunus_persica	Prupe.1G408300_v2.0.a1
pyrus_communis	pycom08g05480 pycom15g05200
rosa_chinensis	RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331
rosa_laevigata	RLG00000010416
rosa_multiflora	Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750
rosa_rugosa	Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1
rosa_samantha	Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800
rosa_wichuraiana	Rw3G022150 Rw5G025820 Rw6G043740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccII	CGCG	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	163
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	2 cut(s)	235, 317
AflIII	ACRYGT	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	2 cut(s)	113, 149
AluI	AGCT	2 cut(s)	113, 149
Alw21I	GWGCWC	1 cut(s)	370
Alw26I	GTCTC	1 cut(s)	224
Alw44I	GTGCAC	1 cut(s)	366
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	1 cut(s)	295
ApaLI	GTGCAC	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	370
BccI	CCATC	4 cut(s)	106, 209, 254, 306
BciT130I	CCWGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	380
Bme1390I	CCNGG	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	18
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	25
BmuI	ACTGGG	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	405
BsaHI	GRCGYC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 317
Bse1I	ACTGG	1 cut(s)	224
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	1 cut(s)	265
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	2 cut(s)	235, 317
BseMII	CTCAG	2 cut(s)	128, 416
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	1 cut(s)	220
BseSI	GKGCMC	1 cut(s)	370
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	235, 317
BsmAI	GTCTC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	297
Bso31I	GGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	370
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	127, 417
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	351
BspTNI	GGTCTC	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	17
BssNI	GRCGYC	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	76, 278
Bst6I	CTCTTC	1 cut(s)	280
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	114, 425
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	360
BstMAI	GTCTC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	370
BstUI	CGCG	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	2 cut(s)	270, 422
Cac8I	GCNNGC	1 cut(s)	151
CaiI	CAGNNNCTG	1 cut(s)	89
CseI	GACGC	2 cut(s)	22, 366
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	7 cut(s)	89, 113, 149, 159, 297, 321, 352
CviKI_1	RGCY	7 cut(s)	89, 113, 149, 159, 297, 321, 352
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	2 cut(s)	114, 425
DraI	TTTAAA	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco31I	GGTCTC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	16
FaeI	CATG	1 cut(s)	140
FaiI	YATR	4 cut(s)	27, 138, 411, 439
FatI	CATG	1 cut(s)	136
FokI	GGATG	1 cut(s)	272
FspBI	CTAG	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	297
HgaI	GACGC	2 cut(s)	22, 366
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	140
HinfI	GANTC	2 cut(s)	239, 429
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	3 cut(s)	343, 368, 433
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	3 cut(s)	343, 368, 433
Hpy99I	CGWCG	1 cut(s)	360
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	2 cut(s)	76, 278
HpyCH4V	TGCA	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	114, 425
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	140
LmnI	GCTCC	2 cut(s)	146, 349
LpnPI	CCDG	8 cut(s)	3, 30, 69, 75, 135, 237, 242, 295
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	76
MboII	GAAGA	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	1 cut(s)	394
MluI	ACGCGT	1 cut(s)	358
MlyI	GAGTC	1 cut(s)	438
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	4 cut(s)	75, 133, 198, 363
MseI	TTAA	3 cut(s)	125, 324, 419
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
MvnI	CGCG	1 cut(s)	360
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	239
PflMI	CCANNNNNTGG	1 cut(s)	317
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	351
PstNI	CAGNNNCTG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SaqAI	TTAA	3 cut(s)	125, 324, 419
SchI	GAGTC	1 cut(s)	438
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	7 cut(s)	8, 67, 115, 144, 151, 194, 418
SfaNI	GCATC	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	1 cut(s)	394
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	76, 278
TaqI	TCGA	2 cut(s)	203, 355
TasI	AATT	1 cut(s)	394
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	3 cut(s)	125, 324, 419
Tru9I	TTAA	3 cut(s)	125, 324, 419
TscAI	CASTG	2 cut(s)	277, 429
TspDTI	ATGAA	1 cut(s)	304
TspRI	CASTG	2 cut(s)	277, 429
Van91I	CCANNNNNTGG	1 cut(s)	317
VneI	GTGCAC	1 cut(s)	366
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.