Rmu_co8395139.1_g000001

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8395139.1
OG0002860
Physical Location & Seq
Forward (+)
46 .. 408
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8395139.1_g000001.1.cds

Sequence Viewer

Length: 363 bp
atgacgcctggggtttatggtgtagatgctgtgagtgttagtgttcgtggtgaacctggtcttgctgtaccagcgggggctggttttccatctcctttacaagctctgactttactaaaccaaagacatgcccctggagtgggcattggctcgagtgtttctactgacattagtagagaaaggtctgtgccttcaaggagtggtgatggtctcccagtcctgaaaggggaatcaaacattttgtttgtggatggacttcccactgactgtaccagaagagaagtaggccgtatccttttgcttttcgtgtgtctatttttgcttgcctgtgaatgtttcaggtatgcaacatttccaggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

120

Amino Acids

12.55

Weight (kDa)

6.54

Isoelectric Point (pI)

65.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 74
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 69, 271
AfiI CCNNNNNNNGG 3 cut(s) 139, 140, 226
AgsI TTSAA 1 cut(s) 195
AjnI CCWGG 4 cut(s) 7, 55, 133, 355
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 151
AoxI GGCC 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 62, 215
AvaI CYCGRG 1 cut(s) 151
BccI CCATC 3 cut(s) 97, 200, 245
BceAI ACGGC 1 cut(s) 273
BciT130I CCWGG 4 cut(s) 9, 57, 135, 357
BciVI GTATCC 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 215
BfuI GTATCC 1 cut(s) 302
Bme1390I CCNGG 4 cut(s) 9, 57, 135, 357
BmeT110I CYCGRG 1 cut(s) 151
BmrFI CCNGG 4 cut(s) 9, 57, 135, 357
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 16
BmuI ACTGGG 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 8, 133
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 140, 226
Bse1I ACTGG 1 cut(s) 215
BseBI CCWGG 4 cut(s) 9, 57, 135, 357
BseDI CCNNGG 2 cut(s) 8, 133
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 3 cut(s) 139, 140, 226
BseNI ACTGG 1 cut(s) 215
BshFI GGCC 1 cut(s) 288
BsiHKCI CYCGRG 1 cut(s) 151
BslI CCNNNNNNNGG 3 cut(s) 139, 140, 226
BsmAI GTCTC 1 cut(s) 215
BsnI GGCC 1 cut(s) 288
Bso31I GGTCTC 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 151
BspACI CCGC 1 cut(s) 74
BspANI GGCC 1 cut(s) 288
BspTNI GGTCTC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 8, 133
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 4 cut(s) 9, 57, 135, 357
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 271
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 324
BstF5I GGATG 1 cut(s) 256
BstMAI GTCTC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 4 cut(s) 9, 57, 135, 357
BstNSI RCATGY 1 cut(s) 131
BstSCI CCNGG 4 cut(s) 7, 55, 133, 355
BsuI GTATCC 1 cut(s) 302
BsuRI GGCC 1 cut(s) 288
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 324
CseI GACGC 1 cut(s) 13
CsiI ACCWGGT 1 cut(s) 55
Csp6I GTAC 2 cut(s) 68, 270
CviAII CATG 1 cut(s) 128
CviJI RGCY 4 cut(s) 80, 104, 150, 288
CviKI_1 RGCY 4 cut(s) 80, 104, 150, 288
CviQI GTAC 2 cut(s) 68, 270
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Eco31I GGTCTC 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 151
EcoRII CCWGG 4 cut(s) 7, 55, 133, 355
FaeI CATG 1 cut(s) 131
FaiI YATR 3 cut(s) 18, 129, 345
FatI CATG 1 cut(s) 127
FauI CCCGC 1 cut(s) 67
FokI GGATG 1 cut(s) 263
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 1 cut(s) 288
HgaI GACGC 1 cut(s) 13
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 131
HinfI GANTC 1 cut(s) 230
HphI GGTGA 2 cut(s) 62, 215
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 1 cut(s) 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 131
LweI GCATC 1 cut(s) 16
MabI ACCWGGT 1 cut(s) 55
MboII GAAGA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 74
MspR9I CCNGG 4 cut(s) 9, 57, 135, 357
MvaI CCWGG 4 cut(s) 9, 57, 135, 357
MwoI GCNNNNNNNGC 1 cut(s) 71
NlaIII CATG 1 cut(s) 131
NspI RCATGY 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 151
PfeI GAWTC 1 cut(s) 230
PfoI TCCNGGA 1 cut(s) 355
Psp6I CCWGG 4 cut(s) 7, 55, 133, 355
PspGI CCWGG 4 cut(s) 7, 55, 133, 355
PspXI VCTCGAGB 1 cut(s) 151
RsaI GTAC 2 cut(s) 69, 271
RsaNI GTAC 2 cut(s) 68, 270
ScrFI CCNGG 4 cut(s) 9, 57, 135, 357
SetI ASST 4 cut(s) 58, 106, 185, 344
SexAI ACCWGGT 1 cut(s) 55
SfaNI GCATC 1 cut(s) 16
Sfr274I CTCGAG 1 cut(s) 151
SlaI CTCGAG 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
SsiI CCGC 1 cut(s) 74
StyD4I CCNGG 4 cut(s) 7, 55, 133, 355
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 152
TfiI GAWTC 1 cut(s) 230
TscAI CASTG 1 cut(s) 268
TspRI CASTG 1 cut(s) 268
XceI RCATGY 1 cut(s) 131
XhoI CTCGAG 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.