Rw6G043740

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002860
Physical Location & Seq
Reverse (-)
66956333 .. 66958674
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G043740.1

Sequence Viewer

Length: 870 bp
ATGGTGGATCCCTACTATAGATACGCTGCTCCGCTGGAACGAGGTAGTGTAGCAAATTCCAATTTTCCTGGTTACTTATCATCCGAAGCACCATCGTTACTATCGAATCACACTTTTGCCCCTACTGATTTGAGAAGCTATTCTTCGGATTTTCGGCTGAGAGATAAATCGTTGGGGTCTGTGCCGTATGGTGTAGATGATAGTGTGGGTAGTAGAGTTCGTTCTGATTCGGGTGTTGGGGTGACAGCAGGGTCTGGCCTATATGATCCTTTGGAAGATACTTATCGAAGCCAGAGACAGGATATTGCGATGAGGTCAATGACGCCTGGGGTTTATGGTGTAGATGCTGTGAGTGTTAGTGTTCGTGGTGAACCTGGTCTTGCTGTAACAGCGGGGGCTGGTTTTCCATCTCCTTTACAAGCTCTGACTTTACTAAACCAAAGACATGCCACTGGAGTGGGCATTGGCTCGAGTGTTTCTACTGACATTAGTAGAGAAAGGTCTGTGCCTTCAAGGAGTGGTGATGGTCTCCCAGTCCTGAAAGGGGAATCAAACATTTTGTTTGTGGATGGACTTCCCGCTGACTGTACCAGAAGAGAAGTAGGCCATCTATTTCGTCCATTCATTGGCTTTAAAGAAATCAAAGTAGTTCACAAGGAGCCTAGACGCCAGAGTGGAGATAAGGCAATGGTTTTATGCTTTGTGGAGTTTGTGGATCCAAAGTGTGCTTTGACTGCTATGGAAGCTCTACAAGGTTACAAGTTTGATGACAAGAAACCTGATTCCCTTCCATTGAGGATCCACTTTGCACATTTTCCTTTCCGTCTACCATCTGATTCCGATCAGAAACGAAGTGGAATCCGACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

289

Amino Acids

31.43

Weight (kDa)

8.38

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 187 - 259 5.8e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 626
AccI GTMKAC 1 cut(s) 826
AciI CCGC 3 cut(s) 32, 392, 579
AclWI GGATC 7 cut(s) 2, 15, 260, 710, 723, 793, 806
AcsI RAATTY 1 cut(s) 55
AcyI GRCGYC 2 cut(s) 323, 667
AfaI GTAC 1 cut(s) 589
AfiI CCNNNNNNNGG 3 cut(s) 298, 544, 626
AgsI TTSAA 1 cut(s) 513
AjnI CCWGG 3 cut(s) 67, 325, 373
AleI CACNNNNGTG 1 cut(s) 455
AluBI AGCT 3 cut(s) 138, 422, 746
AluI AGCT 3 cut(s) 138, 422, 746
Alw26I GTCTC 2 cut(s) 289, 533
AlwI GGATC 7 cut(s) 2, 15, 260, 710, 723, 793, 806
AlwNI CAGNNNCTG 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 469
AoxI GGCC 2 cut(s) 256, 604
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 55
Asp700I GAANNNNTTC 1 cut(s) 139
AsuHPI GGTGA 3 cut(s) 253, 380, 533
AvaI CYCGRG 1 cut(s) 469
BamHI GGATCC 3 cut(s) 7, 715, 798
BbvI GCAGC 1 cut(s) 13
BccI CCATC 6 cut(s) 100, 415, 518, 563, 615, 838
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 3 cut(s) 69, 327, 375
BcoDI GTCTC 2 cut(s) 289, 533
BfaI CTAG 1 cut(s) 663
BfmI CTRYAG 1 cut(s) 16
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 3 cut(s) 69, 327, 375
BmeT110I CYCGRG 1 cut(s) 469
BmiI GGNNCC 4 cut(s) 9, 660, 717, 800
BmrFI CCNGG 3 cut(s) 69, 327, 375
BmrI ACTGGG 1 cut(s) 527
BmsI GCATC 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 527
BpmI CTGGAG 1 cut(s) 474
BsaBI GATNNNNATC 2 cut(s) 282, 840
BsaHI GRCGYC 2 cut(s) 323, 667
BsaI GGTCTC 1 cut(s) 533
BsaJI CCNNGG 1 cut(s) 326
Bsc4I CCNNNNNNNGG 3 cut(s) 298, 544, 626
Bse1I ACTGG 2 cut(s) 457, 533
Bse3DI GCAATG 1 cut(s) 693
Bse8I GATNNNNATC 2 cut(s) 282, 840
BseBI CCWGG 3 cut(s) 69, 327, 375
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 2 cut(s) 80, 574
BseJI GATNNNNATC 2 cut(s) 282, 840
BseLI CCNNNNNNNGG 3 cut(s) 298, 544, 626
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 2 cut(s) 457, 533
BseXI GCAGC 1 cut(s) 13
BshFI GGCC 2 cut(s) 258, 606
BsiHKCI CYCGRG 1 cut(s) 469
BslI CCNNNNNNNGG 3 cut(s) 298, 544, 626
BsmAI GTCTC 2 cut(s) 289, 533
BsnI GGCC 2 cut(s) 258, 606
Bso31I GGTCTC 1 cut(s) 533
BsoBI CYCGRG 1 cut(s) 469
Bsp143I GATC 5 cut(s) 7, 265, 715, 798, 841
BspACI CCGC 3 cut(s) 32, 392, 579
BspANI GGCC 2 cut(s) 258, 606
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 4 cut(s) 9, 660, 717, 800
BspPI GGATC 7 cut(s) 2, 15, 260, 710, 723, 793, 806
BspTNI GGTCTC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 693
BsrI ACTGG 2 cut(s) 457, 533
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 5 cut(s) 7, 265, 715, 798, 841
BssNI GRCGYC 2 cut(s) 323, 667
Bst2UI CCWGG 3 cut(s) 69, 327, 375
Bst4CI ACNGT 1 cut(s) 587
Bst6I CTCTTC 1 cut(s) 589
BstACI GRCGYC 2 cut(s) 323, 667
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 2 cut(s) 80, 574
BstKTI GATC 5 cut(s) 10, 268, 718, 801, 844
BstMAI GTCTC 2 cut(s) 289, 533
BstMBI GATC 5 cut(s) 7, 265, 715, 798, 841
BstMWI GCNNNNNNNGC 3 cut(s) 389, 734, 743
BstNI CCWGG 3 cut(s) 69, 327, 375
BstNSI RCATGY 1 cut(s) 449
BstSCI CCNGG 3 cut(s) 67, 325, 373
BstSFI CTRYAG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 13
BstX2I RGATCY 3 cut(s) 7, 715, 798
BstXI CCANNNNNNTGG 1 cut(s) 457
BstYI RGATCY 3 cut(s) 7, 715, 798
BsuRI GGCC 2 cut(s) 258, 606
BtgZI GCGATG 1 cut(s) 323
BtsCI GGATG 2 cut(s) 80, 574
BtsIMutI CAGTG 2 cut(s) 450, 865
CaiI CAGNNNCTG 1 cut(s) 254
CseI GACGC 2 cut(s) 331, 675
CsiI ACCWGGT 1 cut(s) 373
Csp6I GTAC 1 cut(s) 588
CviAII CATG 1 cut(s) 446
CviQI GTAC 1 cut(s) 588
DdeI CTNAG 1 cut(s) 158
DpnI GATC 5 cut(s) 9, 267, 717, 800, 843
DpnII GATC 5 cut(s) 7, 265, 715, 798, 841
DraI TTTAAA 1 cut(s) 634
DrdI GACNNNNNNGTC 1 cut(s) 250
DseDI GACNNNNNNGTC 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 589
EarI CTCTTC 1 cut(s) 589
Eco31I GGTCTC 1 cut(s) 533
Eco88I CYCGRG 1 cut(s) 469
EcoRII CCWGG 3 cut(s) 67, 325, 373
FaeI CATG 1 cut(s) 449
FaiI YATR 8 cut(s) 18, 189, 262, 264, 336, 447, 697, 740
FalI AAGNNNNNCTT 2 cut(s) 127, 159
FatI CATG 1 cut(s) 445
FauI CCCGC 2 cut(s) 385, 586
FblI GTMKAC 1 cut(s) 826
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 2 cut(s) 67, 581
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 663
GluI GCNGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 474
HaeIII GGCC 2 cut(s) 258, 606
HgaI GACGC 2 cut(s) 331, 675
Hin1I GRCGYC 2 cut(s) 323, 667
Hin1II CATG 1 cut(s) 449
HinfI GANTC 6 cut(s) 106, 227, 548, 782, 836, 858
HphI GGTGA 3 cut(s) 253, 380, 533
Hpy166II GTNNAC 3 cut(s) 371, 652, 827
Hpy188I TCNGA 8 cut(s) 85, 148, 226, 426, 835, 841, 846, 863
Hpy188III TCNNGA 1 cut(s) 538
Hpy8I GTNNAC 3 cut(s) 371, 652, 827
HpyAV CCTTC 2 cut(s) 519, 797
HpyCH4III ACNGT 1 cut(s) 587
HpyCH4V TGCA 1 cut(s) 809
HpyF10VI GCNNNNNNNGC 3 cut(s) 389, 734, 743
HpyF3I CTNAG 1 cut(s) 158
Hsp92I GRCGYC 2 cut(s) 323, 667
Hsp92II CATG 1 cut(s) 449
Kzo9I GATC 5 cut(s) 7, 265, 715, 798, 841
LmnI GCTCC 2 cut(s) 34, 658
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 1 cut(s) 334
MabI ACCWGGT 1 cut(s) 373
MaeI CTAG 1 cut(s) 663
MaeIII GTNAC 5 cut(s) 71, 96, 241, 385, 755
MalI GATC 5 cut(s) 9, 267, 717, 800, 843
MboI GATC 5 cut(s) 7, 265, 715, 798, 841
MboII GAAGA 3 cut(s) 135, 287, 606
MflI RGATCY 3 cut(s) 7, 715, 798
MluCI AATT 2 cut(s) 55, 61
MnlI CCTC 3 cut(s) 35, 306, 789
MroXI GAANNNNTTC 1 cut(s) 139
MseI TTAA 1 cut(s) 633
MslI CAYNNNNRTG 1 cut(s) 455
MspA1I CMGCKG 3 cut(s) 34, 392, 581
MspR9I CCNGG 3 cut(s) 69, 327, 375
MvaI CCWGG 3 cut(s) 69, 327, 375
MwoI GCNNNNNNNGC 3 cut(s) 389, 734, 743
NdeII GATC 5 cut(s) 7, 265, 715, 798, 841
NlaIII CATG 1 cut(s) 449
NlaIV GGNNCC 4 cut(s) 9, 660, 717, 800
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 1 cut(s) 449
OliI CACNNNNGTG 1 cut(s) 455
PaeR7I CTCGAG 1 cut(s) 469
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 6 cut(s) 106, 227, 548, 782, 836, 858
PflMI CCANNNNNTGG 1 cut(s) 626
PkrI GCNGC 1 cut(s) 28
Psp6I CCWGG 3 cut(s) 67, 325, 373
PspGI CCWGG 3 cut(s) 67, 325, 373
PspN4I GGNNCC 4 cut(s) 9, 660, 717, 800
PspXI VCTCGAGB 1 cut(s) 469
PsrI GAACNNNNNNTAC 2 cut(s) 205, 237
PstNI CAGNNNCTG 1 cut(s) 254
PsuI RGATCY 3 cut(s) 7, 715, 798
RsaI GTAC 1 cut(s) 589
RsaNI GTAC 1 cut(s) 588
RseI CAYNNNNRTG 1 cut(s) 455
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 5 cut(s) 7, 265, 715, 798, 841
ScrFI CCNGG 3 cut(s) 69, 327, 375
SetI ASST 9 cut(s) 46, 140, 317, 376, 424, 503, 748, 757, 781
SexAI ACCWGGT 1 cut(s) 373
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 16
Sfr274I CTCGAG 1 cut(s) 469
SlaI CTCGAG 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 2 cut(s) 55, 61
SsiI CCGC 3 cut(s) 32, 392, 579
SspMI CTAG 1 cut(s) 663
StyD4I CCNGG 3 cut(s) 67, 325, 373
TaaI ACNGT 1 cut(s) 587
TaqI TCGA 3 cut(s) 104, 286, 470
TasI AATT 2 cut(s) 55, 61
TfiI GAWTC 6 cut(s) 106, 227, 548, 782, 836, 858
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 613
TspGWI ACGGA 1 cut(s) 812
TspRI CASTG 1 cut(s) 457
Van91I CCANNNNNTGG 1 cut(s) 626
XapI RAATTY 1 cut(s) 55
XceI RCATGY 1 cut(s) 449
XhoI CTCGAG 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 826
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.