Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001461.1

Orthogroup ID

OG0002860

Physical Location & Seq

Genomic Coordinates Reverse (-)

315961 .. 317740

Gene Structure 1780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001461.1_g000089.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggcggatccctaccatagatacgctgctccgccggaacgaggtttttcactttgccctatccctaatttcaccgccaccaattttcacttttccgaacaaaatcacgatgatagtgtgggtagtagagttcgttctgattcgggtgttagggtgacagcagggtctagcctatatgatcctttggaagatacttatcgaagccagagacatgatattgcggtgagttactttgagtcttatgctgtgagtgttagtgttcatggtgagcctggtcttactgtaacagcaggggctggttttccaactcctttacaagctcagaccttaccaaaccaaagacatgaggtcggagctggcattggctcaagtgtttctactgactttagtagagaaaggtatgtgccttcaaggagtggtgatggtctcccagtcctaaaaggggaatcaaacattttgtttgtggatggttacaagtttgatgacaagaaacctgattcccttccattgtggatccactttgcacattttccttttcgtctaccatctgattctgatcagaaacgaactggaatccgacactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

194

Amino Acids

21.43

Weight (kDa)

6.11

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31470 FvH4_2g31470
malus_domestica	MD08G1066100.v1.1 MD15G1055100.v1.1
prunus_persica	Prupe.1G408300_v2.0.a1
pyrus_communis	pycom08g05480 pycom15g05200
rosa_chinensis	RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331
rosa_laevigata	RLG00000010416
rosa_multiflora	Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750
rosa_rugosa	Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1
rosa_samantha	Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800
rosa_wichuraiana	Rw3G022150 Rw5G025820 Rw6G043740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
AccI	GTMKAC	1 cut(s)	541
AciI	CCGC	4 cut(s)	5, 32, 75, 221
AclWI	GGATC	5 cut(s)	2, 15, 173, 508, 521
AfiI	CCNNNNNNNGG	2 cut(s)	41, 442
AgsI	TTSAA	1 cut(s)	411
AhdI	GACNNNNNGTC	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	2 cut(s)	320, 356
AluI	AGCT	2 cut(s)	320, 356
Alw26I	GTCTC	2 cut(s)	202, 431
AlwI	GGATC	5 cut(s)	2, 15, 173, 508, 521
AlwNI	CAGNNNCTG	1 cut(s)	296
ApeKI	GCWGC	1 cut(s)	26
AsuHPI	GGTGA	5 cut(s)	64, 166, 235, 278, 431
BamHI	GGATCC	2 cut(s)	7, 513
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	3 cut(s)	416, 461, 553
BciT130I	CCWGG	1 cut(s)	273
BclI	TGATCA	1 cut(s)	556
BcoDI	GTCTC	2 cut(s)	202, 431
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	273
BmeRI	GACNNNNNGTC	1 cut(s)	347
BmiI	GGNNCC	2 cut(s)	9, 515
BmrFI	CCNGG	1 cut(s)	273
BmrI	ACTGGG	1 cut(s)	425
BmuI	ACTGGG	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	352
BsaBI	GATNNNNATC	2 cut(s)	195, 555
BsaI	GGTCTC	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 442
Bse1I	ACTGG	2 cut(s)	431, 574
Bse8I	GATNNNNATC	2 cut(s)	195, 555
BseBI	CCWGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	472
BseJI	GATNNNNATC	2 cut(s)	195, 555
BseLI	CCNNNNNNNGG	2 cut(s)	41, 442
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	2 cut(s)	431, 574
BseXI	GCAGC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	41, 442
BsmAI	GTCTC	2 cut(s)	202, 431
Bso31I	GGTCTC	1 cut(s)	431
Bsp143I	GATC	4 cut(s)	7, 178, 513, 556
BspACI	CCGC	4 cut(s)	5, 32, 75, 221
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	9, 515
BspPI	GGATC	5 cut(s)	2, 15, 173, 508, 521
BspTNI	GGTCTC	1 cut(s)	431
BsrI	ACTGG	2 cut(s)	431, 574
BssMI	GATC	4 cut(s)	7, 178, 513, 556
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	472
BstKTI	GATC	4 cut(s)	10, 181, 516, 559
BstMAI	GTCTC	2 cut(s)	202, 431
BstMBI	GATC	4 cut(s)	7, 178, 513, 556
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	13
BstX2I	RGATCY	2 cut(s)	7, 513
BstYI	RGATCY	2 cut(s)	7, 513
BtsCI	GGATG	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	580
Cac8I	GCNNGC	1 cut(s)	358
CaiI	CAGNNNCTG	1 cut(s)	296
CviAII	CATG	3 cut(s)	212, 263, 344
CviJI	RGCY	7 cut(s)	171, 204, 271, 296, 320, 356, 366
CviKI_1	RGCY	7 cut(s)	171, 204, 271, 296, 320, 356, 366
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	4 cut(s)	9, 180, 515, 558
DpnII	GATC	4 cut(s)	7, 178, 513, 556
DrdI	GACNNNNNNGTC	1 cut(s)	163
DriI	GACNNNNNGTC	1 cut(s)	347
DseDI	GACNNNNNNGTC	1 cut(s)	163
Eam1105I	GACNNNNNGTC	1 cut(s)	347
EciI	GGCGGA	2 cut(s)	20, 21
Eco31I	GGTCTC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	271
FaeI	CATG	3 cut(s)	215, 266, 347
FaiI	YATR	8 cut(s)	18, 175, 177, 213, 243, 264, 345, 402
FatI	CATG	3 cut(s)	211, 262, 343
FbaI	TGATCA	1 cut(s)	556
FblI	GTMKAC	1 cut(s)	541
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	1 cut(s)	27
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	3 cut(s)	215, 266, 347
HinfI	GANTC	6 cut(s)	140, 236, 446, 497, 551, 573
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	5 cut(s)	64, 166, 235, 278, 431
Hpy166II	GTNNAC	1 cut(s)	542
Hpy188I	TCNGA	8 cut(s)	97, 139, 324, 353, 550, 556, 561, 578
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	542
HpyAV	CCTTC	2 cut(s)	417, 512
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	1 cut(s)	524
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	3 cut(s)	215, 266, 347
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	4 cut(s)	7, 178, 513, 556
LmnI	GCTCC	2 cut(s)	34, 353
Lsp1109I	GCAGC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	4 cut(s)	154, 227, 283, 470
MalI	GATC	4 cut(s)	9, 180, 515, 558
MboI	GATC	4 cut(s)	7, 178, 513, 556
MboII	GAAGA	1 cut(s)	200
MflI	RGATCY	2 cut(s)	7, 513
MluCI	AATT	2 cut(s)	67, 82
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	2 cut(s)	329, 331
MnlI	CCTC	2 cut(s)	35, 340
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
NdeII	GATC	4 cut(s)	7, 178, 513, 556
NlaIII	CATG	3 cut(s)	215, 266, 347
NlaIV	GGNNCC	2 cut(s)	9, 515
NmuCI	GTSAC	1 cut(s)	154
PfeI	GAWTC	5 cut(s)	140, 446, 497, 551, 573
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	9, 515
PsrI	GAACNNNNNNTAC	2 cut(s)	118, 150
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	7, 513
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	4 cut(s)	7, 178, 513, 556
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	7 cut(s)	46, 322, 329, 351, 358, 401, 496
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	2 cut(s)	67, 82
SsiI	CCGC	4 cut(s)	5, 32, 75, 221
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	199
TasI	AATT	2 cut(s)	67, 82
TfiI	GAWTC	5 cut(s)	140, 446, 497, 551, 573
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	541
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.