Rroxscaffold_2G00123020

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002860
Physical Location & Seq
Reverse (-)
56598549 .. 56600328
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123020.1

Sequence Viewer

Length: 885 bp
ATGGCGGATCGCTACCATAGATACGCTGCTCCGCCGGAACAAGCAAAGTCCAATTTTCCTGGTTACTTATCATCCGAAGCACCATCGTTACTATCGAATCACACTTTTGCCCCTACTGATTTGAGAACCTATTCTTCGGATTTTCTGCTTAGAGATGTAAGAAATGATAGTGTGGGTAGTAGAGTTCGTTCTGATTCAGGTGTTAGGGTGACAGCAGGGTCTAGCCTATATGATCCTTTGGAAGATACTTATCGAAGCCAGAGACATGATATTGCGGTGAAATTGTGTTGTTCTGTCTGTTTTCACATGAGGTCAATGATGCCTGGGGTTTATGGTGTAGATGCTGTGAGTCTTAGTGTTCATGGTGAACCTGGTCTTACTGTAACAGCAGGGGCTGGTTTTCCAACTCCTTTACAAGCTCAGACTTTACCAAACCAAAGACATGAGGTCGGAGCTAGCATTGGCTCAAGTGTTTCTACTGACTTTAGTAGAGAAAGTTATGTGCCTTCAAGGAGTGGTGATGGTCTCCCAGTCCTAAAAGGGGAATCAAACATTTTGTTTGTGGATGGACTTCCCACTGACTATACCAGAAGAGAAGTAGGCTATCTATTTCGTCCATTCATTGGCTTTAAAGAAATCAAAGTGGTTCACAAGGAGCCTAGACGCCTAAGTGCACTCATTTGCCTAAGTGGAGATAAGGCAATGGTTTTATGCTTTGCAGAATTTGTGGATCGAAAGTGTGCTTTGACAGCTATGGAAGCTCTACAAGGTTACAAGTTTGATGACAAGAAACCTGATTCCCTTCCATTGTGGATCCACTTTGCACATTTTCCTTTTCGTCTACCATCTGATTCTGATCAGAAACGAACTGGAATCCGACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

294

Amino Acids

32.6

Weight (kDa)

8.18

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 186 - 264 2.8e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 217
AccB7I CCANNNNNTGG 1 cut(s) 623
AccI GTMKAC 1 cut(s) 841
AciI CCGC 3 cut(s) 5, 32, 275
AclWI GGATC 5 cut(s) 15, 227, 738, 808, 821
AcsI RAATTY 1 cut(s) 722
AcyI GRCGYC 1 cut(s) 664
AfiI CCNNNNNNNGG 2 cut(s) 541, 623
AgsI TTSAA 1 cut(s) 510
AhdI GACNNNNNGTC 1 cut(s) 446
AjnI CCWGG 3 cut(s) 58, 322, 370
AluBI AGCT 4 cut(s) 419, 455, 752, 761
AluI AGCT 4 cut(s) 419, 455, 752, 761
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 2 cut(s) 256, 530
Alw44I GTGCAC 1 cut(s) 672
AlwI GGATC 5 cut(s) 15, 227, 738, 808, 821
AlwNI CAGNNNCTG 1 cut(s) 395
ApaLI GTGCAC 1 cut(s) 672
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 722
Asp700I GAANNNNTTC 1 cut(s) 130
AsuHPI GGTGA 4 cut(s) 220, 289, 377, 530
AsuNHI GCTAGC 1 cut(s) 455
BaeGI GKGCMC 1 cut(s) 676
BamHI GGATCC 1 cut(s) 813
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 1 cut(s) 13
BccI CCATC 4 cut(s) 91, 515, 560, 853
BciT130I CCWGG 3 cut(s) 60, 324, 372
BclI TGATCA 1 cut(s) 856
BcoDI GTCTC 2 cut(s) 256, 530
BfaI CTAG 3 cut(s) 222, 456, 660
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 3 cut(s) 60, 324, 372
BmeRI GACNNNNNGTC 1 cut(s) 446
BmiI GGNNCC 2 cut(s) 657, 815
BmrFI CCNGG 3 cut(s) 60, 324, 372
BmrI ACTGGG 1 cut(s) 524
BmsI GCATC 2 cut(s) 309, 331
BmtI GCTAGC 1 cut(s) 459
BmuI ACTGGG 1 cut(s) 524
BpuEI CTTGAG 1 cut(s) 451
BsaBI GATNNNNATC 2 cut(s) 249, 855
BsaHI GRCGYC 1 cut(s) 664
BsaI GGTCTC 1 cut(s) 530
BsaJI CCNNGG 1 cut(s) 323
Bsc4I CCNNNNNNNGG 2 cut(s) 541, 623
Bse1I ACTGG 2 cut(s) 530, 874
Bse3DI GCAATG 1 cut(s) 708
Bse8I GATNNNNATC 2 cut(s) 249, 855
BseBI CCWGG 3 cut(s) 60, 324, 372
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 2 cut(s) 71, 571
BseJI GATNNNNATC 2 cut(s) 249, 855
BseLI CCNNNNNNNGG 2 cut(s) 541, 623
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 2 cut(s) 530, 874
BseSI GKGCMC 1 cut(s) 676
BseXI GCAGC 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 676
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 541, 623
BsmAI GTCTC 2 cut(s) 256, 530
Bso31I GGTCTC 1 cut(s) 530
Bsp1286I GDGCHC 1 cut(s) 676
Bsp143I GATC 5 cut(s) 7, 232, 730, 813, 856
BspACI CCGC 3 cut(s) 5, 32, 275
BspCNI CTCAG 1 cut(s) 433
BspLI GGNNCC 2 cut(s) 657, 815
BspOI GCTAGC 1 cut(s) 459
BspPI GGATC 5 cut(s) 15, 227, 738, 808, 821
BspTNI GGTCTC 1 cut(s) 530
BsrDI GCAATG 1 cut(s) 708
BsrI ACTGG 2 cut(s) 530, 874
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 5 cut(s) 7, 232, 730, 813, 856
BssNI GRCGYC 1 cut(s) 664
Bst2UI CCWGG 3 cut(s) 60, 324, 372
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 1 cut(s) 586
BstACI GRCGYC 1 cut(s) 664
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 5 cut(s) 149, 353, 420, 668, 686
BstF5I GGATG 2 cut(s) 71, 571
BstKTI GATC 5 cut(s) 10, 235, 733, 816, 859
BstMAI GTCTC 2 cut(s) 256, 530
BstMBI GATC 5 cut(s) 7, 232, 730, 813, 856
BstMWI GCNNNNNNNGC 2 cut(s) 749, 758
BstNI CCWGG 3 cut(s) 60, 324, 372
BstSCI CCNGG 3 cut(s) 58, 322, 370
BstSLI GKGCMC 1 cut(s) 676
BstV1I GCAGC 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 813
BstYI RGATCY 1 cut(s) 813
BtsCI GGATG 2 cut(s) 71, 571
BtsIMutI CAGTG 2 cut(s) 576, 880
Cac8I GCNNGC 1 cut(s) 457
CaiI CAGNNNCTG 1 cut(s) 395
CseI GACGC 1 cut(s) 672
CsiI ACCWGGT 1 cut(s) 370
CviAII CATG 4 cut(s) 266, 307, 362, 443
DdeI CTNAG 5 cut(s) 149, 353, 420, 668, 686
DpnI GATC 5 cut(s) 9, 234, 732, 815, 858
DpnII GATC 5 cut(s) 7, 232, 730, 813, 856
DraI TTTAAA 1 cut(s) 631
DrdI GACNNNNNNGTC 1 cut(s) 217
DriI GACNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 586
Eam1105I GACNNNNNGTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 586
EciI GGCGGA 2 cut(s) 20, 21
Eco31I GGTCTC 1 cut(s) 530
EcoRII CCWGG 3 cut(s) 58, 322, 370
FaeI CATG 4 cut(s) 269, 310, 365, 446
FatI CATG 4 cut(s) 265, 306, 361, 442
FbaI TGATCA 1 cut(s) 856
FblI GTMKAC 1 cut(s) 841
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 2 cut(s) 58, 578
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 3 cut(s) 222, 456, 660
GluI GCNGC 1 cut(s) 27
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 672
Hin1I GRCGYC 1 cut(s) 664
Hin1II CATG 4 cut(s) 269, 310, 365, 446
HinfI GANTC 7 cut(s) 97, 194, 349, 545, 797, 851, 873
HpaII CCGG 1 cut(s) 35
HphI GGTGA 4 cut(s) 220, 289, 377, 530
Hpy166II GTNNAC 4 cut(s) 368, 649, 674, 842
Hpy188I TCNGA 9 cut(s) 76, 139, 193, 423, 452, 850, 856, 861, 878
Hpy8I GTNNAC 4 cut(s) 368, 649, 674, 842
HpyAV CCTTC 2 cut(s) 516, 812
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4V TGCA 3 cut(s) 674, 719, 824
HpyF10VI GCNNNNNNNGC 2 cut(s) 749, 758
HpyF3I CTNAG 5 cut(s) 149, 353, 420, 668, 686
Hsp92I GRCGYC 1 cut(s) 664
Hsp92II CATG 4 cut(s) 269, 310, 365, 446
Ksp22I TGATCA 1 cut(s) 856
Kzo9I GATC 5 cut(s) 7, 232, 730, 813, 856
LmnI GCTCC 3 cut(s) 34, 452, 655
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 2 cut(s) 309, 331
MabI ACCWGGT 1 cut(s) 370
MaeI CTAG 3 cut(s) 222, 456, 660
MaeIII GTNAC 5 cut(s) 62, 87, 208, 382, 770
MalI GATC 5 cut(s) 9, 234, 732, 815, 858
MboI GATC 5 cut(s) 7, 232, 730, 813, 856
MboII GAAGA 3 cut(s) 126, 254, 603
MflI RGATCY 1 cut(s) 813
MhlI GDGCHC 1 cut(s) 676
MluCI AATT 3 cut(s) 52, 281, 722
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 2 cut(s) 428, 430
MnlI CCTC 2 cut(s) 303, 439
MroXI GAANNNNTTC 1 cut(s) 130
MseI TTAA 1 cut(s) 630
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 3 cut(s) 60, 324, 372
MvaI CCWGG 3 cut(s) 60, 324, 372
MwoI GCNNNNNNNGC 2 cut(s) 749, 758
NdeII GATC 5 cut(s) 7, 232, 730, 813, 856
NheI GCTAGC 1 cut(s) 455
NlaIII CATG 4 cut(s) 269, 310, 365, 446
NlaIV GGNNCC 2 cut(s) 657, 815
NmuCI GTSAC 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 130
PfeI GAWTC 6 cut(s) 97, 194, 545, 797, 851, 873
PflMI CCANNNNNTGG 1 cut(s) 623
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 357
Psp6I CCWGG 3 cut(s) 58, 322, 370
PspGI CCWGG 3 cut(s) 58, 322, 370
PspN4I GGNNCC 2 cut(s) 657, 815
PsrI GAACNNNNNNTAC 2 cut(s) 172, 204
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 1 cut(s) 813
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 5 cut(s) 7, 232, 730, 813, 856
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 3 cut(s) 60, 324, 372
SduI GDGCHC 1 cut(s) 676
SexAI ACCWGGT 1 cut(s) 370
SfaNI GCATC 2 cut(s) 309, 331
SmlI CTYRAG 1 cut(s) 466
SmoI CTYRAG 1 cut(s) 466
Sse9I AATT 3 cut(s) 52, 281, 722
SsiI CCGC 3 cut(s) 5, 32, 275
SspMI CTAG 3 cut(s) 222, 456, 660
StyD4I CCNGG 3 cut(s) 58, 322, 370
TaaI ACNGT 1 cut(s) 382
TaqI TCGA 3 cut(s) 95, 253, 733
TasI AATT 3 cut(s) 52, 281, 722
TfiI GAWTC 6 cut(s) 97, 194, 545, 797, 851, 873
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 1 cut(s) 583
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 2 cut(s) 350, 610
TspRI CASTG 1 cut(s) 583
Van91I CCANNNNNTGG 1 cut(s) 623
VneI GTGCAC 1 cut(s) 672
XapI RAATTY 1 cut(s) 722
XmiI GTMKAC 1 cut(s) 841
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 3 cut(s) 222, 456, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.