Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002860

Physical Location & Seq

Genomic Coordinates Reverse (-)

39726465 .. 39734309

Gene Structure 7845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0337400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCGTCGCAATCAGATCACCAGGCTAAGATAATTGATGGCAAAGCCATAGCACAGACCATCCGATCTGAAATTGCTGAGGAAGTTCGCCATCTCTCTCAGAAATATGGCAAGGTCCCTGGACTGGCAGTAGTGATTGTGGGGAGCAGGAAGGACTCCCAAAGCTATGTCAGCATGAAGCGAAAGGCATGCGCTGAAGTTGGCATTAAATCTGTCGACATAGATCTCCCTGAGAATGTGTTCCTAGATGATCTCATTGCCAAAGTTCACGAATTAAATGCGAATCCTGATGTACATGGCATACTTGTTCAGCTTCCATTGCCAAGGCATATTAATGAAGAGAAAGTGTTAAGTGAAATCAGCATCGAGAAGGATGTAGATGGGTTTCATCCTCTCAACATCGGCAAACTTGCAATGAAAGGCAGAGAACCTTTATTCCTCCCTTGCACTCCCAAGGGCTGTCTTGAACTTCTGTCGCGAAGTGGTATAAGCATAACGGGAAAGAAGGCAGTCGTGGTGGGAAGAAGTAACATAGTTGGATTGCCAGTTTCATTGCTGCTTTTGAAAGCCAATGCTACTGTTACCGTGGTTCATTCCAACACTCCTGATCCAGAGAGTATCATTCGTGAAGCGGACATTGTTATTGCTGCAGCAGGACAGGCAATGATGATCAAGGGTAGTTGGATAAAACCAGGTGCTGCAATTATAGATGTTGGCACAAATGCTGTAGATGACTCCAGTAGAAAGTCAGGTTATAGATTGGTCGGGGATGTAGATTTCCAGGAAGCATGTAAGGTAGCTGGATGGATAACTCCAGTTCCTGGTGGAGTTGGCCCGATGACTGTTGCAATGCTTCTCAAGAACACATTGGATGGTGCTAAGCGAGTGATTGTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

299

Amino Acids

31.91

Weight (kDa)

8.26

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THF_DHG_CYH	PF00763	12 - 127	1.8e-42	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
THF_DHG_CYH_C	PF02882	148 - 295	2.8e-60	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31470 FvH4_2g31470
malus_domestica	MD08G1066100.v1.1 MD15G1055100.v1.1
prunus_persica	Prupe.1G408300_v2.0.a1
pyrus_communis	pycom08g05480 pycom15g05200
rosa_chinensis	RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331
rosa_laevigata	RLG00000010416
rosa_multiflora	Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750
rosa_rugosa	Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1
rosa_samantha	Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800
rosa_wichuraiana	Rw3G022150 Rw5G025820 Rw6G043740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	821
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	1 cut(s)	478
AciI	CCGC	1 cut(s)	632
AclWI	GGATC	1 cut(s)	602
AcuI	CTGAAG	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	124, 821
AgsI	TTSAA	2 cut(s)	467, 565
AjnI	CCWGG	5 cut(s)	21, 118, 691, 780, 820
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
AluBI	AGCT	3 cut(s)	165, 313, 800
AluI	AGCT	3 cut(s)	165, 313, 800
AlwI	GGATC	1 cut(s)	602
AlwNI	CAGNNNCTG	2 cut(s)	698, 821
AoxI	GGCC	1 cut(s)	832
ApeKI	GCWGC	4 cut(s)	556, 647, 650, 698
AseI	ATTAAT	1 cut(s)	333
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	115, 833
AsuHPI	GGTGA	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	115
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	4 cut(s)	543, 634, 662, 685
BccI	CCATC	6 cut(s)	32, 68, 99, 374, 798, 866
BcgI	CGANNNNNNTGC	4 cut(s)	171, 205, 260, 294
BciT130I	CCWGG	5 cut(s)	23, 120, 693, 782, 822
BclI	TGATCA	1 cut(s)	669
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	2 cut(s)	648, 726
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	4 cut(s)	557, 648, 651, 699
BlpI	GCTNAGC	1 cut(s)	879
BlsI	GCNGC	4 cut(s)	558, 649, 652, 700
Bme1390I	CCNGG	5 cut(s)	23, 120, 693, 782, 822
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	115, 833
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	5 cut(s)	23, 120, 693, 782, 822
BmsI	GCATC	1 cut(s)	372
BpmI	CTGGAG	2 cut(s)	721, 798
Bpu10I	CCTNAGC	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	879
BpuEI	CTTGAG	1 cut(s)	842
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	118, 323, 453, 585
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 821
Bse1I	ACTGG	4 cut(s)	129, 545, 738, 815
Bse3DI	GCAATG	6 cut(s)	255, 317, 420, 551, 669, 855
BseBI	CCWGG	5 cut(s)	23, 120, 693, 782, 822
BseDI	CCNNGG	4 cut(s)	118, 323, 453, 585
BseGI	GGATG	6 cut(s)	60, 379, 388, 775, 809, 877
BseLI	CCNNNNNNNGG	2 cut(s)	124, 821
BseMI	GCAATG	6 cut(s)	255, 317, 420, 551, 669, 855
BseMII	CTCAG	3 cut(s)	69, 113, 222
BseNI	ACTGG	4 cut(s)	129, 545, 738, 815
BseXI	GCAGC	4 cut(s)	543, 634, 662, 685
Bsh1236I	CGCG	1 cut(s)	478
BshFI	GGCC	1 cut(s)	834
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	124, 821
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	834
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	6 cut(s)	16, 65, 223, 250, 607, 669
Bsp1720I	GCTNAGC	1 cut(s)	879
Bsp68I	TCGCGA	1 cut(s)	478
BspACI	CCGC	1 cut(s)	632
BspANI	GGCC	1 cut(s)	834
BspCNI	CTCAG	3 cut(s)	70, 112, 223
BspFNI	CGCG	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	117
BspMAI	CTGCAG	1 cut(s)	652
BspPI	GGATC	1 cut(s)	602
BsrDI	GCAATG	6 cut(s)	255, 317, 420, 551, 669, 855
BsrGI	TGTACA	1 cut(s)	292
BsrI	ACTGG	4 cut(s)	129, 545, 738, 815
BssECI	CCNNGG	4 cut(s)	118, 323, 453, 585
BssMI	GATC	6 cut(s)	16, 65, 223, 250, 607, 669
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	323, 453
Bst2UI	CCWGG	5 cut(s)	23, 120, 693, 782, 822
Bst4CI	ACNGT	3 cut(s)	580, 586, 844
Bst6I	CTCTTC	1 cut(s)	333
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	5 cut(s)	27, 78, 99, 231, 879
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	6 cut(s)	60, 379, 388, 775, 809, 877
BstFNI	CGCG	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	6 cut(s)	19, 68, 226, 253, 610, 672
BstMBI	GATC	6 cut(s)	16, 65, 223, 250, 607, 669
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 319, 659
BstNI	CCWGG	5 cut(s)	23, 120, 693, 782, 822
BstNSI	RCATGY	2 cut(s)	192, 792
BstSCI	CCNGG	5 cut(s)	21, 118, 691, 780, 820
BstSFI	CTRYAG	2 cut(s)	648, 726
BstUI	CGCG	1 cut(s)	478
BstV1I	GCAGC	4 cut(s)	543, 634, 662, 685
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	834
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	6 cut(s)	60, 379, 388, 775, 809, 877
BtuMI	TCGCGA	1 cut(s)	478
Cac8I	GCNNGC	1 cut(s)	190
CaiI	CAGNNNCTG	2 cut(s)	698, 821
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	115, 833
CsiI	ACCWGGT	1 cut(s)	691
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	4 cut(s)	175, 189, 296, 789
CviJI	RGCY	8 cut(s)	26, 47, 165, 313, 459, 569, 800, 834
CviKI_1	RGCY	8 cut(s)	26, 47, 165, 313, 459, 569, 800, 834
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	5 cut(s)	27, 78, 99, 231, 879
DpnI	GATC	6 cut(s)	18, 67, 225, 252, 609, 671
DpnII	GATC	6 cut(s)	16, 65, 223, 250, 607, 669
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	323, 453
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	5 cut(s)	21, 118, 691, 780, 820
EcoT14I	CCWWGG	2 cut(s)	323, 453
ErhI	CCWWGG	2 cut(s)	323, 453
FaeI	CATG	4 cut(s)	178, 192, 299, 792
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	4 cut(s)	174, 188, 295, 788
FbaI	TGATCA	1 cut(s)	669
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	4 cut(s)	557, 648, 651, 699
FokI	GGATG	6 cut(s)	47, 375, 386, 782, 816, 884
Fsp4HI	GCNGC	4 cut(s)	557, 648, 651, 699
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	4 cut(s)	557, 648, 651, 699
GsuI	CTGGAG	2 cut(s)	721, 798
HaeIII	GGCC	1 cut(s)	834
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	178, 192, 299, 792
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	3 cut(s)	155, 283, 734
HphI	GGTGA	1 cut(s)	11
Hpy166II	GTNNAC	2 cut(s)	217, 268
Hpy188I	TCNGA	4 cut(s)	16, 65, 70, 102
Hpy188III	TCNNGA	9 cut(s)	269, 287, 367, 464, 477, 605, 611, 626, 859
Hpy8I	GTNNAC	2 cut(s)	217, 268
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	145, 364, 499
HpyCH4III	ACNGT	3 cut(s)	580, 586, 844
HpyCH4V	TGCA	6 cut(s)	413, 447, 650, 701, 848, 895
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 319, 659
HpyF3I	CTNAG	5 cut(s)	27, 78, 99, 231, 879
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	178, 192, 299, 792
HspAI	GCGC	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	669
Kzo9I	GATC	6 cut(s)	16, 65, 223, 250, 607, 669
LmnI	GCTCC	1 cut(s)	144
Lsp1109I	GCAGC	4 cut(s)	543, 634, 662, 685
LweI	GCATC	1 cut(s)	372
MabI	ACCWGGT	1 cut(s)	691
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	527, 580
MalI	GATC	6 cut(s)	18, 67, 225, 252, 609, 671
MboI	GATC	6 cut(s)	16, 65, 223, 250, 607, 669
MboII	GAAGA	2 cut(s)	350, 534
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	4 cut(s)	33, 72, 272, 702
MlyI	GAGTC	2 cut(s)	149, 728
MmeI	TCCRAC	3 cut(s)	517, 621, 662
MnlI	CCTC	3 cut(s)	73, 402, 449
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	4 cut(s)	207, 275, 333, 350
MslI	CAYNNNNRTG	1 cut(s)	333
MspR9I	CCNGG	5 cut(s)	23, 120, 693, 782, 822
MvaI	CCWGG	5 cut(s)	23, 120, 693, 782, 822
MvnI	CGCG	1 cut(s)	478
MwoI	GCNNNNNNNGC	3 cut(s)	171, 319, 659
NdeII	GATC	6 cut(s)	16, 65, 223, 250, 607, 669
NlaIII	CATG	4 cut(s)	178, 192, 299, 792
NlaIV	GGNNCC	1 cut(s)	117
NruI	TCGCGA	1 cut(s)	478
NspI	RCATGY	2 cut(s)	192, 792
PaeI	GCATGC	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	283
PflMI	CCANNNNNTGG	1 cut(s)	821
PfoI	TCCNGGA	1 cut(s)	780
PkrI	GCNGC	4 cut(s)	558, 649, 652, 700
PleI	GAGTC	2 cut(s)	149, 728
PpsI	GAGTC	2 cut(s)	149, 728
PpuMI	RGGWCCY	1 cut(s)	115
PshBI	ATTAAT	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	5 cut(s)	21, 118, 691, 780, 820
PspGI	CCWGG	5 cut(s)	21, 118, 691, 780, 820
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	2 cut(s)	115, 833
PspPPI	RGGWCCY	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	652
PstNI	CAGNNNCTG	2 cut(s)	698, 821
PsuI	RGATCY	1 cut(s)	223
RruI	TCGCGA	1 cut(s)	478
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	4 cut(s)	207, 275, 333, 350
SatI	GCNGC	4 cut(s)	557, 648, 651, 699
Sau3AI	GATC	6 cut(s)	16, 65, 223, 250, 607, 669
Sau96I	GGNCC	2 cut(s)	115, 833
SchI	GAGTC	2 cut(s)	149, 728
ScrFI	CCNGG	5 cut(s)	23, 120, 693, 782, 822
SetI	ASST	8 cut(s)	117, 167, 315, 433, 697, 754, 798, 802
SexAI	ACCWGGT	1 cut(s)	691
SfaNI	GCATC	1 cut(s)	372
SfcI	CTRYAG	2 cut(s)	648, 726
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	4 cut(s)	33, 72, 272, 702
SsiI	CCGC	1 cut(s)	632
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	5 cut(s)	21, 118, 691, 780, 820
StyI	CCWWGG	2 cut(s)	323, 453
TaaI	ACNGT	3 cut(s)	580, 586, 844
TaqI	TCGA	2 cut(s)	216, 366
TasI	AATT	4 cut(s)	33, 72, 272, 702
TatI	WGTACW	1 cut(s)	292
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	4 cut(s)	207, 275, 333, 350
Tru9I	TTAA	4 cut(s)	207, 275, 333, 350
TseI	GCWGC	4 cut(s)	556, 647, 650, 698
TspDTI	ATGAA	6 cut(s)	191, 351, 377, 431, 540, 581
Van91I	CCANNNNNTGG	1 cut(s)	821
VpaK11BI	GGWCC	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	333
XceI	RCATGY	2 cut(s)	192, 792
XmiI	GTMKAC	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.