Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002860

Physical Location & Seq

Genomic Coordinates Reverse (-)

65968921 .. 65974275

Gene Structure 5355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG504800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTTCATGAGCCTCAGCACTAACGTGCATCGTAGAATTTTCGACTACTTCAGCATTTATTTCGTCTCTGTTTGGACTGAGGATTGCGCTAACATTCTCTGCAGAGGCCCAATCCATTACACTCAAACTGCGTCGTTTCGATCTGGACTGCCAAGTGTGTACAAAAGTACGTACTCCAAAGTCCAAAGCAAAAGAGCTTCGCTTCGGAGTTTGGACTGTTCGCTTCGCCGGAGCATCACGGCCAGTCTAACTTCAGCCATGGCGGATCCCTACCAGAGATACGCTGCTCCGCCGGAACGAGGTAGTGTAGCAAAGTCCAATTTTCCTGGTTACTTATCATCCGAAGCACCATCGTTGCTTTCGAATCACACTTTTGCCCCTACTGAATTGAGAAGCTATTCTTCGGATTTTCTGCTGAGAGATAAATCGTTGGGGTCTGTGCCGTATGGTGTAGATGATAGTAGAGTTCGTTCTGATTCGGGTGTTGGGGTGACAGCAGGGTCTAGCCTATATGATCCTTTGGAAGATACTTATCGAAGCCAGAGACGGGATATTGCGATGAGGTCAATGACGCCTGGGGTTTATGGTGTAGATGCTGTGAGTGTTAGTGTTCGTGCTGAACCTCGTCTTACTGTACAAGCTCAGACTTTATTCAACCAAAGACATGAGGTTGGAGCTGGCATTGGCTCAAGTGTTTCTACTGACTTCAGTAGAGAAAGGTCTGTGCCTTCGAGGAGTGGTGATGGTCTCCCAGTCCTGAAAGGGGAATCAAACATTTTGTTTGTGGATGGACTTCCCACTGACTGTACCAGAAGAGAAGTAGGCCATCTATTTCGTCCATTCATTGGCTTTAAAGAAATCAAAGTAGTTCACAAGGAGCCTCGACGCGTAAGTGCACTCATTTGCCTAGTTCTATCAAGTAATTTTGATAGACATCATAAAGGTTTAACACTGAGAGTCCACTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

322

Amino Acids

35.72

Weight (kDa)

9.55

Isoelectric Point (pI)

59.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31470 FvH4_2g31470
malus_domestica	MD08G1066100.v1.1 MD15G1055100.v1.1
prunus_persica	Prupe.1G408300_v2.0.a1
pyrus_communis	pycom08g05480 pycom15g05200
rosa_chinensis	RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331
rosa_laevigata	RLG00000010416
rosa_multiflora	Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750
rosa_rugosa	Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1
rosa_samantha	Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800
rosa_wichuraiana	Rw3G022150 Rw5G025820 Rw6G043740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	499
AccB7I	CCANNNNNTGG	1 cut(s)	845
AccII	CGCG	1 cut(s)	888
AciI	CCGC	2 cut(s)	263, 290
AclWI	GGATC	3 cut(s)	260, 273, 509
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	36
AcuI	CTGAAG	3 cut(s)	34, 237, 691
AcyI	GRCGYC	1 cut(s)	572
AfaI	GTAC	5 cut(s)	161, 169, 173, 636, 808
AfiI	CCNNNNNNNGG	4 cut(s)	299, 547, 763, 845
AflIII	ACRYGT	1 cut(s)	886
AgsI	TTSAA	1 cut(s)	655
AjnI	CCWGG	2 cut(s)	325, 574
AleI	CACNNNNGTG	1 cut(s)	23
AluBI	AGCT	4 cut(s)	197, 396, 641, 677
AluI	AGCT	4 cut(s)	197, 396, 641, 677
Alw21I	GWGCWC	1 cut(s)	898
Alw26I	GTCTC	3 cut(s)	70, 538, 752
Alw44I	GTGCAC	1 cut(s)	894
AlwI	GGATC	3 cut(s)	260, 273, 509
AoxI	GGCC	3 cut(s)	106, 240, 823
ApaLI	GTGCAC	1 cut(s)	894
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	397
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	502, 752
AsuII	TTCGAA	1 cut(s)	362
BaeGI	GKGCMC	1 cut(s)	898
BamHI	GGATCC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	898
BbvCI	CCTCAGC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	4 cut(s)	358, 737, 782, 834
BceAI	ACGGC	2 cut(s)	255, 427
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	2 cut(s)	327, 576
BcoDI	GTCTC	3 cut(s)	70, 538, 752
BfaI	CTAG	2 cut(s)	504, 908
BfmI	CTRYAG	1 cut(s)	100
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	2 cut(s)	327, 576
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	267, 879
BmrFI	CCNGG	2 cut(s)	327, 576
BmrI	ACTGGG	1 cut(s)	746
BmsI	GCATC	3 cut(s)	37, 243, 583
BmuI	ACTGGG	1 cut(s)	746
Bpu10I	CCTNAGC	1 cut(s)	14
Bpu14I	TTCGAA	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	673
BsaAI	YACGTR	1 cut(s)	171
BsaBI	GATNNNNATC	2 cut(s)	531, 933
BsaHI	GRCGYC	1 cut(s)	572
BsaI	GGTCTC	1 cut(s)	752
BsaJI	CCNNGG	2 cut(s)	258, 575
Bsc4I	CCNNNNNNNGG	4 cut(s)	299, 547, 763, 845
Bse1I	ACTGG	2 cut(s)	243, 752
Bse8I	GATNNNNATC	2 cut(s)	531, 933
BseBI	CCWGG	2 cut(s)	327, 576
BseDI	CCNNGG	2 cut(s)	258, 575
BseGI	GGATG	2 cut(s)	338, 793
BseJI	GATNNNNATC	2 cut(s)	531, 933
BseLI	CCNNNNNNNGG	4 cut(s)	299, 547, 763, 845
BseMII	CTCAG	5 cut(s)	28, 69, 407, 656, 944
BseNI	ACTGG	2 cut(s)	243, 752
BseRI	GAGGAG	1 cut(s)	748
BseSI	GKGCMC	1 cut(s)	898
BseXI	GCAGC	1 cut(s)	271
Bsh1236I	CGCG	1 cut(s)	888
BshFI	GGCC	3 cut(s)	108, 242, 825
BsiHKAI	GWGCWC	1 cut(s)	898
BsiSI	CCGG	2 cut(s)	229, 293
BslI	CCNNNNNNNGG	4 cut(s)	299, 547, 763, 845
BsmAI	GTCTC	3 cut(s)	70, 538, 752
BsmBI	CGTCTC	2 cut(s)	70, 538
BsnI	GGCC	3 cut(s)	108, 242, 825
Bso31I	GGTCTC	1 cut(s)	752
Bsp119I	TTCGAA	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	898
Bsp1407I	TGTACA	2 cut(s)	159, 634
Bsp143I	GATC	3 cut(s)	140, 265, 514
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	2 cut(s)	263, 290
BspANI	GGCC	3 cut(s)	108, 242, 825
BspCNI	CTCAG	5 cut(s)	27, 70, 408, 655, 945
BspFNI	CGCG	1 cut(s)	888
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	267, 879
BspMAI	CTGCAG	1 cut(s)	104
BspPI	GGATC	3 cut(s)	260, 273, 509
BspT104I	TTCGAA	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	752
BsrGI	TGTACA	2 cut(s)	159, 634
BsrI	ACTGG	2 cut(s)	243, 752
BssECI	CCNNGG	2 cut(s)	258, 575
BssMI	GATC	3 cut(s)	140, 265, 514
BssNI	GRCGYC	1 cut(s)	572
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	2 cut(s)	327, 576
Bst4CI	ACNGT	3 cut(s)	218, 634, 806
Bst6I	CTCTTC	1 cut(s)	808
BstACI	GRCGYC	1 cut(s)	572
BstAUI	TGTACA	2 cut(s)	159, 634
BstBAI	YACGTR	1 cut(s)	171
BstBI	TTCGAA	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	679
BstDEI	CTNAG	5 cut(s)	14, 78, 416, 642, 953
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	2 cut(s)	338, 793
BstFNI	CGCG	1 cut(s)	888
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	3 cut(s)	143, 268, 517
BstMAI	GTCTC	3 cut(s)	70, 538, 752
BstMBI	GATC	3 cut(s)	140, 265, 514
BstNI	CCWGG	2 cut(s)	327, 576
BstSCI	CCNGG	2 cut(s)	325, 574
BstSFI	CTRYAG	1 cut(s)	100
BstSLI	GKGCMC	1 cut(s)	898
BstSNI	TACGTA	1 cut(s)	171
BstUI	CGCG	1 cut(s)	888
BstV1I	GCAGC	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	3 cut(s)	108, 242, 825
BtgI	CCRYGG	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	572
BtsCI	GGATG	2 cut(s)	338, 793
BtsIMutI	CAGTG	2 cut(s)	798, 950
Cac8I	GCNNGC	1 cut(s)	679
CciI	TCATGA	1 cut(s)	6
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	107
CseI	GACGC	3 cut(s)	120, 580, 894
Csp6I	GTAC	5 cut(s)	160, 168, 172, 635, 807
CviAII	CATG	3 cut(s)	7, 259, 665
CviQI	GTAC	5 cut(s)	160, 168, 172, 635, 807
DdeI	CTNAG	5 cut(s)	14, 78, 416, 642, 953
DpnI	GATC	3 cut(s)	142, 267, 516
DpnII	GATC	3 cut(s)	140, 265, 514
DraI	TTTAAA	1 cut(s)	853
DrdI	GACNNNNNNGTC	1 cut(s)	499
DseDI	GACNNNNNNGTC	1 cut(s)	499
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	808
EarI	CTCTTC	1 cut(s)	808
EciI	GGCGGA	2 cut(s)	278, 279
Eco105I	TACGTA	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	752
Eco57I	CTGAAG	3 cut(s)	34, 237, 691
EcoRII	CCWGG	2 cut(s)	325, 574
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
Esp3I	CGTCTC	2 cut(s)	70, 538
FaeI	CATG	3 cut(s)	10, 262, 668
FaiI	YATR	9 cut(s)	8, 260, 447, 511, 513, 585, 666, 939, 967
FalI	AAGNNNNNCTT	2 cut(s)	385, 417
FatI	CATG	3 cut(s)	6, 258, 664
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	2 cut(s)	325, 800
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	504, 908
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	108, 242, 825
HapII	CCGG	2 cut(s)	229, 293
HgaI	GACGC	3 cut(s)	120, 580, 894
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	572
Hin1II	CATG	3 cut(s)	10, 262, 668
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	4 cut(s)	364, 476, 767, 957
HpaII	CCGG	2 cut(s)	229, 293
HphI	GGTGA	2 cut(s)	502, 752
Hpy166II	GTNNAC	4 cut(s)	160, 871, 896, 961
Hpy188I	TCNGA	5 cut(s)	207, 343, 406, 475, 645
Hpy188III	TCNNGA	3 cut(s)	7, 144, 757
Hpy8I	GTNNAC	4 cut(s)	160, 871, 896, 961
Hpy99I	CGWCG	2 cut(s)	136, 888
HpyAV	CCTTC	1 cut(s)	738
HpyCH4III	ACNGT	3 cut(s)	218, 634, 806
HpyCH4IV	ACGT	2 cut(s)	24, 170
HpyCH4V	TGCA	3 cut(s)	28, 102, 896
HpyF3I	CTNAG	5 cut(s)	14, 78, 416, 642, 953
HpySE526I	ACGT	2 cut(s)	24, 170
Hsp92I	GRCGYC	1 cut(s)	572
Hsp92II	CATG	3 cut(s)	10, 262, 668
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	3 cut(s)	140, 265, 514
LmnI	GCTCC	4 cut(s)	231, 292, 674, 877
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	3 cut(s)	37, 243, 583
MaeI	CTAG	2 cut(s)	504, 908
MaeII	ACGT	2 cut(s)	24, 170
MaeIII	GTNAC	2 cut(s)	329, 490
MalI	GATC	3 cut(s)	142, 267, 516
MboI	GATC	3 cut(s)	140, 265, 514
MboII	GAAGA	3 cut(s)	393, 536, 825
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	898
MluCI	AATT	4 cut(s)	36, 319, 386, 922
MluI	ACGCGT	1 cut(s)	886
MlyI	GAGTC	1 cut(s)	966
MmeI	TCCRAC	1 cut(s)	652
MnlI	CCTC	9 cut(s)	23, 73, 98, 293, 555, 633, 661, 726, 891
MroXI	GAANNNNTTC	1 cut(s)	397
MseI	TTAA	2 cut(s)	852, 947
MslI	CAYNNNNRTG	1 cut(s)	23
MspI	CCGG	2 cut(s)	229, 293
MspR9I	CCNGG	2 cut(s)	327, 576
MvaI	CCWGG	2 cut(s)	327, 576
MvnI	CGCG	1 cut(s)	888
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	3 cut(s)	140, 265, 514
NlaIII	CATG	3 cut(s)	10, 262, 668
NlaIV	GGNNCC	2 cut(s)	267, 879
NmuCI	GTSAC	1 cut(s)	490
NspV	TTCGAA	1 cut(s)	362
OliI	CACNNNNGTG	1 cut(s)	23
PagI	TCATGA	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	359
PdmI	GAANNNNTTC	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	364, 476, 767
PflMI	CCANNNNNTGG	1 cut(s)	845
PkrI	GCNGC	1 cut(s)	286
PleI	GAGTC	1 cut(s)	965
PpsI	GAGTC	1 cut(s)	965
Ppu21I	YACGTR	1 cut(s)	171
Psp6I	CCWGG	2 cut(s)	325, 574
PspGI	CCWGG	2 cut(s)	325, 574
PspN4I	GGNNCC	2 cut(s)	267, 879
PspPI	GGNCC	1 cut(s)	107
PsrI	GAACNNNNNNTAC	2 cut(s)	454, 486
PstI	CTGCAG	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	5 cut(s)	161, 169, 173, 636, 808
RsaNI	GTAC	5 cut(s)	160, 168, 172, 635, 807
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	852, 947
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	3 cut(s)	140, 265, 514
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	1 cut(s)	966
ScrFI	CCNGG	2 cut(s)	327, 576
SduI	GDGCHC	1 cut(s)	898
SfaNI	GCATC	3 cut(s)	37, 243, 583
SfcI	CTRYAG	1 cut(s)	100
SfuI	TTCGAA	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	688
SmoI	CTYRAG	1 cut(s)	688
SnaBI	TACGTA	1 cut(s)	171
Sse9I	AATT	4 cut(s)	36, 319, 386, 922
SsiI	CCGC	2 cut(s)	263, 290
SspMI	CTAG	2 cut(s)	504, 908
StyD4I	CCNGG	2 cut(s)	325, 574
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	3 cut(s)	218, 634, 806
TaiI	ACGT	2 cut(s)	27, 173
TaqI	TCGA	6 cut(s)	42, 139, 362, 535, 731, 883
TasI	AATT	4 cut(s)	36, 319, 386, 922
TatI	WGTACW	2 cut(s)	159, 634
TfiI	GAWTC	3 cut(s)	364, 476, 767
Tru1I	TTAA	2 cut(s)	852, 947
Tru9I	TTAA	2 cut(s)	852, 947
TscAI	CASTG	2 cut(s)	805, 957
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	1 cut(s)	832
TspRI	CASTG	2 cut(s)	805, 957
Van91I	CCANNNNNTGG	1 cut(s)	845
VneI	GTGCAC	1 cut(s)	894
XapI	RAATTY	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	397
XspI	CTAG	2 cut(s)	504, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.