Rorug03G0277800

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002860
Physical Location & Seq
Reverse (-)
27497554 .. 27503016
5463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0277800.1

Sequence Viewer

Length: 3636 bp
ATGGCTAAGAGGTCCGAGACCAAGTTACAGTTGAAAGCTGTACTAGGCTATAATATGGCTGCTGCTTCTTCTTGCTCTGATATCATCCCTCGGGAGAAGTATGATGTATTTCTTAGTTTCAGAGGCGAGGACACCCGGAATAGTTTTACCAGCCATCTTTATGAGGCTTTATGTCGGAACAAAATCCAAACTTACATAGATTACAAACTGGAGAGAGGAGATGAAATCTCACCTGCCCTTCTCAAAGCAATCAGCGAATCGAAGCTCTCAGTTATCATTTTCTCCAAAAACTATGCTTCTTCTACATGGTGCTTGGAAGAACTTGTGCACATACTCCAATGCAGAGATAAACAGTTTGTTATACCCATCTTCTACGGCGTAGATCCATCACATGTACGCAGAAAATTGGGGAGTTATGCAGATGCATTTGTTAAACACGAGGAACGTGTCGAGGACAATCCGGACAAGGTGCTCAGGTGGAGAGATGCTTTGACAACAGCAGCCAATATATCTGGGTTTGATTCCCAAACTATTAGGGTCGAGTCTGAATTAATTAAGACTGTGGTCGAAGACATTTTGGAAAAATTGAACCGCGAATCGTCAAGTTGTTTAGAGGGCAAGGTTGGAATCAAAAAAAAGATTCAACAAGTTGAATCGTTATTATGCCTTCACTCACTGGATGTCCAGACTCTAGGTATTTGGGGTATGGGTGGTATCGGTAAGACCACCATTGCTGAGGTTGTATTTGGTCGTCTCTCTTCTCAATTCGAAGCTTGCTGCTTTATTGCAAATGTTAGCGAATCAGAAGCGAAACATGTACTAAATGATTTGCGGAATCAGATTCTTTGTGAACTACTGCAGAAAGAAAATCTACGTATGGCCACTTCATATACTATATCAAATTCTGAACGAGAGAGGCTTCGCCGTACAAAGGCCCTCATTGTTCTTGATGGTGTGAGTGCTTTCCGCCAAATACAAGTTTTAGTTGGAGGTGACAATATGTTTGGCCCTGGAAGTAGAATCCTTGTAACAACCAGAAATAAACGCATATTTGGGAACCTTGTTAATGAAGATAAGATATATGAGGTTAAGGAATTAGACGTTGATGAAGCTCTTGAGCTCTTTTATTTGAGAGCTAATGTCTCTTTCCCAGGTGATTATACGACTTTTGCAGAACAGGTGGTAGATTATGCTAGGGGCAATCCATTGGCTCTTACAATATTGGGCTCCGTATTCTCTCATTGCAGGAGCAAAGAAGACTGGGAAAGTGAATTAGATAAAGTGAAAAAATTTCCCAGCCAAGATATCCAGAATGTGTTGAGGTTAAGTTATGATGGATTAGAAGAAAATGAGAAGGATATATTTCTCGATATCGCATGTTACTATAAAGGAGAGCGTATAGATTATGCAAACAGAATGTTACATGCCTCTGGTTTCTGTGCGAATGCAGGGATAAGACTTCTCATTGATATGTCTCTCATATCCGTGGATAAATGTTCCAGATTCATTAAGATGCATGATTTGATACAAGAAATGGGTCATAAAATTGTTCGTGATCAAGGTGTTAAGAATCCCGGGAAACGCAGTAGATTGTGGATTGCTAATGATGTCTGTTATGTATTGCAAAATAATAGGGGAACTGGAGCAATTGAATGCTTAGTCATGAGCCTGGACCACATTTCAGATCTTGACATAAAACCTTCAGCCTTCAAACAGATGCATAATCTAAGATTACTTAAGTTACATTTTGAGCGTTACTGCGACCCAATGTCATGCGTCAACAAAGTTCACCTTCCTCGAGGTCTCGAGTGTCTTCCTCAAGCCCTTAGAATTATGCAGTGGGATGGCTACCCTTTGAATTCTCTGCCATCAAAGTTTTGTGCAGAAAAGCTTGTTGAGCTTCGTATGCGGAACAGCCGACTTCAGCGACTTTGGAATGAAGGCGTGAAGATCAATCTTGGGAGCTTAAAACATATCGATCTTAGTGACTCCCAGCACCTGGCTGATGTTTCAGCTCTGATTGAGAGCCCAAATCTCGAGACAATTATTCTTGAATGTTGTACAAGTTTGGTTCAACTTCCTTCTTTTCAGCATCTTGCCAAGCTTACTGATCTCAATCTGTACAGCTGCTTCAATCTCAAAATTCTCCCAGAGATGCCAGGCAATCTGGAAAGCTTATACTTGGATGGTACTGCAATAGAAGAATTGCCTTCATCAATTTGGTGTCTCGAGAAGCTTTATAGATTGGGTCTTGAAGAATGTGAAGAGCTTAAGAATCTTCCAAGCACCCCTTGTAGGCTGAATTCGCTCCGAATTCTTAGTCTAGAGGGCTGCCTCTCTCTTGAGTGTTTGCCTGTCGAGCTCCCTTCTGGGCTGGAATACCTTTACTTGAGCAGTTGCGAGAGTCTTGGGTCTTTGCCTGTCGAGCTCCCTTCTGGGCTAAAGTCCCTGAGCTTGAGGAATTGCAAGAGTCTTGGGTCTTTGCCTGTCGAGCTCCCTTCTGGGCTGGAACACCTTTACTTGAGCAGTTGCGAGAGTCTTGGGTCTTTGCCTGTCGAGCTCCCTTCTGGGCTAAAGTCCCTGAGCTTGAGGAATTGCAAGAGTCTTGGGTCTTTGCCTGTCGAGCTCCCTTCTGGGCTGAAGGAACTGATCTTGAGCGGTTGCGAGAGTCTTGGGTCTTTGCCTGTCAAGCTACCTTCTGGGCTGAAGAAACTGGACTTGAGAGATTGTGTGAGTCTTGGGTCTTTGCCCGTGGAGCTCCCCTCTGTGCTGGAGAACCTGTATTTGAGCAATTGCAAGAGTCTTGGGTCTTTACCGAAGCTGCCATGGCTTCTAAACGATTTACAAGCAGATGGCTGCATGTCACTAGAGAGGATTGCCCCGGTACAAGGTTGGGATCAATATTTCAACCGTTTAAAAGAATTCAGGATTGAGCATTTCGAGCAGCATATATTTATAAATTGCCTGAAATTGGATCAGAGTGCAAGGAGCAACATAATGGCTGATGCACAGCTTCGAGTCATGCGAATTGCATATGTCCCAGGCGAAATTACAATTGTTTGTCCGGGAAATAAAATTCCAAAGTGGTTGAGGTATCAAAGTGAGGGGTGTTCGATAAATATCAAGCTTCCTCCTCATTGGCATCGTGAAGGCTTCATGGGTTTCGCTCTATGCATTGTGGTTGCATTCAACAACTATACGCCACCCGATATTGGGACTTCCTTCTTGAGTTGTGAAACCCATCACAAAACTAATAATTGTCAAGAACTTCGTCGGAAACCCATCACAAAACTACCAGATAATCTCAATTCAGATCATGTGTTCGTGTGGTATTTCCGCCCTGAATATGTTGTATTAGAAAGTGCAATCAATCGCGAGGATTGGGTAAAAGCATCCGAGGCCTCTTTTGACTTCATATTGTACAATATACTGAGAAGCACCGGATCTTGCCAGAAAATAAATCCTTTTGCCCCGTTCACTGTGAGGGTGAAAAGGTGTGGAGTCTCCTTGTTGTATGCTCAAGATCTTGAAAACTTCTTTGGAGGCATTGATGAAGATGTTGTTATGGAACCAAAACAAGTAGTTGAAAAAGAAGATATCATCATCAAAACTAAAGAGACGAGGCGGCCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

1211

Amino Acids

136.87

Weight (kDa)

6.21

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 33 - 202 1.3e-57 TIR domain
TIR_2 PF13676 36 - 132 4.4e-13 TIR domain
NB-ARC PF00931 212 - 377 2.1e-17 NB-ARC domain
WHD_ROQ1 PF23282 448 - 520 1.2e-22 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 684 - 978 6.4e-07 Leucine-rich repeat region
C-JID PF20160 1021 - 1177 5.3e-20 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2957
AarI CACCTGC 1 cut(s) 241
AbsI CCTCGAGG 1 cut(s) 1797
Acc36I ACCTGC 1 cut(s) 241
AccB7I CCANNNNNTGG 1 cut(s) 1999
AccBSI CCGCTC 1 cut(s) 2658
AccII CGCG 2 cut(s) 594, 3375
AccIII TCCGGA 1 cut(s) 460
AciI CCGC 7 cut(s) 592, 832, 967, 1909, 2658, 3337, 3625
AclWI GGATC 4 cut(s) 377, 2904, 2982, 3451
AcoI YGGCCR 2 cut(s) 879, 3626
AcsI RAATTY 8 cut(s) 901, 1289, 1858, 2142, 2302, 2313, 2921, 3075
AcuI CTGAAG 4 cut(s) 1686, 1907, 2660, 2726
AfaI GTAC 9 cut(s) 42, 396, 819, 928, 2062, 2123, 2191, 2886, 3422
AfiI CCNNNNNNNGG 7 cut(s) 931, 1999, 2295, 2888, 2971, 3212, 3213
AflII CTTAAG 2 cut(s) 1736, 2270
AflIII ACRYGT 3 cut(s) 391, 445, 814
AhdI GACNNNNNGTC 1 cut(s) 1768
AjnI CCWGG 6 cut(s) 1009, 1150, 1668, 1998, 2158, 3040
AjuI GAANNNNNNNTTGG 2 cut(s) 3522, 3554
Alw21I GWGCWC 9 cut(s) 330, 474, 1122, 2364, 2430, 2496, 2562, 2628, 2760
Alw26I GTCTC 9 cut(s) 11, 758, 1147, 1479, 1808, 2033, 2231, 3508, 3611
Alw44I GTGCAC 1 cut(s) 326
AlwI GGATC 4 cut(s) 377, 2904, 2982, 3451
AlwNI CAGNNNCTG 1 cut(s) 1999
Ama87I CYCGRG 6 cut(s) 90, 1574, 1797, 1805, 2036, 2228
Aor13HI TCCGGA 1 cut(s) 460
AoxI GGCC 5 cut(s) 879, 933, 1006, 3399, 3626
ApaLI GTGCAC 1 cut(s) 326
ApeKI GCWGC 9 cut(s) 59, 62, 500, 777, 2127, 2331, 2821, 2856, 2944
ApoI RAATTY 8 cut(s) 901, 1289, 1858, 2142, 2302, 2313, 2921, 3075
ArsI GACNNNNNNTTYG 4 cut(s) 986, 1018, 2305, 2337
AseI ATTAAT 1 cut(s) 551
AspS9I GGNCC 4 cut(s) 12, 934, 1007, 1672
AsuC2I CCSGG 5 cut(s) 136, 1575, 1576, 2882, 3066
AsuHPI GGTGA 5 cut(s) 222, 1004, 1166, 1781, 3499
AsuII TTCGAA 1 cut(s) 768
AvaI CYCGRG 6 cut(s) 90, 1574, 1797, 1805, 2036, 2228
AvaII GGWCC 2 cut(s) 12, 1672
BaeGI GKGCMC 1 cut(s) 330
BalI TGGCCA 1 cut(s) 881
BanII GRGCYC 9 cut(s) 1122, 1229, 2030, 2364, 2430, 2496, 2562, 2628, 2760
BarI GAAGNNNNNNTAC 4 cut(s) 868, 900, 2114, 2146
BauI CACGAG 1 cut(s) 437
BbsI GAAGAC 3 cut(s) 576, 1263, 1805
Bbv12I GWGCWC 9 cut(s) 330, 474, 1122, 2364, 2430, 2496, 2562, 2628, 2760
BbvCI CCTCAGC 1 cut(s) 735
BbvI GCAGC 9 cut(s) 46, 49, 512, 764, 2114, 2318, 2808, 2843, 2956
BceAI ACGGC 2 cut(s) 391, 909
BciT130I CCWGG 6 cut(s) 1011, 1152, 1670, 2000, 2160, 3042
BclI TGATCA 1 cut(s) 1555
BcnI CCSGG 5 cut(s) 136, 1575, 1576, 2882, 3066
BcoDI GTCTC 9 cut(s) 11, 758, 1147, 1479, 1808, 2033, 2231, 3508, 3611
BfaI CTAG 5 cut(s) 44, 692, 1194, 2324, 2867
BfmI CTRYAG 1 cut(s) 857
BfrI CTTAAG 2 cut(s) 1736, 2270
BfuAI ACCTGC 1 cut(s) 241
BglII AGATCT 2 cut(s) 1684, 3523
Bme18I GGWCC 2 cut(s) 12, 1672
BmeRI GACNNNNNGTC 1 cut(s) 1768
BmeT110I CYCGRG 6 cut(s) 90, 1574, 1797, 1805, 2036, 2228
BmgT120I GGNCC 4 cut(s) 12, 934, 1007, 1672
BmiI GGNNCC 3 cut(s) 1058, 1228, 3570
BmrI ACTGGG 1 cut(s) 1270
BmsI GCATC 9 cut(s) 412, 475, 1503, 1707, 2101, 2145, 2995, 3151, 3401
BmuI ACTGGG 1 cut(s) 1270
BoxI GACNNNNGTC 1 cut(s) 563
BpiI GAAGAC 3 cut(s) 576, 1263, 1805
BplI GAGNNNNNCTC 2 cut(s) 2747, 2779
BpmI CTGGAG 3 cut(s) 230, 1662, 2792
Bpu10I CCTNAGC 4 cut(s) 473, 735, 2450, 2582
Bpu14I TTCGAA 1 cut(s) 768
BpuMI CCSGG 5 cut(s) 136, 1575, 1576, 2882, 3066
Bsa29I ATCGAT 1 cut(s) 1977
BsaAI YACGTR 1 cut(s) 875
BsaBI GATNNNNATC 2 cut(s) 2115, 3119
BsaI GGTCTC 2 cut(s) 11, 1808
BsaWI WCCGGW 2 cut(s) 460, 3440
BsaXI ACNNNNNCTCC 2 cut(s) 2765, 2795
Bsc4I CCNNNNNNNGG 7 cut(s) 931, 1999, 2295, 2888, 2971, 3212, 3213
Bse1I ACTGG 6 cut(s) 213, 681, 1265, 1645, 2718, 3629
Bse3DI GCAATG 2 cut(s) 729, 1240
Bse8I GATNNNNATC 2 cut(s) 2115, 3119
BseAI TCCGGA 1 cut(s) 460
BseBI CCWGG 6 cut(s) 1011, 1152, 1670, 2000, 2160, 3042
BseCI ATCGAT 1 cut(s) 1977
BseGI GGATG 5 cut(s) 84, 685, 1849, 2191, 3392
BseJI GATNNNNATC 2 cut(s) 2115, 3119
BseLI CCNNNNNNNGG 7 cut(s) 931, 1999, 2295, 2888, 2971, 3212, 3213
BseMI GCAATG 2 cut(s) 729, 1240
BseMII CTCAG 6 cut(s) 282, 487, 726, 2441, 2573, 3422
BseNI ACTGG 6 cut(s) 213, 681, 1265, 1645, 2718, 3629
BseRI GAGGAG 2 cut(s) 231, 3123
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 9 cut(s) 46, 49, 512, 764, 2114, 2318, 2808, 2843, 2956
BseYI CCCAGC 2 cut(s) 1295, 1992
BsgI GTGCAG 1 cut(s) 1902
Bsh1236I CGCG 2 cut(s) 594, 3375
BshFI GGCC 5 cut(s) 881, 935, 1008, 3401, 3628
BshVI ATCGAT 1 cut(s) 1977
BsiHKAI GWGCWC 9 cut(s) 330, 474, 1122, 2364, 2430, 2496, 2562, 2628, 2760
BsiHKCI CYCGRG 6 cut(s) 90, 1574, 1797, 1805, 2036, 2228
BsiSI CCGG 6 cut(s) 136, 461, 1575, 2882, 3065, 3441
BslFI GGGAC 4 cut(s) 2431, 2563, 3023, 3229
BslI CCNNNNNNNGG 7 cut(s) 931, 1999, 2295, 2888, 2971, 3212, 3213
BsmAI GTCTC 9 cut(s) 11, 758, 1147, 1479, 1808, 2033, 2231, 3508, 3611
BsmBI CGTCTC 2 cut(s) 758, 3611
BsmFI GGGAC 4 cut(s) 2431, 2563, 3023, 3229
BsmI GAATGC 3 cut(s) 1450, 1658, 3185
BsnI GGCC 5 cut(s) 881, 935, 1008, 3401, 3628
Bso31I GGTCTC 2 cut(s) 11, 1808
BsoBI CYCGRG 6 cut(s) 90, 1574, 1797, 1805, 2036, 2228
Bsp119I TTCGAA 1 cut(s) 768
Bsp13I TCCGGA 1 cut(s) 460
Bsp1407I TGTACA 3 cut(s) 2060, 2121, 3420
Bsp19I CCATGG 1 cut(s) 2825
Bsp68I TCGCGA 1 cut(s) 3375
BspACI CCGC 7 cut(s) 592, 832, 967, 1909, 2658, 3337, 3625
BspANI GGCC 5 cut(s) 881, 935, 1008, 3401, 3628
BspCNI CTCAG 6 cut(s) 281, 486, 727, 2442, 2574, 3423
BspDI ATCGAT 1 cut(s) 1977
BspEI TCCGGA 1 cut(s) 460
BspFNI CGCG 2 cut(s) 594, 3375
BspHI TCATGA 1 cut(s) 1662
BspLI GGNNCC 3 cut(s) 1058, 1228, 3570
BspMAI CTGCAG 1 cut(s) 861
BspMI ACCTGC 1 cut(s) 241
BspPI GGATC 4 cut(s) 377, 2904, 2982, 3451
BspQI GCTCTTC 1 cut(s) 2259
BspT104I TTCGAA 1 cut(s) 768
BspTI CTTAAG 2 cut(s) 1736, 2270
BspTNI GGTCTC 2 cut(s) 11, 1808
BsrBI CCGCTC 1 cut(s) 2658
BsrDI GCAATG 2 cut(s) 729, 1240
BsrGI TGTACA 3 cut(s) 2060, 2121, 3420
BsrI ACTGG 6 cut(s) 213, 681, 1265, 1645, 2718, 3629
BssSI CACGAG 1 cut(s) 437
BssT1I CCWWGG 1 cut(s) 2825
Bst2BI CACGAG 1 cut(s) 437
Bst2UI CCWGG 6 cut(s) 1011, 1152, 1670, 2000, 2160, 3042
Bst4CI ACNGT 5 cut(s) 30, 354, 562, 2912, 3481
Bst6I CTCTTC 2 cut(s) 763, 2259
BstAFI CTTAAG 2 cut(s) 1736, 2270
BstAUI TGTACA 3 cut(s) 2060, 2121, 3420
BstBAI YACGTR 1 cut(s) 875
BstBI TTCGAA 1 cut(s) 768
BstC8I GCNNGC 1 cut(s) 775
BstDSI CCRYGG 3 cut(s) 1485, 2751, 2825
BstF5I GGATG 5 cut(s) 84, 685, 1849, 2191, 3392
BstFNI CGCG 2 cut(s) 594, 3375
BstMAI GTCTC 9 cut(s) 11, 758, 1147, 1479, 1808, 2033, 2231, 3508, 3611
BstNI CCWGG 6 cut(s) 1011, 1152, 1670, 2000, 2160, 3042
BstNSI RCATGY 5 cut(s) 395, 818, 1380, 1427, 2863
BstPAI GACNNNNGTC 1 cut(s) 563
BstSFI CTRYAG 1 cut(s) 857
BstSLI GKGCMC 1 cut(s) 330
BstSNI TACGTA 1 cut(s) 875
BstUI CGCG 2 cut(s) 594, 3375
BstV1I GCAGC 9 cut(s) 46, 49, 512, 764, 2114, 2318, 2808, 2843, 2956
BstV2I GAAGAC 3 cut(s) 576, 1263, 1805
BstX2I RGATCY 4 cut(s) 382, 1684, 3443, 3523
BstYI RGATCY 4 cut(s) 382, 1684, 3443, 3523
Bsu15I ATCGAT 1 cut(s) 1977
BsuRI GGCC 5 cut(s) 881, 935, 1008, 3401, 3628
BsuTUI ATCGAT 1 cut(s) 1977
BtgI CCRYGG 3 cut(s) 1485, 2751, 2825
BtsCI GGATG 5 cut(s) 84, 685, 1849, 2191, 3392
BtsI GCAGTG 1 cut(s) 1844
BtsIMutI CAGTG 3 cut(s) 674, 1844, 3477
BtuMI TCGCGA 1 cut(s) 3375
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 775
CaiI CAGNNNCTG 1 cut(s) 1999
CciI TCATGA 1 cut(s) 1662
Cfr13I GGNCC 4 cut(s) 12, 934, 1007, 1672
Cfr9I CCCGGG 1 cut(s) 1574
ClaI ATCGAT 1 cut(s) 1977
CseI GACGC 1 cut(s) 1765
Csp6I GTAC 9 cut(s) 41, 395, 818, 927, 2061, 2122, 2190, 2885, 3421
CviQI GTAC 9 cut(s) 41, 395, 818, 927, 2061, 2122, 2190, 2885, 3421
DraI TTTAAA 1 cut(s) 2916
DriI GACNNNNNGTC 1 cut(s) 1768
EaeI YGGCCR 2 cut(s) 879, 3626
Eam1104I CTCTTC 2 cut(s) 763, 2259
Eam1105I GACNNNNNGTC 1 cut(s) 1768
EarI CTCTTC 2 cut(s) 763, 2259
EciI GGCGGA 2 cut(s) 956, 3326
Ecl136II GAGCTC 7 cut(s) 1120, 2362, 2428, 2494, 2560, 2626, 2758
Eco105I TACGTA 1 cut(s) 875
Eco130I CCWWGG 1 cut(s) 2825
Eco147I AGGCCT 1 cut(s) 3401
Eco24I GRGCYC 9 cut(s) 1122, 1229, 2030, 2364, 2430, 2496, 2562, 2628, 2760
Eco31I GGTCTC 2 cut(s) 11, 1808
Eco32I GATATC 4 cut(s) 82, 1306, 1372, 3598
Eco47I GGWCC 2 cut(s) 12, 1672
Eco53kI GAGCTC 7 cut(s) 1120, 2362, 2428, 2494, 2560, 2626, 2758
Eco57I CTGAAG 4 cut(s) 1686, 1907, 2660, 2726
Eco88I CYCGRG 6 cut(s) 90, 1574, 1797, 1805, 2036, 2228
EcoICRI GAGCTC 7 cut(s) 1120, 2362, 2428, 2494, 2560, 2626, 2758
EcoO109I RGGNCCY 1 cut(s) 934
EcoRI GAATTC 4 cut(s) 1858, 2302, 2313, 2921
EcoRII CCWGG 6 cut(s) 1009, 1150, 1668, 1998, 2158, 3040
EcoRV GATATC 4 cut(s) 82, 1306, 1372, 3598
EcoT14I CCWWGG 1 cut(s) 2825
EcoT22I ATGCAT 4 cut(s) 427, 1518, 1722, 3176
EcoT38I GRGCYC 9 cut(s) 1122, 1229, 2030, 2364, 2430, 2496, 2562, 2628, 2760
ErhI CCWWGG 1 cut(s) 2825
Esp3I CGTCTC 2 cut(s) 758, 3611
FalI AAGNNNNNCTT 4 cut(s) 1776, 1808, 2275, 2307
FaqI GGGAC 4 cut(s) 2431, 2563, 3023, 3229
FauNDI CATATG 1 cut(s) 3034
FbaI TGATCA 1 cut(s) 1555
FokI GGATG 5 cut(s) 71, 692, 1856, 2198, 3379
FriOI GRGCYC 9 cut(s) 1122, 1229, 2030, 2364, 2430, 2496, 2562, 2628, 2760
FspBI CTAG 5 cut(s) 44, 692, 1194, 2324, 2867
GsaI CCCAGC 2 cut(s) 1299, 1996
GsuI CTGGAG 3 cut(s) 230, 1662, 2792
HaeIII GGCC 5 cut(s) 881, 935, 1008, 3401, 3628
HapII CCGG 6 cut(s) 136, 461, 1575, 2882, 3065, 3441
HgaI GACGC 1 cut(s) 1765
HincII GTYRAC 1 cut(s) 1780
HindII GTYRAC 1 cut(s) 1780
HindIII AAGCTT 6 cut(s) 771, 1889, 2102, 2173, 2234, 3125
HpaII CCGG 6 cut(s) 136, 461, 1575, 2882, 3065, 3441
HphI GGTGA 5 cut(s) 222, 1004, 1166, 1781, 3499
Hpy166II GTNNAC 5 cut(s) 328, 851, 1780, 1789, 3477
Hpy8I GTNNAC 5 cut(s) 328, 851, 1780, 1789, 3477
Hpy99I CGWCG 1 cut(s) 3276
HpyCH4III ACNGT 5 cut(s) 30, 354, 562, 2912, 3481
HpyCH4IV ACGT 3 cut(s) 445, 874, 1101
HpySE526I ACGT 3 cut(s) 445, 874, 1101
Kpn2I TCCGGA 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 1555
LguI GCTCTTC 1 cut(s) 2259
Lsp1109I GCAGC 9 cut(s) 46, 49, 512, 764, 2114, 2318, 2808, 2843, 2956
LweI GCATC 9 cut(s) 412, 475, 1503, 1707, 2101, 2145, 2995, 3151, 3401
MaeI CTAG 5 cut(s) 44, 692, 1194, 2324, 2867
MaeII ACGT 3 cut(s) 445, 874, 1101
MaeIII GTNAC 9 cut(s) 24, 992, 1027, 1379, 1419, 1740, 1754, 1985, 2862
MbiI CCGCTC 1 cut(s) 2658
MfeI CAATTG 3 cut(s) 1647, 2791, 3054
MflI RGATCY 4 cut(s) 382, 1684, 3443, 3523
MlsI TGGCCA 1 cut(s) 881
MluNI TGGCCA 1 cut(s) 881
MmeI TCCRAC 4 cut(s) 155, 604, 967, 3254
Mox20I TGGCCA 1 cut(s) 881
Mph1103I ATGCAT 4 cut(s) 427, 1518, 1722, 3176
MroI TCCGGA 1 cut(s) 460
MscI TGGCCA 1 cut(s) 881
MslI CAYNNNNRTG 4 cut(s) 159, 1469, 1484, 1511
Msp20I TGGCCA 1 cut(s) 881
MspA1I CMGCKG 1 cut(s) 2127
MspCI CTTAAG 2 cut(s) 1736, 2270
MspI CCGG 6 cut(s) 136, 461, 1575, 2882, 3065, 3441
MunI CAATTG 3 cut(s) 1647, 2791, 3054
Mva1269I GAATGC 3 cut(s) 1450, 1658, 3185
MvaI CCWGG 6 cut(s) 1011, 1152, 1670, 2000, 2160, 3042
MvnI CGCG 2 cut(s) 594, 3375
NciI CCSGG 5 cut(s) 136, 1575, 1576, 2882, 3066
NcoI CCATGG 1 cut(s) 2825
NdeI CATATG 1 cut(s) 3034
NlaIV GGNNCC 3 cut(s) 1058, 1228, 3570
NmuCI GTSAC 3 cut(s) 992, 1985, 2862
NruI TCGCGA 1 cut(s) 3375
NsiI ATGCAT 4 cut(s) 427, 1518, 1722, 3176
NspI RCATGY 5 cut(s) 395, 818, 1380, 1427, 2863
NspV TTCGAA 1 cut(s) 768
PacI TTAATTAA 1 cut(s) 555
PaeR7I CTCGAG 4 cut(s) 1797, 1805, 2036, 2228
PagI TCATGA 1 cut(s) 1662
PaqCI CACCTGC 1 cut(s) 241
PceI AGGCCT 1 cut(s) 3401
PciI ACATGT 2 cut(s) 391, 814
PciSI GCTCTTC 1 cut(s) 2259
PcsI WCGNNNNNNNCGW 1 cut(s) 3022
PctI GAATGC 3 cut(s) 1450, 1658, 3185
PflMI CCANNNNNTGG 1 cut(s) 1999
PfoI TCCNGGA 1 cut(s) 3064
Ppu21I YACGTR 1 cut(s) 875
PscI ACATGT 2 cut(s) 391, 814
PshAI GACNNNNGTC 1 cut(s) 563
PshBI ATTAAT 1 cut(s) 551
PsiI TTATAA 1 cut(s) 2957
Psp124BI GAGCTC 7 cut(s) 1122, 2364, 2430, 2496, 2562, 2628, 2760
Psp6I CCWGG 6 cut(s) 1009, 1150, 1668, 1998, 2158, 3040
PspFI CCCAGC 2 cut(s) 1295, 1992
PspGI CCWGG 6 cut(s) 1009, 1150, 1668, 1998, 2158, 3040
PspN4I GGNNCC 3 cut(s) 1058, 1228, 3570
PspPI GGNCC 4 cut(s) 12, 934, 1007, 1672
PspXI VCTCGAGB 1 cut(s) 1797
PstI CTGCAG 1 cut(s) 861
PstNI CAGNNNCTG 1 cut(s) 1999
PsuI RGATCY 4 cut(s) 382, 1684, 3443, 3523
PvuII CAGCTG 1 cut(s) 2127
RruI TCGCGA 1 cut(s) 3375
RsaI GTAC 9 cut(s) 42, 396, 819, 928, 2062, 2123, 2191, 2886, 3422
RsaNI GTAC 9 cut(s) 41, 395, 818, 927, 2061, 2122, 2190, 2885, 3421
RseI CAYNNNNRTG 4 cut(s) 159, 1469, 1484, 1511
SacI GAGCTC 7 cut(s) 1122, 2364, 2430, 2496, 2562, 2628, 2760
SapI GCTCTTC 1 cut(s) 2259
Sau96I GGNCC 4 cut(s) 12, 934, 1007, 1672
SfaNI GCATC 9 cut(s) 412, 475, 1503, 1707, 2101, 2145, 2995, 3151, 3401
SfcI CTRYAG 1 cut(s) 857
Sfr274I CTCGAG 4 cut(s) 1797, 1805, 2036, 2228
SfuI TTCGAA 1 cut(s) 768
SinI GGWCC 2 cut(s) 12, 1672
SlaI CTCGAG 4 cut(s) 1797, 1805, 2036, 2228
SmaI CCCGGG 1 cut(s) 1576
SmiMI CAYNNNNRTG 4 cut(s) 159, 1469, 1484, 1511
SnaBI TACGTA 1 cut(s) 875
SseBI AGGCCT 1 cut(s) 3401
SsiI CCGC 7 cut(s) 592, 832, 967, 1909, 2658, 3337, 3625
SspI AATATT 2 cut(s) 1221, 2903
SspMI CTAG 5 cut(s) 44, 692, 1194, 2324, 2867
SstI GAGCTC 7 cut(s) 1122, 2364, 2430, 2496, 2562, 2628, 2760
StuI AGGCCT 1 cut(s) 3401
StyI CCWWGG 1 cut(s) 2825
TaaI ACNGT 5 cut(s) 30, 354, 562, 2912, 3481
TaiI ACGT 3 cut(s) 448, 877, 1104
TatI WGTACW 5 cut(s) 40, 817, 2060, 2121, 3420
TauI GCSGC 1 cut(s) 3628
TscAI CASTG 3 cut(s) 681, 1844, 3484
TseFI GTSAC 3 cut(s) 992, 1985, 2862
TseI GCWGC 9 cut(s) 59, 62, 500, 777, 2127, 2331, 2821, 2856, 2944
Tsp45I GTSAC 3 cut(s) 992, 1985, 2862
TspGWI ACGGA 2 cut(s) 1219, 1474
TspMI CCCGGG 1 cut(s) 1574
TspRI CASTG 3 cut(s) 681, 1844, 3484
Van91I CCANNNNNTGG 1 cut(s) 1999
Vha464I CTTAAG 2 cut(s) 1736, 2270
VneI GTGCAC 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 12, 1672
VspI ATTAAT 1 cut(s) 551
XapI RAATTY 8 cut(s) 901, 1289, 1858, 2142, 2302, 2313, 2921, 3075
XbaI TCTAGA 1 cut(s) 2323
XceI RCATGY 5 cut(s) 395, 818, 1380, 1427, 2863
XhoI CTCGAG 4 cut(s) 1797, 1805, 2036, 2228
XmaI CCCGGG 1 cut(s) 1574
XspI CTAG 5 cut(s) 44, 692, 1194, 2324, 2867
Zsp2I ATGCAT 4 cut(s) 427, 1518, 1722, 3176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.