Rorug04G0226900

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002860
Physical Location & Seq
Reverse (-)
39021714 .. 39029350
7637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0226900.1

Sequence Viewer

Length: 3138 bp
ATGGCTCAGCTGGACAGCCTCGACCTCATTACCAAGACCAAGTCTCTGATCTCTGCCCTCAACCTCGTCTCCCGCGACCTCCCTCTCCCTCCTCACCTCTTCGACCTCGTTTCCTCCATCTACCACGCCCCCCAGGCTCCCAATCCCGACCCTGCCGACGGTTTGGATGAAGGTGAGAGCTGTGGAGGGGATGATTTGTTGGGAGACCTTGAAGATGCGCTTTTGAACCAACGTCACAAGTGCAGTTCCGGTGTTGGATTAATTGAATCCGGGGAGAAGCGTTTCCAAAGCCACCTTCAGCATAGACTGGCCCAGCTTGAAGAACTACCTTCAAGTAGAGGAGAGGAGTTGCAGACCAAGTGCTTGCTTGAATTCTATGGGCTAAAGCTTGCAGAATTGCAAAACAAGGTGCGTTCTGATGTGAGTTCAGAATACTTGCTCCGCATGAGCTGCTCTTCTCCGGACAAAACATTGTTTGACTGGGGAAGGATGCGATTGCCCCGCCCACTCTATGGTGTTGGAGATGCATTTGCCGTGGAGGCTGACGATCAGTTCAGGAAAAAACGAGATGCTGAGAGGCTCTCAAGGTTACAAGAGGAGGAGAAGAATAATATTGAGACTAGAAAACGAAAATTTTTCGCAGAAGTGCTTAATGGTGTTCGTGAATATCAATTGCAAATTCAGGCTTCTATGGCTCGTCGAAAACGAAGGAATGATTTTGTCCAGGGGTGGCATGCAAAGCAAAAACAACGTGCTACTCGAGCTGAGAAATTGAGGTTCCAAGCATTGAAGTCTGATGACCAGGAAGCATACATGAGAATGGTAAAGGAGAGCAAGAATGAGAGACTGACATTGCTTCTTGAAGAAACGAATAAACTCCTTGTCAATTTGGGAGCTGCTGTTCAACGTCAGAAAGATTCTAAACATACAGAGGACATTGAATCTTTAAAAGACTCAGAAGGTGATTTGACTGAGTTGGAAGAGGATGTGGAGATCATTGATTCTGATCGCAATGATGATAGTAGTGACTTGCTTAAAGGTCAGCGGCAATATAACTCTGCCATCCATTCTATCCAGGAACAGGTAACCGAGCAACCTTCTATGCTTGAAGGTGGAGAGTTAAGGCCCTACCAATTGGAGGGTCTACAATGGATGCTCTCCTTGTTCAATAACAATCTAAACGGTATATTGGCTGACGAGATGGGATTGGGTAAAACTATACAAACCATTTCATTGATTGCATATCTCATTGAAAACAAGGGTGTCACTGGGCCCCACTTGATAGTGGCTCCAAAGGCTGTATTACCAAATTGGGTTACTGAATTCGCAGCGTGGGCTCCTAGTATTAAGGCCATTCTTTATGACGGGCGCCAAGAGGAAAGAAAGGCAATGAAGGAAGAATTATCAGGGGAAGGAAAATTTAATGTATTGATCACACATTATGACCTTATCATGAGGGATAAACAATTTTTGAAGAAGATTAGCTGGGCTTACCTGATCGTTGACGAAGGGCATCGGTTGAAGAATTCTGAGTGTGCTCTCGCTATCACACTTGCAGGCTATGACATGCGACGTAGACTTCTATTGACTGGCACACCAATACAGAATAGCTTGCAGGAGTTGTGGTCCCTACTCAATTTTCTTCTCCCACACATTTTCAATTCAGTTCAGAATTTTGAGGAATGGTTTAATGCACCTTTTGCGGATCGGGGTGATATGTCTCTTACGGAGGAAGAACAGCTATTGATCATTCGACGTCTACATCAAGTTATAAGGCCATTCATATTGAGGAGGAAAAAAGATGAAGTTGAGAAATTCCTTCCTGGAAAATCCCAAGTCATACTGAAATGCGACATGTCATCATGGCAGAAAGTATATTATCGACAAGTTACAGATGTGGGCAGGGTCGGGCTAGATAATGGTTCGGGGAAATCAAAGAGCTTGCAGAACCTAACCATGCAGCTCAGAAAGTGTTGTAACCACCCGTACCTTTTTGTCGTGGGAGATTATAACATCTGGCGTCAGGAGGAGATCGTAAGAGCATCAGGAAAATTTGAACTGCTTGATCGTCTACTCCCAAAACTCCAAAAAGCGGGGCATAGAGTCTTGCTTTTCTCACAAATGACTCGCCTCATGGATATTCTTGAAGTTTATCTGCAGCTTCACCATTTCCAGTATCTTCGATTGGATGGTTCAACAAAAACTGAGGAAAGAGGGACTCTGCTAAAGAGATTCAATGCTCCAGACTCTCCTTACTTCATGTTTCTCTTGAGCACTCGTGCTGGAGGTCTTGGTTTGAACTTGCAATCCGCAGATACAGTTATAATTTTTGATAGTGATTGGAATCCTCAGATGGATCAACAGGCAGAGGATCGAGCCCATCGTATAGGTCAAAAGAAAGAAGTCAGGGTATTTGTGTTGGTTAGTGTTGGATCCATTGAAGAAGTAATTTTGGAGCGTGCTAAACAGAAGATGGGAATAGATGCCAAGGTCATCCAGGCCGGACTGTTCAATACAACTTCCACAGCTCAGGACAGAAGAGATATGTTGGAGGAAATCATGCGCAAGGGTACAAGTTCACTTGGCACAGACGTGCCAAGCGAGAGAGAAATCAACCGCCTTGCTGCCAGATCAGATGACGAGTTCCGGATGTTTGAGAAAATGGATGCGGAGAGAAGGCAAAAGGAGAATTATAGATCTCGCCTAATGGAAGAGCATGAGGTTCCTGAGTGGGCATATTCAGCACCTGATAAGGTTACAGCTTCCAAAGGATTTGATTATAGCAATGTCTCGGGAAAGCGGCCAAGAAAGGAGGTACGTTCTTATGCTGATGGCCTTAGTGATTTACAGTTTATGAAAGCTGTAGAAAGTGGAGAAGATGTATCGATGTTTTCCGGTAAAGGAAAGAGGAAAAATCTTTTCCCATCTAAGAGCAGTGTTGTACCTTTGAATGAAAATGTGCCGGTGGTCAGTGGAAGTGAAGAGACATATGGTTTGACCCCACCTTCAAAGAGACACAAGTCTGAAGGACCAAATATAGTGAAACACGAAAGTCATGCAGGAGTTTTCAAAATTACTAGAAAGAAGAGATCAAATTCATCCTCCGACAGTAAAGGCCGAAATTCCAACGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

1045

Amino Acids

119.41

Weight (kDa)

7.34

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 373 - 534 2.5e-11 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 377 - 664 8.9e-93 SNF2-related domain
HDA2-3 PF11496 645 - 823 2.3e-10 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 684 - 797 1.1e-25 Helicase conserved C-terminal domain
SnAC PF14619 888 - 952 1.1e-08 Snf2-ATP coupling, chromatin remodelling complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1772, 2010, 2324
AatII GACGTC 1 cut(s) 1759
Acc16I TGCGCA 1 cut(s) 2564
AccB1I GGYRCC 1 cut(s) 1368
AccB7I CCANNNNNTGG 1 cut(s) 512
AccI GTMKAC 4 cut(s) 1144, 1576, 1759, 2071
AccII CGCG 1 cut(s) 75
AccIII TCCGGA 2 cut(s) 460, 2646
AclWI GGATC 5 cut(s) 1713, 2364, 2379, 2427, 2440
AcoI YGGCCR 1 cut(s) 2801
AcuI CTGAAG 2 cut(s) 281, 3045
AcyI GRCGYC 3 cut(s) 1369, 1756, 2020
AfaI GTAC 4 cut(s) 1988, 2572, 2817, 2943
AfiI CCNNNNNNNGG 5 cut(s) 158, 512, 1081, 1138, 2092
AflIII ACRYGT 1 cut(s) 1854
AjiI CACGTC 1 cut(s) 2593
AjnI CCWGG 6 cut(s) 132, 723, 801, 1074, 1822, 2496
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AleI CACNNNNGTG 1 cut(s) 2591
AloI GAACNNNNNNTCC 4 cut(s) 885, 917, 2291, 2323
Alw21I GWGCWC 2 cut(s) 1540, 2276
Alw26I GTCTC 9 cut(s) 48, 73, 198, 611, 838, 1725, 2794, 2978, 3007
AlwI GGATC 5 cut(s) 1713, 2364, 2379, 2427, 2440
AlwNI CAGNNNCTG 1 cut(s) 2747
Ama87I CYCGRG 2 cut(s) 759, 2791
Aor13HI TCCGGA 2 cut(s) 460, 2646
AoxI GGCC 9 cut(s) 309, 1124, 1271, 1350, 1775, 2499, 2801, 2833, 3115
ApaI GGGCCC 1 cut(s) 1275
ApeKI GCWGC 6 cut(s) 450, 896, 1328, 1960, 2158, 2624
ArsI GACNNNNNNTTYG 2 cut(s) 2977, 3009
AseI ATTAAT 1 cut(s) 260
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 3 cut(s) 220, 1371, 2565
AspS9I GGNCC 6 cut(s) 310, 1125, 1271, 1272, 1626, 3029
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 5 cut(s) 86, 185, 974, 1724, 2156
AvaI CYCGRG 2 cut(s) 759, 2791
AvaII GGWCC 2 cut(s) 1626, 3029
BaeGI GKGCMC 1 cut(s) 1275
BamHI GGATCC 1 cut(s) 2432
BanI GGYRCC 1 cut(s) 1368
BanII GRGCYC 3 cut(s) 1275, 1339, 2380
BauI CACGAG 1 cut(s) 2277
Bbv12I GWGCWC 2 cut(s) 1540, 2276
BbvI GCAGC 6 cut(s) 437, 883, 1340, 1972, 2170, 2611
BccI CCATC 9 cut(s) 125, 1070, 1195, 2183, 2347, 2388, 2467, 2825, 2932
BceAI ACGGC 1 cut(s) 518
BcgI CGANNNNNNTGC 2 cut(s) 3038, 3072
BciT130I CCWGG 6 cut(s) 134, 725, 803, 1076, 1824, 2498
BclI TGATCA 2 cut(s) 1431, 1746
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 9 cut(s) 48, 73, 198, 611, 838, 1725, 2794, 2978, 3007
BfaI CTAG 4 cut(s) 621, 1341, 1913, 3078
BfmI CTRYAG 2 cut(s) 2156, 2862
BfoI RGCGCY 1 cut(s) 1372
BglI GCCNNNNNGGC 2 cut(s) 134, 539
BglII AGATCT 1 cut(s) 2696
BisI GCNGC 8 cut(s) 451, 897, 1046, 1329, 1961, 2159, 2625, 2801
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 8 cut(s) 452, 898, 1047, 1330, 1962, 2160, 2626, 2802
Bme1390I CCNGG 7 cut(s) 134, 271, 725, 803, 1076, 1824, 2498
Bme18I GGWCC 2 cut(s) 1626, 3029
BmeT110I CYCGRG 2 cut(s) 759, 2791
BmgBI CACGTC 1 cut(s) 2593
BmgT120I GGNCC 6 cut(s) 310, 1125, 1271, 1272, 1626, 3029
BmrFI CCNGG 7 cut(s) 134, 271, 725, 803, 1076, 1824, 2498
BmrI ACTGGG 2 cut(s) 490, 1278
BmsI GCATC 9 cut(s) 205, 480, 514, 559, 1143, 1522, 2051, 2473, 2656
BmuI ACTGGG 2 cut(s) 490, 1278
BoxI GACNNNNGTC 1 cut(s) 3019
BplI GAGNNNNNCTC 2 cut(s) 566, 598
BpmI CTGGAG 2 cut(s) 2226, 2304
Bpu10I CCTNAGC 1 cut(s) 2529
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 2 cut(s) 568, 2290
BpuMI CCSGG 1 cut(s) 271
Bsa29I ATCGAT 1 cut(s) 2885
BsaBI GATNNNNATC 2 cut(s) 1005, 2343
BsaHI GRCGYC 3 cut(s) 1369, 1756, 2020
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 5 cut(s) 132, 270, 534, 724, 2487
BsaWI WCCGGW 4 cut(s) 248, 460, 2646, 2894
BsaXI ACNNNNNCTCC 8 cut(s) 53, 83, 885, 915, 1610, 1640, 2865, 2895
Bsc4I CCNNNNNNNGG 5 cut(s) 158, 512, 1081, 1138, 2092
Bse118I RCCGGY 1 cut(s) 2962
Bse1I ACTGG 5 cut(s) 312, 485, 1273, 1594, 2173
Bse3DI GCAATG 4 cut(s) 851, 1018, 1395, 2791
Bse8I GATNNNNATC 2 cut(s) 1005, 2343
BseAI TCCGGA 2 cut(s) 460, 2646
BseBI CCWGG 6 cut(s) 134, 725, 803, 1076, 1824, 2498
BseCI ATCGAT 1 cut(s) 2885
BseDI CCNNGG 5 cut(s) 132, 270, 534, 724, 2487
BseJI GATNNNNATC 2 cut(s) 1005, 2343
BseLI CCNNNNNNNGG 5 cut(s) 158, 512, 1081, 1138, 2092
BseMI GCAATG 4 cut(s) 851, 1018, 1395, 2791
BseNI ACTGG 5 cut(s) 312, 485, 1273, 1594, 2173
BseRI GAGGAG 7 cut(s) 81, 354, 359, 611, 614, 1804, 2042
BseSI GKGCMC 1 cut(s) 1275
BseXI GCAGC 6 cut(s) 437, 883, 1340, 1972, 2170, 2611
BseYI CCCAGC 2 cut(s) 312, 1485
BsgI GTGCAG 1 cut(s) 262
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 9 cut(s) 311, 1126, 1273, 1352, 1777, 2501, 2803, 2835, 3117
BshNI GGYRCC 1 cut(s) 1368
BshVI ATCGAT 1 cut(s) 2885
BsiHKAI GWGCWC 2 cut(s) 1540, 2276
BsiHKCI CYCGRG 2 cut(s) 759, 2791
BsiSI CCGG 7 cut(s) 249, 270, 461, 2502, 2647, 2895, 2963
BslFI GGGAC 2 cut(s) 1612, 2230
BslI CCNNNNNNNGG 5 cut(s) 158, 512, 1081, 1138, 2092
BsmAI GTCTC 9 cut(s) 48, 73, 198, 611, 838, 1725, 2794, 2978, 3007
BsmBI CGTCTC 1 cut(s) 73
BsmFI GGGAC 2 cut(s) 1612, 2230
BsnI GGCC 9 cut(s) 311, 1126, 1273, 1352, 1777, 2501, 2803, 2835, 3117
Bso31I GGTCTC 1 cut(s) 198
BsoBI CYCGRG 2 cut(s) 759, 2791
Bsp120I GGGCCC 1 cut(s) 1271
Bsp1286I GDGCHC 5 cut(s) 1275, 1339, 1540, 2276, 2380
Bsp13I TCCGGA 2 cut(s) 460, 2646
Bsp1720I GCTNAGC 1 cut(s) 6
BspANI GGCC 9 cut(s) 311, 1126, 1273, 1352, 1777, 2501, 2803, 2835, 3117
BspDI ATCGAT 1 cut(s) 2885
BspEI TCCGGA 2 cut(s) 460, 2646
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 1452
BspMAI CTGCAG 1 cut(s) 2160
BspPI GGATC 5 cut(s) 1713, 2364, 2379, 2427, 2440
BspQI GCTCTTC 2 cut(s) 460, 2706
BspT107I GGYRCC 1 cut(s) 1368
BspTNI GGTCTC 1 cut(s) 198
BsrDI GCAATG 4 cut(s) 851, 1018, 1395, 2791
BsrFI RCCGGY 1 cut(s) 2962
BsrI ACTGG 5 cut(s) 312, 485, 1273, 1594, 2173
BssAI RCCGGY 1 cut(s) 2962
BssECI CCNNGG 5 cut(s) 132, 270, 534, 724, 2487
BssNI GRCGYC 3 cut(s) 1369, 1756, 2020
BssSI CACGAG 1 cut(s) 2277
BssT1I CCWWGG 1 cut(s) 2487
Bst2BI CACGAG 1 cut(s) 2277
Bst2UI CCWGG 6 cut(s) 134, 725, 803, 1076, 1824, 2498
Bst4CI ACNGT 6 cut(s) 161, 1184, 2320, 2508, 2850, 3110
Bst6I CTCTTC 7 cut(s) 104, 460, 975, 2533, 2706, 2976, 3080
BstACI GRCGYC 3 cut(s) 1369, 1756, 2020
BstAPI GCANNNNNTGC 2 cut(s) 450, 1700
BstC8I GCNNGC 7 cut(s) 365, 390, 735, 1558, 1613, 1943, 2460
BstDSI CCRYGG 1 cut(s) 534
BstEII GGTNACC 1 cut(s) 1084
BstFNI CGCG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 1372
BstHHI GCGC 3 cut(s) 220, 1371, 2565
BstMAI GTCTC 9 cut(s) 48, 73, 198, 611, 838, 1725, 2794, 2978, 3007
BstNI CCWGG 6 cut(s) 134, 725, 803, 1076, 1824, 2498
BstNSI RCATGY 3 cut(s) 737, 1570, 1858
BstPAI GACNNNNGTC 1 cut(s) 3019
BstPI GGTNACC 1 cut(s) 1084
BstSCI CCNGG 7 cut(s) 132, 269, 723, 801, 1074, 1822, 2496
BstSFI CTRYAG 2 cut(s) 2156, 2862
BstSLI GKGCMC 1 cut(s) 1275
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 6 cut(s) 437, 883, 1340, 1972, 2170, 2611
BstX2I RGATCY 2 cut(s) 2432, 2696
BstYI RGATCY 2 cut(s) 2432, 2696
Bsu15I ATCGAT 1 cut(s) 2885
BsuRI GGCC 9 cut(s) 311, 1126, 1273, 1352, 1777, 2501, 2803, 2835, 3117
BsuTUI ATCGAT 1 cut(s) 2885
BtgI CCRYGG 1 cut(s) 534
BtrI CACGTC 1 cut(s) 2593
BtsI GCAGTG 1 cut(s) 2941
BtsIMutI CAGTG 3 cut(s) 1266, 2941, 2977
Cac8I GCNNGC 7 cut(s) 365, 390, 735, 1558, 1613, 1943, 2460
CaiI CAGNNNCTG 1 cut(s) 2747
CciI TCATGA 1 cut(s) 1452
CfoI GCGC 3 cut(s) 220, 1371, 2565
Cfr10I RCCGGY 1 cut(s) 2962
Cfr13I GGNCC 6 cut(s) 310, 1125, 1271, 1272, 1626, 3029
ClaI ATCGAT 1 cut(s) 2885
CseI GACGC 1 cut(s) 2009
Csp6I GTAC 4 cut(s) 1987, 2571, 2816, 2942
CviQI GTAC 4 cut(s) 1987, 2571, 2816, 2942
DinI GGCGCC 1 cut(s) 1370
DraI TTTAAA 1 cut(s) 948
EaeI YGGCCR 1 cut(s) 2801
Eam1104I CTCTTC 7 cut(s) 104, 460, 975, 2533, 2706, 2976, 3080
EarI CTCTTC 7 cut(s) 104, 460, 975, 2533, 2706, 2976, 3080
Eco130I CCWWGG 1 cut(s) 2487
Eco24I GRGCYC 3 cut(s) 1275, 1339, 2380
Eco31I GGTCTC 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 1626, 3029
Eco57I CTGAAG 2 cut(s) 281, 3045
Eco88I CYCGRG 2 cut(s) 759, 2791
Eco91I GGTNACC 1 cut(s) 1084
EcoO109I RGGNCCY 2 cut(s) 1125, 1272
EcoO65I GGTNACC 1 cut(s) 1084
EcoRI GAATTC 3 cut(s) 371, 1322, 1525
EcoRII CCWGG 6 cut(s) 132, 723, 801, 1074, 1822, 2496
EcoT14I CCWWGG 1 cut(s) 2487
EcoT22I ATGCAT 1 cut(s) 529
EcoT38I GRGCYC 3 cut(s) 1275, 1339, 2380
EgeI GGCGCC 1 cut(s) 1370
EheI GGCGCC 1 cut(s) 1370
ErhI CCWWGG 1 cut(s) 2487
Esp3I CGTCTC 1 cut(s) 73
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FaqI GGGAC 2 cut(s) 1612, 2230
FauI CCCGC 3 cut(s) 80, 509, 2086
FauNDI CATATG 1 cut(s) 2989
FbaI TGATCA 2 cut(s) 1431, 1746
FblI GTMKAC 4 cut(s) 1144, 1576, 1759, 2071
Fnu4HI GCNGC 8 cut(s) 451, 897, 1046, 1329, 1961, 2159, 2625, 2801
FriOI GRGCYC 3 cut(s) 1275, 1339, 2380
Fsp4HI GCNGC 8 cut(s) 451, 897, 1046, 1329, 1961, 2159, 2625, 2801
FspBI CTAG 4 cut(s) 621, 1341, 1913, 3078
FspI TGCGCA 1 cut(s) 2564
GlaI GCGC 3 cut(s) 219, 1370, 2564
GluI GCNGC 8 cut(s) 451, 897, 1046, 1329, 1961, 2159, 2625, 2801
GsaI CCCAGC 2 cut(s) 316, 1489
GsuI CTGGAG 2 cut(s) 2226, 2304
HaeII RGCGCY 1 cut(s) 1372
HaeIII GGCC 9 cut(s) 311, 1126, 1273, 1352, 1777, 2501, 2803, 2835, 3117
HapII CCGG 7 cut(s) 249, 270, 461, 2502, 2647, 2895, 2963
HgaI GACGC 1 cut(s) 2009
HhaI GCGC 3 cut(s) 220, 1371, 2565
Hin1I GRCGYC 3 cut(s) 1369, 1756, 2020
Hin6I GCGC 3 cut(s) 218, 1369, 2563
HinP1I GCGC 3 cut(s) 218, 1369, 2563
HincII GTYRAC 1 cut(s) 1504
HindII GTYRAC 1 cut(s) 1504
HindIII AAGCTT 1 cut(s) 386
HpaII CCGG 7 cut(s) 249, 270, 461, 2502, 2647, 2895, 2963
HphI GGTGA 5 cut(s) 86, 185, 974, 1724, 2156
Hpy166II GTNNAC 6 cut(s) 1145, 1504, 1577, 1760, 2072, 2579
Hpy8I GTNNAC 6 cut(s) 1145, 1504, 1577, 1760, 2072, 2579
Hpy99I CGWCG 4 cut(s) 161, 702, 1575, 1758
HpyCH4III ACNGT 6 cut(s) 161, 1184, 2320, 2508, 2850, 3110
HpyCH4IV ACGT 7 cut(s) 232, 751, 907, 1573, 1756, 2592, 2818
HpySE526I ACGT 7 cut(s) 232, 751, 907, 1573, 1756, 2592, 2818
Hsp92I GRCGYC 3 cut(s) 1369, 1756, 2020
HspAI GCGC 3 cut(s) 218, 1369, 2563
KasI GGCGCC 1 cut(s) 1368
Kpn2I TCCGGA 2 cut(s) 460, 2646
Ksp22I TGATCA 2 cut(s) 1431, 1746
LguI GCTCTTC 2 cut(s) 460, 2706
LmnI GCTCC 7 cut(s) 142, 444, 893, 1294, 1342, 2245, 2455
Lsp1109I GCAGC 6 cut(s) 437, 883, 1340, 1972, 2170, 2611
LweI GCATC 9 cut(s) 205, 480, 514, 559, 1143, 1522, 2051, 2473, 2656
MaeI CTAG 4 cut(s) 621, 1341, 1913, 3078
MaeII ACGT 7 cut(s) 232, 751, 907, 1573, 1756, 2592, 2818
MaeIII GTNAC 9 cut(s) 233, 588, 1025, 1084, 1264, 1315, 1888, 1976, 2755
MfeI CAATTG 2 cut(s) 671, 1133
MflI RGATCY 2 cut(s) 2432, 2696
MhlI GDGCHC 5 cut(s) 1275, 1339, 1540, 2276, 2380
Mly113I GGCGCC 1 cut(s) 1369
MlyI GAGTC 5 cut(s) 947, 2112, 2119, 2212, 2240
MmeI TCCRAC 6 cut(s) 235, 499, 957, 2410, 2529, 3129
Mph1103I ATGCAT 1 cut(s) 529
MroI TCCGGA 2 cut(s) 460, 2646
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 8 cut(s) 260, 651, 947, 1035, 1121, 1347, 1422, 1689
MslI CAYNNNNRTG 2 cut(s) 818, 2591
MspA1I CMGCKG 2 cut(s) 10, 1045
MspI CCGG 7 cut(s) 249, 270, 461, 2502, 2647, 2895, 2963
MspR9I CCNGG 7 cut(s) 134, 271, 725, 803, 1076, 1824, 2498
MunI CAATTG 2 cut(s) 671, 1133
MvaI CCWGG 6 cut(s) 134, 725, 803, 1076, 1824, 2498
MvnI CGCG 1 cut(s) 75
NarI GGCGCC 1 cut(s) 1369
NciI CCSGG 1 cut(s) 271
NdeI CATATG 1 cut(s) 2989
NmuCI GTSAC 3 cut(s) 233, 1025, 1264
NsbI TGCGCA 1 cut(s) 2564
NsiI ATGCAT 1 cut(s) 529
NspI RCATGY 3 cut(s) 737, 1570, 1858
OliI CACNNNNGTG 1 cut(s) 2591
PaeI GCATGC 1 cut(s) 737
PaeR7I CTCGAG 1 cut(s) 759
PagI TCATGA 1 cut(s) 1452
PciI ACATGT 1 cut(s) 1854
PciSI GCTCTTC 2 cut(s) 460, 2706
PcsI WCGNNNNNNNCGW 5 cut(s) 72, 703, 757, 2380, 2598
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 6 cut(s) 266, 917, 941, 1001, 2232, 2344
PflFI GACNNNGTC 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 512
PfoI TCCNGGA 2 cut(s) 1074, 1822
PkrI GCNGC 8 cut(s) 452, 898, 1047, 1330, 1962, 2160, 2626, 2802
PleI GAGTC 5 cut(s) 947, 2111, 2119, 2212, 2240
PluTI GGCGCC 1 cut(s) 1372
PpsI GAGTC 5 cut(s) 947, 2111, 2119, 2212, 2240
PscI ACATGT 1 cut(s) 1854
PshAI GACNNNNGTC 1 cut(s) 3019
PshBI ATTAAT 1 cut(s) 260
PsiI TTATAA 3 cut(s) 1772, 2010, 2324
Psp6I CCWGG 6 cut(s) 132, 723, 801, 1074, 1822, 2496
PspEI GGTNACC 1 cut(s) 1084
PspFI CCCAGC 2 cut(s) 312, 1485
PspGI CCWGG 6 cut(s) 132, 723, 801, 1074, 1822, 2496
PspOMI GGGCCC 1 cut(s) 1271
PspPI GGNCC 6 cut(s) 310, 1125, 1271, 1272, 1626, 3029
PspXI VCTCGAGB 1 cut(s) 759
PstI CTGCAG 1 cut(s) 2160
PstNI CAGNNNCTG 1 cut(s) 2747
PsuI RGATCY 2 cut(s) 2432, 2696
PsyI GACNNNGTC 1 cut(s) 40
PvuII CAGCTG 1 cut(s) 10
RsaI GTAC 4 cut(s) 1988, 2572, 2817, 2943
RsaNI GTAC 4 cut(s) 1987, 2571, 2816, 2942
RseI CAYNNNNRTG 2 cut(s) 818, 2591
SapI GCTCTTC 2 cut(s) 460, 2706
SaqAI TTAA 8 cut(s) 260, 651, 947, 1035, 1121, 1347, 1422, 1689
SatI GCNGC 8 cut(s) 451, 897, 1046, 1329, 1961, 2159, 2625, 2801
Sau96I GGNCC 6 cut(s) 310, 1125, 1271, 1272, 1626, 3029
SchI GAGTC 5 cut(s) 947, 2112, 2119, 2212, 2240
ScrFI CCNGG 7 cut(s) 134, 271, 725, 803, 1076, 1824, 2498
SduI GDGCHC 5 cut(s) 1275, 1339, 1540, 2276, 2380
SfaNI GCATC 9 cut(s) 205, 480, 514, 559, 1143, 1522, 2051, 2473, 2656
SfcI CTRYAG 2 cut(s) 2156, 2862
SfoI GGCGCC 1 cut(s) 1370
Sfr274I CTCGAG 1 cut(s) 759
SinI GGWCC 2 cut(s) 1626, 3029
SlaI CTCGAG 1 cut(s) 759
SmiMI CAYNNNNRTG 2 cut(s) 818, 2591
SmlI CTYRAG 3 cut(s) 583, 759, 2269
SmoI CTYRAG 3 cut(s) 583, 759, 2269
SphI GCATGC 1 cut(s) 737
SspDI GGCGCC 1 cut(s) 1368
SspI AATATT 1 cut(s) 613
SspMI CTAG 4 cut(s) 621, 1341, 1913, 3078
StyD4I CCNGG 7 cut(s) 132, 269, 723, 801, 1074, 1822, 2496
StyI CCWWGG 1 cut(s) 2487
TaaI ACNGT 6 cut(s) 161, 1184, 2320, 2508, 2850, 3110
TaiI ACGT 7 cut(s) 235, 754, 910, 1576, 1759, 2595, 2821
TaqI TCGA 9 cut(s) 21, 102, 700, 760, 1753, 1882, 2182, 2374, 2885
TauI GCSGC 2 cut(s) 1048, 2803
TfiI GAWTC 6 cut(s) 266, 917, 941, 1001, 2232, 2344
Tru1I TTAA 8 cut(s) 260, 651, 947, 1035, 1121, 1347, 1422, 1689
Tru9I TTAA 8 cut(s) 260, 651, 947, 1035, 1121, 1347, 1422, 1689
TscAI CASTG 3 cut(s) 1273, 2941, 2977
TseFI GTSAC 3 cut(s) 233, 1025, 1264
TseI GCWGC 6 cut(s) 450, 896, 1328, 1960, 2158, 2624
Tsp45I GTSAC 3 cut(s) 233, 1025, 1264
TspDTI ATGAA 9 cut(s) 183, 1221, 1406, 1771, 1818, 2248, 2870, 2967, 3087
TspGWI ACGGA 1 cut(s) 1742
TspRI CASTG 3 cut(s) 1273, 2941, 2977
Tth111I GACNNNGTC 1 cut(s) 40
Van91I CCANNNNNTGG 1 cut(s) 512
VpaK11BI GGWCC 2 cut(s) 1626, 3029
VspI ATTAAT 1 cut(s) 260
XceI RCATGY 3 cut(s) 737, 1570, 1858
XhoI CTCGAG 1 cut(s) 759
XmiI GTMKAC 4 cut(s) 1144, 1576, 1759, 2071
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 4 cut(s) 621, 1341, 1913, 3078
ZraI GACGTC 1 cut(s) 1757
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.