RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g31470 FvH4_2g31470 |
| malus_domestica | MD08G1066100.v1.1 MD15G1055100.v1.1 |
| prunus_persica | Prupe.1G408300_v2.0.a1 |
| pyrus_communis | pycom08g05480 pycom15g05200 |
| rosa_chinensis | RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331 |
| rosa_laevigata | RLG00000010416 |
| rosa_multiflora | Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017 |
| rosa_roxburghii | Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750 |
| rosa_rugosa | Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1 |
| rosa_samantha | Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800 |
| rosa_wichuraiana | Rw3G022150 Rw5G025820 Rw6G043740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcyI | GRCGYC | 1 cut(s) | 47 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 268 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 173 |
| AjnI | CCWGG | 2 cut(s) | 49, 97 |
| AluBI | AGCT | 2 cut(s) | 146, 182 |
| AluI | AGCT | 2 cut(s) | 146, 182 |
| Alw26I | GTCTC | 1 cut(s) | 257 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 122 |
| AsuHPI | GGTGA | 2 cut(s) | 104, 257 |
| BccI | CCATC | 2 cut(s) | 139, 242 |
| BciT130I | CCWGG | 2 cut(s) | 51, 99 |
| BcoDI | GTCTC | 1 cut(s) | 257 |
| Bme1390I | CCNGG | 2 cut(s) | 51, 99 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 173 |
| BmrFI | CCNGG | 2 cut(s) | 51, 99 |
| BmrI | ACTGGG | 1 cut(s) | 251 |
| BmsI | GCATC | 1 cut(s) | 58 |
| BmuI | ACTGGG | 1 cut(s) | 251 |
| BpuEI | CTTGAG | 1 cut(s) | 178 |
| BsaHI | GRCGYC | 1 cut(s) | 47 |
| BsaI | GGTCTC | 1 cut(s) | 257 |
| BsaJI | CCNNGG | 1 cut(s) | 50 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 268 |
| Bse1I | ACTGG | 1 cut(s) | 257 |
| BseBI | CCWGG | 2 cut(s) | 51, 99 |
| BseDI | CCNNGG | 1 cut(s) | 50 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 268 |
| BseMII | CTCAG | 1 cut(s) | 161 |
| BseNI | ACTGG | 1 cut(s) | 257 |
| BseRI | GAGGAG | 1 cut(s) | 253 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 268 |
| BsmAI | GTCTC | 1 cut(s) | 257 |
| Bso31I | GGTCTC | 1 cut(s) | 257 |
| BspCNI | CTCAG | 1 cut(s) | 160 |
| BspTNI | GGTCTC | 1 cut(s) | 257 |
| BsrI | ACTGG | 1 cut(s) | 257 |
| BssECI | CCNNGG | 1 cut(s) | 50 |
| BssNI | GRCGYC | 1 cut(s) | 47 |
| Bst2UI | CCWGG | 2 cut(s) | 51, 99 |
| Bst4CI | ACNGT | 1 cut(s) | 109 |
| BstACI | GRCGYC | 1 cut(s) | 47 |
| BstC8I | GCNNGC | 1 cut(s) | 184 |
| BstDEI | CTNAG | 1 cut(s) | 147 |
| BstMAI | GTCTC | 1 cut(s) | 257 |
| BstNI | CCWGG | 2 cut(s) | 51, 99 |
| BstSCI | CCNGG | 2 cut(s) | 49, 97 |
| Cac8I | GCNNGC | 1 cut(s) | 184 |
| CaiI | CAGNNNCTG | 1 cut(s) | 122 |
| CseI | GACGC | 1 cut(s) | 55 |
| CsiI | ACCWGGT | 1 cut(s) | 97 |
| CviAII | CATG | 1 cut(s) | 170 |
| CviJI | RGCY | 4 cut(s) | 122, 146, 182, 192 |
| CviKI_1 | RGCY | 4 cut(s) | 122, 146, 182, 192 |
| DdeI | CTNAG | 1 cut(s) | 147 |
| DriI | GACNNNNNGTC | 1 cut(s) | 173 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 173 |
| Eco31I | GGTCTC | 1 cut(s) | 257 |
| EcoRII | CCWGG | 2 cut(s) | 49, 97 |
| FaeI | CATG | 1 cut(s) | 173 |
| FaiI | YATR | 4 cut(s) | 33, 35, 60, 171 |
| FatI | CATG | 1 cut(s) | 169 |
| FauNDI | CATATG | 1 cut(s) | 33 |
| HgaI | GACGC | 1 cut(s) | 55 |
| Hin1I | GRCGYC | 1 cut(s) | 47 |
| Hin1II | CATG | 1 cut(s) | 173 |
| HinfI | GANTC | 1 cut(s) | 272 |
| HphI | GGTGA | 2 cut(s) | 104, 257 |
| Hpy166II | GTNNAC | 1 cut(s) | 95 |
| Hpy188I | TCNGA | 2 cut(s) | 150, 179 |
| Hpy188III | TCNNGA | 1 cut(s) | 262 |
| Hpy8I | GTNNAC | 1 cut(s) | 95 |
| HpyAV | CCTTC | 1 cut(s) | 243 |
| HpyCH4III | ACNGT | 1 cut(s) | 109 |
| HpyCH4V | TGCA | 1 cut(s) | 31 |
| HpyF3I | CTNAG | 1 cut(s) | 147 |
| Hsp92I | GRCGYC | 1 cut(s) | 47 |
| Hsp92II | CATG | 1 cut(s) | 173 |
| LmnI | GCTCC | 1 cut(s) | 179 |
| LpnPI | CCDG | 9 cut(s) | 36, 63, 84, 102, 108, 111, 168, 270, 275 |
| LweI | GCATC | 1 cut(s) | 58 |
| MabI | ACCWGGT | 1 cut(s) | 97 |
| MaeIII | GTNAC | 1 cut(s) | 109 |
| MluCI | AATT | 2 cut(s) | 8, 277 |
| MmeI | TCCRAC | 1 cut(s) | 157 |
| MnlI | CCTC | 3 cut(s) | 30, 166, 231 |
| MseI | TTAA | 1 cut(s) | 280 |
| MspR9I | CCNGG | 2 cut(s) | 51, 99 |
| MvaI | CCWGG | 2 cut(s) | 51, 99 |
| NdeI | CATATG | 1 cut(s) | 33 |
| NlaIII | CATG | 1 cut(s) | 173 |
| PfeI | GAWTC | 1 cut(s) | 272 |
| Psp6I | CCWGG | 2 cut(s) | 49, 97 |
| PspGI | CCWGG | 2 cut(s) | 49, 97 |
| PstNI | CAGNNNCTG | 1 cut(s) | 122 |
| SaqAI | TTAA | 1 cut(s) | 280 |
| ScrFI | CCNGG | 2 cut(s) | 51, 99 |
| SetI | ASST | 6 cut(s) | 41, 100, 148, 177, 184, 227 |
| SexAI | ACCWGGT | 1 cut(s) | 97 |
| SfaNI | GCATC | 1 cut(s) | 58 |
| SmlI | CTYRAG | 1 cut(s) | 193 |
| SmoI | CTYRAG | 1 cut(s) | 193 |
| Sse9I | AATT | 2 cut(s) | 8, 277 |
| StyD4I | CCNGG | 2 cut(s) | 49, 97 |
| TaaI | ACNGT | 1 cut(s) | 109 |
| TaqI | TCGA | 1 cut(s) | 236 |
| TasI | AATT | 2 cut(s) | 8, 277 |
| TfiI | GAWTC | 1 cut(s) | 272 |
| Tru1I | TTAA | 1 cut(s) | 280 |
| Tru9I | TTAA | 1 cut(s) | 280 |
| TspDTI | ATGAA | 1 cut(s) | 17 |