Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002860

Physical Location & Seq

Genomic Coordinates Reverse (-)

67583792 .. 67588826

Gene Structure 5035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG502200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCGGATCCCTACCATAGATACGCTGCTCCGCCGGAACGAGGTAGTGTAGCAAATTCCAATTTTCCTGGTTACTTATCATCCGAAGCACCATCGTTACTATCGAATCACACTTTTGCCCCTACTGATTTGAGAAGCTATTCTTCGGATTTTCGGCTGAGAGATAAATCGTCGTGGTCTGTGCCGTATGGTGTAGATGATAGTGTGGGTAGTAGAGTTCGTTCTGATTCGGGTGTTGGGGTGACAGCAGGGTCTAGCCTATATGATCCTTTGGAAGATACTTATCGAAACCAGAGACAGGATATTGCGATGAGGTCAATGACGCCTGGGGTTTATGGTGTAGATGCTGTGAGTGTTAGTGTTCGTGGTGAACCTGGTCTTGCTGTAATAGCGGGGGCTGGTTTTCCATCTCCTTTACAAGCTCAGACTTTACTAAACCAAAGACATGCCACTGGAGTGGGCATTGGCTCGAGTGTTTCTACTGACATTAGTAGAGAAAGGTCTGTGCCTTCAAGGAGTGGTGATGGTCTCCCAGTCCTGAAAGGGGAATCAAACATTTTGTTTGTGGATGGACTTCCCACTGACTGTACCAGAAGAGAAGTAGGCCGTATCCTTTTGCTTTTCATGTGTCTATTTTTGCATGCCTGTGAATGTTTCAGGTATGCAACATTTCCAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

226

Amino Acids

24.29

Weight (kDa)

6.07

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31470 FvH4_2g31470
malus_domestica	MD08G1066100.v1.1 MD15G1055100.v1.1
prunus_persica	Prupe.1G408300_v2.0.a1
pyrus_communis	pycom08g05480 pycom15g05200
rosa_chinensis	RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331
rosa_laevigata	RLG00000010416
rosa_multiflora	Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750
rosa_rugosa	Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1
rosa_samantha	Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800
rosa_wichuraiana	Rw3G022150 Rw5G025820 Rw6G043740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	250
AciI	CCGC	3 cut(s)	5, 32, 392
AclWI	GGATC	3 cut(s)	2, 15, 260
AcsI	RAATTY	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	323
AfaI	GTAC	1 cut(s)	589
AfiI	CCNNNNNNNGG	3 cut(s)	41, 298, 544
AgsI	TTSAA	1 cut(s)	513
AjnI	CCWGG	4 cut(s)	67, 325, 373, 673
AleI	CACNNNNGTG	1 cut(s)	455
AluBI	AGCT	2 cut(s)	138, 422
AluI	AGCT	2 cut(s)	138, 422
Alw26I	GTCTC	2 cut(s)	289, 533
AlwI	GGATC	3 cut(s)	2, 15, 260
Ama87I	CYCGRG	1 cut(s)	469
AoxI	GGCC	1 cut(s)	604
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	139
AsuHPI	GGTGA	3 cut(s)	253, 380, 533
AvaI	CYCGRG	1 cut(s)	469
BamHI	GGATCC	1 cut(s)	7
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	4 cut(s)	100, 415, 518, 563
BceAI	ACGGC	2 cut(s)	169, 591
BciT130I	CCWGG	4 cut(s)	69, 327, 375, 675
BciVI	GTATCC	1 cut(s)	620
BcoDI	GTCTC	2 cut(s)	289, 533
BfaI	CTAG	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	620
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	4 cut(s)	69, 327, 375, 675
BmeT110I	CYCGRG	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	4 cut(s)	69, 327, 375, 675
BmrI	ACTGGG	1 cut(s)	527
BmsI	GCATC	1 cut(s)	334
BmuI	ACTGGG	1 cut(s)	527
BpmI	CTGGAG	1 cut(s)	474
BsaBI	GATNNNNATC	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	323
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 298, 544
Bse1I	ACTGG	2 cut(s)	457, 533
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	4 cut(s)	69, 327, 375, 675
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	2 cut(s)	80, 574
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	3 cut(s)	41, 298, 544
BseMII	CTCAG	2 cut(s)	149, 437
BseNI	ACTGG	2 cut(s)	457, 533
BseXI	GCAGC	1 cut(s)	13
BshFI	GGCC	1 cut(s)	606
BsiHKCI	CYCGRG	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	41, 298, 544
BsmAI	GTCTC	2 cut(s)	289, 533
BsnI	GGCC	1 cut(s)	606
Bso31I	GGTCTC	1 cut(s)	533
BsoBI	CYCGRG	1 cut(s)	469
Bsp143I	GATC	2 cut(s)	7, 265
BspACI	CCGC	3 cut(s)	5, 32, 392
BspANI	GGCC	1 cut(s)	606
BspCNI	CTCAG	2 cut(s)	150, 436
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	3 cut(s)	2, 15, 260
BspTNI	GGTCTC	1 cut(s)	533
BsrI	ACTGG	2 cut(s)	457, 533
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	2 cut(s)	7, 265
BssNI	GRCGYC	1 cut(s)	323
Bst2UI	CCWGG	4 cut(s)	69, 327, 375, 675
Bst4CI	ACNGT	1 cut(s)	587
Bst6I	CTCTTC	1 cut(s)	589
BstACI	GRCGYC	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	2 cut(s)	158, 423
BstF5I	GGATG	2 cut(s)	80, 574
BstKTI	GATC	2 cut(s)	10, 268
BstMAI	GTCTC	2 cut(s)	289, 533
BstMBI	GATC	2 cut(s)	7, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	4 cut(s)	69, 327, 375, 675
BstNSI	RCATGY	2 cut(s)	449, 644
BstSCI	CCNGG	4 cut(s)	67, 325, 373, 673
BstV1I	GCAGC	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	7
BstXI	CCANNNNNNTGG	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	7
BsuI	GTATCC	1 cut(s)	620
BsuRI	GGCC	1 cut(s)	606
BtgZI	GCGATG	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	80, 574
BtsIMutI	CAGTG	2 cut(s)	450, 579
Cac8I	GCNNGC	1 cut(s)	642
CseI	GACGC	1 cut(s)	331
CsiI	ACCWGGT	1 cut(s)	373
Csp6I	GTAC	1 cut(s)	588
CviAII	CATG	3 cut(s)	446, 625, 641
CviJI	RGCY	7 cut(s)	138, 157, 258, 398, 422, 468, 606
CviKI_1	RGCY	7 cut(s)	138, 157, 258, 398, 422, 468, 606
CviQI	GTAC	1 cut(s)	588
DdeI	CTNAG	2 cut(s)	158, 423
DpnI	GATC	2 cut(s)	9, 267
DpnII	GATC	2 cut(s)	7, 265
DrdI	GACNNNNNNGTC	1 cut(s)	250
DseDI	GACNNNNNNGTC	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	589
EciI	GGCGGA	2 cut(s)	20, 21
Eco31I	GGTCTC	1 cut(s)	533
Eco88I	CYCGRG	1 cut(s)	469
EcoRII	CCWGG	4 cut(s)	67, 325, 373, 673
FaeI	CATG	3 cut(s)	449, 628, 644
FaiI	YATR	9 cut(s)	18, 189, 262, 264, 336, 447, 626, 642, 663
FalI	AAGNNNNNCTT	2 cut(s)	127, 159
FatI	CATG	3 cut(s)	445, 624, 640
FauI	CCCGC	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	2 cut(s)	67, 581
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	1 cut(s)	27
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	606
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	331
Hin1I	GRCGYC	1 cut(s)	323
Hin1II	CATG	3 cut(s)	449, 628, 644
HinfI	GANTC	3 cut(s)	106, 227, 548
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	3 cut(s)	253, 380, 533
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	4 cut(s)	85, 148, 226, 426
Hpy188III	TCNNGA	1 cut(s)	538
Hpy8I	GTNNAC	1 cut(s)	371
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	519
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4V	TGCA	2 cut(s)	640, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	2 cut(s)	158, 423
Hsp92I	GRCGYC	1 cut(s)	323
Hsp92II	CATG	3 cut(s)	449, 628, 644
Kzo9I	GATC	2 cut(s)	7, 265
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	1 cut(s)	334
MabI	ACCWGGT	1 cut(s)	373
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	3 cut(s)	71, 96, 241
MalI	GATC	2 cut(s)	9, 267
MboI	GATC	2 cut(s)	7, 265
MboII	GAAGA	3 cut(s)	135, 287, 606
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	2 cut(s)	55, 61
MnlI	CCTC	2 cut(s)	35, 306
MroXI	GAANNNNTTC	1 cut(s)	139
MslI	CAYNNNNRTG	2 cut(s)	455, 645
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	4 cut(s)	69, 327, 375, 675
MvaI	CCWGG	4 cut(s)	69, 327, 375, 675
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeII	GATC	2 cut(s)	7, 265
NlaIII	CATG	3 cut(s)	449, 628, 644
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	2 cut(s)	449, 644
OliI	CACNNNNGTG	1 cut(s)	455
PaeI	GCATGC	1 cut(s)	644
PaeR7I	CTCGAG	1 cut(s)	469
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	139
PfeI	GAWTC	3 cut(s)	106, 227, 548
PfoI	TCCNGGA	1 cut(s)	673
PkrI	GCNGC	1 cut(s)	28
Psp6I	CCWGG	4 cut(s)	67, 325, 373, 673
PspGI	CCWGG	4 cut(s)	67, 325, 373, 673
PspN4I	GGNNCC	1 cut(s)	9
PspXI	VCTCGAGB	1 cut(s)	469
PsrI	GAACNNNNNNTAC	2 cut(s)	205, 237
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	1 cut(s)	589
RsaNI	GTAC	1 cut(s)	588
RseI	CAYNNNNRTG	2 cut(s)	455, 645
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	2 cut(s)	7, 265
ScrFI	CCNGG	4 cut(s)	69, 327, 375, 675
SetI	ASST	7 cut(s)	46, 140, 317, 376, 424, 503, 662
SexAI	ACCWGGT	1 cut(s)	373
SfaNI	GCATC	1 cut(s)	334
Sfr274I	CTCGAG	1 cut(s)	469
SlaI	CTCGAG	1 cut(s)	469
SmiMI	CAYNNNNRTG	2 cut(s)	455, 645
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
SphI	GCATGC	1 cut(s)	644
Sse9I	AATT	2 cut(s)	55, 61
SsiI	CCGC	3 cut(s)	5, 32, 392
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	4 cut(s)	67, 325, 373, 673
TaaI	ACNGT	1 cut(s)	587
TaqI	TCGA	3 cut(s)	104, 286, 470
TasI	AATT	2 cut(s)	55, 61
TfiI	GAWTC	3 cut(s)	106, 227, 548
TscAI	CASTG	2 cut(s)	457, 586
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	613
TspRI	CASTG	2 cut(s)	457, 586
XapI	RAATTY	1 cut(s)	55
XceI	RCATGY	2 cut(s)	449, 644
XhoI	CTCGAG	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	139
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.