Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000472.1

Orthogroup ID

OG0002860

Physical Location & Seq

Genomic Coordinates Forward (+)

86930 .. 87845

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000472.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgggcacaagcagggttgatgaggatgctgaacctaaatcgttggggtctgtgtcgtatggtgtagatgatagtgtgggtagtagagttcgttctgattcgggtgttgggatgaggtcaatgacgcctggggtttatggtgtagatgctgtgagtattagtgttcgtggtgaacctggtcttactgtaacagcaggggctggttttccatctcctttacaagctcagactttactaaaccaaagacatgaggtcggagctggcattggctcaagtgtttctactgacttctttagagaaaggtttgtgccttcgaggagtggtgatggtctcccagtcctgaaaggggaatcaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

119

Amino Acids

12.25

Weight (kDa)

5.01

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31470 FvH4_2g31470
malus_domestica	MD08G1066100.v1.1 MD15G1055100.v1.1
prunus_persica	Prupe.1G408300_v2.0.a1
pyrus_communis	pycom08g05480 pycom15g05200
rosa_chinensis	RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331
rosa_laevigata	RLG00000010416
rosa_multiflora	Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750
rosa_rugosa	Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1
rosa_samantha	Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800
rosa_wichuraiana	Rw3G022150 Rw5G025820 Rw6G043740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	346
AhdI	GACNNNNNGTC	1 cut(s)	251
AjnI	CCWGG	2 cut(s)	127, 175
AluBI	AGCT	2 cut(s)	224, 260
AluI	AGCT	2 cut(s)	224, 260
Alw26I	GTCTC	1 cut(s)	335
AlwNI	CAGNNNCTG	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	182, 335
BaeGI	GKGCMC	1 cut(s)	8
BccI	CCATC	2 cut(s)	217, 320
BciT130I	CCWGG	2 cut(s)	129, 177
BcoDI	GTCTC	1 cut(s)	335
Bme1390I	CCNGG	2 cut(s)	129, 177
BmeRI	GACNNNNNGTC	1 cut(s)	251
BmrFI	CCNGG	2 cut(s)	129, 177
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	2 cut(s)	16, 136
BmuI	ACTGGG	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	256
BsaHI	GRCGYC	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	335
BseBI	CCWGG	2 cut(s)	129, 177
BseDI	CCNNGG	1 cut(s)	128
BseGI	GGATG	2 cut(s)	31, 117
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	331
BseSI	GKGCMC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	335
Bso31I	GGTCTC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	238
BspTNI	GGTCTC	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	128
BssNI	GRCGYC	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	129, 177
Bst4CI	ACNGT	1 cut(s)	187
BstACI	GRCGYC	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	31, 117
BstMAI	GTCTC	1 cut(s)	335
BstNI	CCWGG	2 cut(s)	129, 177
BstSCI	CCNGG	2 cut(s)	127, 175
BstSLI	GKGCMC	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	31, 117
Cac8I	GCNNGC	1 cut(s)	262
CaiI	CAGNNNCTG	1 cut(s)	200
CseI	GACGC	1 cut(s)	133
CsiI	ACCWGGT	1 cut(s)	175
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	4 cut(s)	200, 224, 260, 270
CviKI_1	RGCY	4 cut(s)	200, 224, 260, 270
DdeI	CTNAG	1 cut(s)	225
DriI	GACNNNNNGTC	1 cut(s)	251
Eam1105I	GACNNNNNGTC	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	127, 175
FaeI	CATG	1 cut(s)	251
FaiI	YATR	3 cut(s)	60, 138, 249
FatI	CATG	1 cut(s)	247
FokI	GGATG	2 cut(s)	38, 124
HgaI	GACGC	1 cut(s)	133
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	251
HinfI	GANTC	2 cut(s)	98, 350
HphI	GGTGA	2 cut(s)	182, 335
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	3 cut(s)	97, 228, 257
Hpy188III	TCNNGA	1 cut(s)	340
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	321
HpyCH4III	ACNGT	1 cut(s)	187
HpyF3I	CTNAG	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	251
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	9 cut(s)	114, 141, 162, 180, 186, 189, 246, 348, 353
LweI	GCATC	2 cut(s)	16, 136
MabI	ACCWGGT	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	355
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	4 cut(s)	16, 108, 244, 309
MseI	TTAA	1 cut(s)	358
MspR9I	CCNGG	2 cut(s)	129, 177
MvaI	CCWGG	2 cut(s)	129, 177
NlaIII	CATG	1 cut(s)	251
PfeI	GAWTC	2 cut(s)	98, 350
Psp6I	CCWGG	2 cut(s)	127, 175
PspGI	CCWGG	2 cut(s)	127, 175
PsrI	GAACNNNNNNTAC	2 cut(s)	76, 108
PstNI	CAGNNNCTG	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	358
ScrFI	CCNGG	2 cut(s)	129, 177
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	37, 119, 178, 226, 255, 262, 305
SexAI	ACCWGGT	1 cut(s)	175
SfaNI	GCATC	2 cut(s)	16, 136
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	1 cut(s)	355
StyD4I	CCNGG	2 cut(s)	127, 175
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	314
TasI	AATT	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	98, 350
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.