RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g31470 FvH4_2g31470 |
| malus_domestica | MD08G1066100.v1.1 MD15G1055100.v1.1 |
| prunus_persica | Prupe.1G408300_v2.0.a1 |
| pyrus_communis | pycom08g05480 pycom15g05200 |
| rosa_chinensis | RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331 |
| rosa_laevigata | RLG00000010416 |
| rosa_multiflora | Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017 |
| rosa_roxburghii | Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750 |
| rosa_rugosa | Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1 |
| rosa_samantha | Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800 |
| rosa_wichuraiana | Rw3G022150 Rw5G025820 Rw6G043740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 250 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 578 |
| AciI | CCGC | 3 cut(s) | 5, 32, 653 |
| AclWI | GGATC | 6 cut(s) | 2, 15, 659, 672, 742, 755 |
| AcsI | RAATTY | 2 cut(s) | 216, 829 |
| AcuI | CTGAAG | 1 cut(s) | 129 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 41, 298, 544, 578, 871 |
| AgsI | TTSAA | 5 cut(s) | 490, 513, 785, 818, 854 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 449 |
| AjnI | CCWGG | 2 cut(s) | 325, 373 |
| AluBI | AGCT | 6 cut(s) | 138, 422, 458, 695, 712, 850 |
| AluI | AGCT | 6 cut(s) | 138, 422, 458, 695, 712, 850 |
| Alw21I | GWGCWC | 1 cut(s) | 1039 |
| Alw26I | GTCTC | 2 cut(s) | 289, 533 |
| AlwI | GGATC | 6 cut(s) | 2, 15, 659, 672, 742, 755 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 398 |
| AoxI | GGCC | 1 cut(s) | 1102 |
| ApeKI | GCWGC | 2 cut(s) | 26, 791 |
| ApoI | RAATTY | 2 cut(s) | 216, 829 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 139, 220 |
| AspLEI | GCGC | 2 cut(s) | 470, 1083 |
| AsuHPI | GGTGA | 3 cut(s) | 253, 380, 533 |
| AsuII | TTCGAA | 1 cut(s) | 286 |
| BamHI | GGATCC | 3 cut(s) | 7, 664, 747 |
| BanII | GRGCYC | 1 cut(s) | 900 |
| Bbv12I | GWGCWC | 1 cut(s) | 1039 |
| BbvI | GCAGC | 2 cut(s) | 13, 803 |
| BccI | CCATC | 4 cut(s) | 100, 415, 518, 965 |
| BceAI | ACGGC | 1 cut(s) | 169 |
| BciT130I | CCWGG | 2 cut(s) | 327, 375 |
| BcoDI | GTCTC | 2 cut(s) | 289, 533 |
| BfaI | CTAG | 3 cut(s) | 255, 615, 1095 |
| BisI | GCNGC | 2 cut(s) | 27, 792 |
| BlsI | GCNGC | 2 cut(s) | 28, 793 |
| Bme1390I | CCNGG | 2 cut(s) | 327, 375 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 449 |
| BmiI | GGNNCC | 4 cut(s) | 9, 612, 666, 749 |
| BmrFI | CCNGG | 2 cut(s) | 327, 375 |
| BmrI | ACTGGG | 1 cut(s) | 527 |
| BmsI | GCATC | 2 cut(s) | 312, 778 |
| BmuI | ACTGGG | 1 cut(s) | 527 |
| Bpu10I | CCTNAGC | 1 cut(s) | 870 |
| Bpu14I | TTCGAA | 1 cut(s) | 286 |
| BpuEI | CTTGAG | 2 cut(s) | 762, 1023 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1150 |
| BsaI | GGTCTC | 1 cut(s) | 533 |
| BsaJI | CCNNGG | 2 cut(s) | 326, 1105 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 41, 298, 544, 578, 871 |
| Bse1I | ACTGG | 1 cut(s) | 533 |
| Bse3DI | GCAATG | 3 cut(s) | 642, 992, 1028 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1150 |
| BseBI | CCWGG | 2 cut(s) | 327, 375 |
| BseDI | CCNNGG | 2 cut(s) | 326, 1105 |
| BseGI | GGATG | 1 cut(s) | 80 |
| BseJI | GATNNNNATC | 1 cut(s) | 1150 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 41, 298, 544, 578, 871 |
| BseMI | GCAATG | 3 cut(s) | 642, 992, 1028 |
| BseMII | CTCAG | 1 cut(s) | 437 |
| BseNI | ACTGG | 1 cut(s) | 533 |
| BseXI | GCAGC | 2 cut(s) | 13, 803 |
| BshFI | GGCC | 1 cut(s) | 1104 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1039 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 41, 298, 544, 578, 871 |
| BsmAI | GTCTC | 2 cut(s) | 289, 533 |
| BsnI | GGCC | 1 cut(s) | 1104 |
| Bso31I | GGTCTC | 1 cut(s) | 533 |
| Bsp119I | TTCGAA | 1 cut(s) | 286 |
| Bsp1286I | GDGCHC | 2 cut(s) | 900, 1039 |
| Bsp143I | GATC | 3 cut(s) | 7, 664, 747 |
| BspACI | CCGC | 3 cut(s) | 5, 32, 653 |
| BspANI | GGCC | 1 cut(s) | 1104 |
| BspCNI | CTCAG | 1 cut(s) | 436 |
| BspLI | GGNNCC | 4 cut(s) | 9, 612, 666, 749 |
| BspPI | GGATC | 6 cut(s) | 2, 15, 659, 672, 742, 755 |
| BspQI | GCTCTTC | 1 cut(s) | 803 |
| BspT104I | TTCGAA | 1 cut(s) | 286 |
| BspTNI | GGTCTC | 1 cut(s) | 533 |
| BsrDI | GCAATG | 3 cut(s) | 642, 992, 1028 |
| BsrI | ACTGG | 1 cut(s) | 533 |
| BssECI | CCNNGG | 2 cut(s) | 326, 1105 |
| BssMI | GATC | 3 cut(s) | 7, 664, 747 |
| BssT1I | CCWWGG | 1 cut(s) | 1105 |
| Bst2UI | CCWGG | 2 cut(s) | 327, 375 |
| Bst4CI | ACNGT | 3 cut(s) | 247, 385, 623 |
| Bst6I | CTCTTC | 1 cut(s) | 803 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 989, 994 |
| BstBI | TTCGAA | 1 cut(s) | 286 |
| BstC8I | GCNNGC | 4 cut(s) | 460, 990, 1035, 1085 |
| BstDEI | CTNAG | 3 cut(s) | 158, 423, 870 |
| BstF5I | GGATG | 1 cut(s) | 80 |
| BstHHI | GCGC | 2 cut(s) | 470, 1083 |
| BstKTI | GATC | 3 cut(s) | 10, 667, 750 |
| BstMAI | GTCTC | 2 cut(s) | 289, 533 |
| BstMBI | GATC | 3 cut(s) | 7, 664, 747 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 989, 994 |
| BstNI | CCWGG | 2 cut(s) | 327, 375 |
| BstNSI | RCATGY | 1 cut(s) | 992 |
| BstSCI | CCNGG | 2 cut(s) | 325, 373 |
| BstV1I | GCAGC | 2 cut(s) | 13, 803 |
| BstX2I | RGATCY | 3 cut(s) | 7, 664, 747 |
| BstYI | RGATCY | 3 cut(s) | 7, 664, 747 |
| BsuRI | GGCC | 1 cut(s) | 1104 |
| BtgZI | GCGATG | 1 cut(s) | 323 |
| BtsCI | GGATG | 1 cut(s) | 80 |
| BtsIMutI | CAGTG | 2 cut(s) | 364, 628 |
| Cac8I | GCNNGC | 4 cut(s) | 460, 990, 1035, 1085 |
| CaiI | CAGNNNCTG | 1 cut(s) | 398 |
| CfoI | GCGC | 2 cut(s) | 470, 1083 |
| CseI | GACGC | 1 cut(s) | 956 |
| CsiI | ACCWGGT | 1 cut(s) | 373 |
| CviAII | CATG | 6 cut(s) | 365, 446, 800, 866, 964, 989 |
| DdeI | CTNAG | 3 cut(s) | 158, 423, 870 |
| DpnI | GATC | 3 cut(s) | 9, 666, 749 |
| DpnII | GATC | 3 cut(s) | 7, 664, 747 |
| DraI | TTTAAA | 3 cut(s) | 586, 1065, 1150 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 250 |
| DriI | GACNNNNNGTC | 1 cut(s) | 449 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 250 |
| Eam1104I | CTCTTC | 1 cut(s) | 803 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 449 |
| EarI | CTCTTC | 1 cut(s) | 803 |
| EciI | GGCGGA | 2 cut(s) | 20, 21 |
| Eco130I | CCWWGG | 1 cut(s) | 1105 |
| Eco147I | AGGCCT | 1 cut(s) | 1104 |
| Eco24I | GRGCYC | 1 cut(s) | 900 |
| Eco31I | GGTCTC | 1 cut(s) | 533 |
| Eco57I | CTGAAG | 1 cut(s) | 129 |
| EcoRI | GAATTC | 2 cut(s) | 216, 829 |
| EcoRII | CCWGG | 2 cut(s) | 325, 373 |
| EcoT14I | CCWWGG | 1 cut(s) | 1105 |
| EcoT22I | ATGCAT | 1 cut(s) | 994 |
| EcoT38I | GRGCYC | 1 cut(s) | 900 |
| ErhI | CCWWGG | 1 cut(s) | 1105 |
| FaeI | CATG | 6 cut(s) | 368, 449, 803, 869, 967, 992 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 127, 159 |
| FatI | CATG | 6 cut(s) | 364, 445, 799, 865, 963, 988 |
| Fnu4HI | GCNGC | 2 cut(s) | 27, 792 |
| FokI | GGATG | 1 cut(s) | 67 |
| FriOI | GRGCYC | 1 cut(s) | 900 |
| Fsp4HI | GCNGC | 2 cut(s) | 27, 792 |
| FspBI | CTAG | 3 cut(s) | 255, 615, 1095 |
| GlaI | GCGC | 2 cut(s) | 469, 1082 |
| GluI | GCNGC | 2 cut(s) | 27, 792 |
| HaeIII | GGCC | 1 cut(s) | 1104 |
| HgaI | GACGC | 1 cut(s) | 956 |
| HhaI | GCGC | 2 cut(s) | 470, 1083 |
| Hin1II | CATG | 6 cut(s) | 368, 449, 803, 869, 967, 992 |
| Hin6I | GCGC | 2 cut(s) | 468, 1081 |
| HinP1I | GCGC | 2 cut(s) | 468, 1081 |
| HindIII | AAGCTT | 1 cut(s) | 710 |
| HinfI | GANTC | 6 cut(s) | 106, 227, 548, 731, 887, 1126 |
| HphI | GGTGA | 3 cut(s) | 253, 380, 533 |
| Hpy166II | GTNNAC | 2 cut(s) | 371, 604 |
| Hpy188I | TCNGA | 5 cut(s) | 85, 148, 226, 426, 455 |
| Hpy188III | TCNNGA | 3 cut(s) | 538, 785, 854 |
| Hpy8I | GTNNAC | 2 cut(s) | 371, 604 |
| Hpy99I | CGWCG | 1 cut(s) | 950 |
| HpyAV | CCTTC | 3 cut(s) | 519, 746, 824 |
| HpyCH4III | ACNGT | 3 cut(s) | 247, 385, 623 |
| HpyCH4V | TGCA | 4 cut(s) | 758, 791, 932, 992 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 989, 994 |
| HpyF3I | CTNAG | 3 cut(s) | 158, 423, 870 |
| Hsp92II | CATG | 6 cut(s) | 368, 449, 803, 869, 967, 992 |
| HspAI | GCGC | 2 cut(s) | 468, 1081 |
| Kzo9I | GATC | 3 cut(s) | 7, 664, 747 |
| LguI | GCTCTTC | 1 cut(s) | 803 |
| LmnI | GCTCC | 3 cut(s) | 34, 455, 610 |
| Lsp1109I | GCAGC | 2 cut(s) | 13, 803 |
| LweI | GCATC | 2 cut(s) | 312, 778 |
| MabI | ACCWGGT | 1 cut(s) | 373 |
| MaeI | CTAG | 3 cut(s) | 255, 615, 1095 |
| MaeIII | GTNAC | 5 cut(s) | 71, 96, 241, 385, 704 |
| MalI | GATC | 3 cut(s) | 9, 666, 749 |
| MboI | GATC | 3 cut(s) | 7, 664, 747 |
| MboII | GAAGA | 6 cut(s) | 135, 287, 638, 820, 1081, 1084 |
| MfeI | CAATTG | 1 cut(s) | 1089 |
| MflI | RGATCY | 3 cut(s) | 7, 664, 747 |
| MhlI | GDGCHC | 2 cut(s) | 900, 1039 |
| MluCI | AATT | 4 cut(s) | 61, 216, 829, 1089 |
| MmeI | TCCRAC | 1 cut(s) | 433 |
| MnlI | CCTC | 8 cut(s) | 35, 306, 442, 738, 786, 871, 1094, 1140 |
| Mph1103I | ATGCAT | 1 cut(s) | 994 |
| MroXI | GAANNNNTTC | 2 cut(s) | 139, 220 |
| MseI | TTAA | 4 cut(s) | 585, 680, 1064, 1149 |
| MspR9I | CCNGG | 2 cut(s) | 327, 375 |
| MunI | CAATTG | 1 cut(s) | 1089 |
| MvaI | CCWGG | 2 cut(s) | 327, 375 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 989, 994 |
| NdeII | GATC | 3 cut(s) | 7, 664, 747 |
| NlaIII | CATG | 6 cut(s) | 368, 449, 803, 869, 967, 992 |
| NlaIV | GGNNCC | 4 cut(s) | 9, 612, 666, 749 |
| NmuCI | GTSAC | 1 cut(s) | 241 |
| NsiI | ATGCAT | 1 cut(s) | 994 |
| NspI | RCATGY | 1 cut(s) | 992 |
| NspV | TTCGAA | 1 cut(s) | 286 |
| PaeI | GCATGC | 1 cut(s) | 992 |
| PceI | AGGCCT | 1 cut(s) | 1104 |
| PciSI | GCTCTTC | 1 cut(s) | 803 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 101 |
| PdmI | GAANNNNTTC | 2 cut(s) | 139, 220 |
| PfeI | GAWTC | 6 cut(s) | 106, 227, 548, 731, 887, 1126 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 578 |
| PkrI | GCNGC | 2 cut(s) | 28, 793 |
| Psp6I | CCWGG | 2 cut(s) | 325, 373 |
| PspGI | CCWGG | 2 cut(s) | 325, 373 |
| PspN4I | GGNNCC | 4 cut(s) | 9, 612, 666, 749 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 205, 237 |
| PstNI | CAGNNNCTG | 1 cut(s) | 398 |
| PsuI | RGATCY | 3 cut(s) | 7, 664, 747 |
| SapI | GCTCTTC | 1 cut(s) | 803 |
| SaqAI | TTAA | 4 cut(s) | 585, 680, 1064, 1149 |
| SatI | GCNGC | 2 cut(s) | 27, 792 |
| Sau3AI | GATC | 3 cut(s) | 7, 664, 747 |
| ScrFI | CCNGG | 2 cut(s) | 327, 375 |
| SduI | GDGCHC | 2 cut(s) | 900, 1039 |
| SexAI | ACCWGGT | 1 cut(s) | 373 |
| SfaNI | GCATC | 2 cut(s) | 312, 778 |
| SfuI | TTCGAA | 1 cut(s) | 286 |
| SmiI | ATTTAAAT | 1 cut(s) | 1150 |
| SmlI | CTYRAG | 2 cut(s) | 777, 1038 |
| SmoI | CTYRAG | 2 cut(s) | 777, 1038 |
| SphI | GCATGC | 1 cut(s) | 992 |
| Sse9I | AATT | 4 cut(s) | 61, 216, 829, 1089 |
| SseBI | AGGCCT | 1 cut(s) | 1104 |
| SsiI | CCGC | 3 cut(s) | 5, 32, 653 |
| SspMI | CTAG | 3 cut(s) | 255, 615, 1095 |
| StuI | AGGCCT | 1 cut(s) | 1104 |
| StyD4I | CCNGG | 2 cut(s) | 325, 373 |
| StyI | CCWWGG | 1 cut(s) | 1105 |
| SwaI | ATTTAAAT | 1 cut(s) | 1150 |
| TaaI | ACNGT | 3 cut(s) | 247, 385, 623 |
| TaqI | TCGA | 3 cut(s) | 104, 286, 827 |
| TasI | AATT | 4 cut(s) | 61, 216, 829, 1089 |
| TfiI | GAWTC | 6 cut(s) | 106, 227, 548, 731, 887, 1126 |
| Tru1I | TTAA | 4 cut(s) | 585, 680, 1064, 1149 |
| Tru9I | TTAA | 4 cut(s) | 585, 680, 1064, 1149 |
| TscAI | CASTG | 2 cut(s) | 364, 628 |
| TseFI | GTSAC | 1 cut(s) | 241 |
| TseI | GCWGC | 2 cut(s) | 26, 791 |
| Tsp45I | GTSAC | 1 cut(s) | 241 |
| TspDTI | ATGAA | 4 cut(s) | 353, 565, 822, 879 |
| TspRI | CASTG | 2 cut(s) | 364, 628 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 578 |
| XapI | RAATTY | 2 cut(s) | 216, 829 |
| XceI | RCATGY | 1 cut(s) | 992 |
| XmnI | GAANNNNTTC | 2 cut(s) | 139, 220 |
| XspI | CTAG | 3 cut(s) | 255, 615, 1095 |
| Zsp2I | ATGCAT | 1 cut(s) | 994 |