Rw5G025820

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002860
Physical Location & Seq
Forward (+)
36954851 .. 36968925
14075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G025820.1

Sequence Viewer

Length: 885 bp
ATGGCGGATCCCTACCATAGATACGCTGCTCCGCCGGAACGAGCAAAGTCCAATTTTCCTAGTTACTTATCATCCGAAGCACCATCGTTACTATCGAATCACACTTTTGCCCCTACTGATTTGAGAACCTATTCTTCGGATTTTCTGCTTAGAGATGTAAGAAATGATAGTGTGGGTAGTAGAGTTCGTTCTGATTCGGGTGTTAGGGTGACAGCAGGGTCTAGCCTATATGATCCTTTGGAAGATACTTATCGAAGCCAGAGACATGATATTGCGGTGAAATTGTGTTGTTCTATCTGTTTTCATATGAGGTCAATGATGCCTGGGGTTTATGGTGTAGATGCTGTGAGTGTTAGTGTTCATGGTGAACCTGGTCTTACTGTAACAGCAGGGGCTGGTTTTCCAACTCCTTTACAAGCTCAGACTTTACCAAACCAAAGACATGAGGTCGGAGCTGGCATTGGCTCAAGTGTTTCTACTGACTTTAGTAGAGAAAGGTATGTGCCTTCAAGGAGTGGTGATGGTCTTCCAGTCCTAAAAGGGGAATCATACATTTTGTTTGTGGATGGTCTTCCCACTGACTATACCAGAAGAGAAGTAGGCCATCTATTTCGTCCATTCATTGGTTTTAAAGAAATCAAAGTAGTTCACAAGGAGCCTAGATGCCTAAGTGCACTCATTTGCCTAAGTGGAGATAAGGCAATGGTTTTATGCTTTGCAGAATTTGTGGATCGAAAGTGTGCTTTGACAGCTATGGAAGCTCTACAAGGTTACAAGTTTGATGACAAGAAACCTGATTCCCTTCCATTGTGGATCCACTTTGCACATTTTCCTTTTCGTCTACCATCTGATTCTGATCAGAAACGAACTGGAATCCGACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

294

Amino Acids

32.61

Weight (kDa)

8.13

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 186 - 264 1.8e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 217
AccB7I CCANNNNNTGG 1 cut(s) 623
AccI GTMKAC 1 cut(s) 841
AciI CCGC 3 cut(s) 5, 32, 275
AclWI GGATC 6 cut(s) 2, 15, 227, 738, 808, 821
AcsI RAATTY 1 cut(s) 722
AfiI CCNNNNNNNGG 2 cut(s) 541, 623
AgsI TTSAA 1 cut(s) 510
AhdI GACNNNNNGTC 1 cut(s) 446
AjnI CCWGG 2 cut(s) 322, 370
AluBI AGCT 4 cut(s) 419, 455, 752, 761
AluI AGCT 4 cut(s) 419, 455, 752, 761
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 1 cut(s) 256
Alw44I GTGCAC 1 cut(s) 672
AlwI GGATC 6 cut(s) 2, 15, 227, 738, 808, 821
AlwNI CAGNNNCTG 1 cut(s) 395
AoxI GGCC 1 cut(s) 601
ApaLI GTGCAC 1 cut(s) 672
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 722
Asp700I GAANNNNTTC 1 cut(s) 130
AsuHPI GGTGA 4 cut(s) 220, 289, 377, 530
BaeGI GKGCMC 1 cut(s) 676
BamHI GGATCC 2 cut(s) 7, 813
BbsI GAAGAC 2 cut(s) 518, 563
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 1 cut(s) 13
BccI CCATC 5 cut(s) 91, 515, 560, 612, 853
BciT130I CCWGG 2 cut(s) 324, 372
BclI TGATCA 1 cut(s) 856
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 3 cut(s) 60, 222, 660
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 2 cut(s) 324, 372
BmeRI GACNNNNNGTC 1 cut(s) 446
BmiI GGNNCC 3 cut(s) 9, 657, 815
BmrFI CCNGG 2 cut(s) 324, 372
BmsI GCATC 3 cut(s) 309, 331, 653
BpiI GAAGAC 2 cut(s) 518, 563
BpuEI CTTGAG 1 cut(s) 451
BsaBI GATNNNNATC 2 cut(s) 249, 855
BsaJI CCNNGG 1 cut(s) 323
Bsc4I CCNNNNNNNGG 2 cut(s) 541, 623
Bse1I ACTGG 2 cut(s) 530, 874
Bse3DI GCAATG 1 cut(s) 708
Bse8I GATNNNNATC 2 cut(s) 249, 855
BseBI CCWGG 2 cut(s) 324, 372
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 2 cut(s) 71, 571
BseJI GATNNNNATC 2 cut(s) 249, 855
BseLI CCNNNNNNNGG 2 cut(s) 541, 623
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 2 cut(s) 530, 874
BseSI GKGCMC 1 cut(s) 676
BseXI GCAGC 1 cut(s) 13
BshFI GGCC 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 676
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 541, 623
BsmAI GTCTC 1 cut(s) 256
BsnI GGCC 1 cut(s) 603
Bsp1286I GDGCHC 1 cut(s) 676
Bsp143I GATC 5 cut(s) 7, 232, 730, 813, 856
BspACI CCGC 3 cut(s) 5, 32, 275
BspANI GGCC 1 cut(s) 603
BspCNI CTCAG 1 cut(s) 433
BspLI GGNNCC 3 cut(s) 9, 657, 815
BspPI GGATC 6 cut(s) 2, 15, 227, 738, 808, 821
BsrDI GCAATG 1 cut(s) 708
BsrI ACTGG 2 cut(s) 530, 874
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 5 cut(s) 7, 232, 730, 813, 856
Bst2UI CCWGG 2 cut(s) 324, 372
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 1 cut(s) 586
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 4 cut(s) 149, 420, 668, 686
BstF5I GGATG 2 cut(s) 71, 571
BstKTI GATC 5 cut(s) 10, 235, 733, 816, 859
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 5 cut(s) 7, 232, 730, 813, 856
BstMWI GCNNNNNNNGC 2 cut(s) 749, 758
BstNI CCWGG 2 cut(s) 324, 372
BstSCI CCNGG 2 cut(s) 322, 370
BstSLI GKGCMC 1 cut(s) 676
BstV1I GCAGC 1 cut(s) 13
BstV2I GAAGAC 2 cut(s) 518, 563
BstX2I RGATCY 2 cut(s) 7, 813
BstYI RGATCY 2 cut(s) 7, 813
BsuRI GGCC 1 cut(s) 603
BtsCI GGATG 2 cut(s) 71, 571
BtsIMutI CAGTG 2 cut(s) 576, 880
Cac8I GCNNGC 1 cut(s) 457
CaiI CAGNNNCTG 1 cut(s) 395
CsiI ACCWGGT 1 cut(s) 370
CviAII CATG 3 cut(s) 266, 362, 443
DdeI CTNAG 4 cut(s) 149, 420, 668, 686
DpnI GATC 5 cut(s) 9, 234, 732, 815, 858
DpnII GATC 5 cut(s) 7, 232, 730, 813, 856
DraI TTTAAA 1 cut(s) 631
DrdI GACNNNNNNGTC 1 cut(s) 217
DriI GACNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 586
Eam1105I GACNNNNNGTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 586
EciI GGCGGA 2 cut(s) 20, 21
EcoRII CCWGG 2 cut(s) 322, 370
FaeI CATG 3 cut(s) 269, 365, 446
FatI CATG 3 cut(s) 265, 361, 442
FauNDI CATATG 1 cut(s) 306
FbaI TGATCA 1 cut(s) 856
FblI GTMKAC 1 cut(s) 841
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 2 cut(s) 58, 578
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 3 cut(s) 60, 222, 660
GluI GCNGC 1 cut(s) 27
HaeIII GGCC 1 cut(s) 603
HapII CCGG 1 cut(s) 35
Hin1II CATG 3 cut(s) 269, 365, 446
HinfI GANTC 6 cut(s) 97, 194, 545, 797, 851, 873
HpaII CCGG 1 cut(s) 35
HphI GGTGA 4 cut(s) 220, 289, 377, 530
Hpy166II GTNNAC 4 cut(s) 368, 649, 674, 842
Hpy188I TCNGA 9 cut(s) 76, 139, 193, 423, 452, 850, 856, 861, 878
Hpy8I GTNNAC 4 cut(s) 368, 649, 674, 842
HpyAV CCTTC 2 cut(s) 516, 812
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4V TGCA 3 cut(s) 674, 719, 824
HpyF10VI GCNNNNNNNGC 2 cut(s) 749, 758
HpyF3I CTNAG 4 cut(s) 149, 420, 668, 686
Hsp92II CATG 3 cut(s) 269, 365, 446
Ksp22I TGATCA 1 cut(s) 856
Kzo9I GATC 5 cut(s) 7, 232, 730, 813, 856
LmnI GCTCC 3 cut(s) 34, 452, 655
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 3 cut(s) 309, 331, 653
MabI ACCWGGT 1 cut(s) 370
MaeI CTAG 3 cut(s) 60, 222, 660
MaeIII GTNAC 5 cut(s) 62, 87, 208, 382, 770
MalI GATC 5 cut(s) 9, 234, 732, 815, 858
MboI GATC 5 cut(s) 7, 232, 730, 813, 856
MboII GAAGA 5 cut(s) 126, 254, 518, 563, 603
MflI RGATCY 2 cut(s) 7, 813
MhlI GDGCHC 1 cut(s) 676
MluCI AATT 3 cut(s) 52, 281, 722
MmeI TCCRAC 2 cut(s) 428, 430
MnlI CCTC 2 cut(s) 303, 439
MroXI GAANNNNTTC 1 cut(s) 130
MseI TTAA 1 cut(s) 630
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 2 cut(s) 324, 372
MvaI CCWGG 2 cut(s) 324, 372
MwoI GCNNNNNNNGC 2 cut(s) 749, 758
NdeI CATATG 1 cut(s) 306
NdeII GATC 5 cut(s) 7, 232, 730, 813, 856
NlaIII CATG 3 cut(s) 269, 365, 446
NlaIV GGNNCC 3 cut(s) 9, 657, 815
NmuCI GTSAC 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 130
PfeI GAWTC 6 cut(s) 97, 194, 545, 797, 851, 873
PflMI CCANNNNNTGG 1 cut(s) 623
PkrI GCNGC 1 cut(s) 28
Psp6I CCWGG 2 cut(s) 322, 370
PspGI CCWGG 2 cut(s) 322, 370
PspN4I GGNNCC 3 cut(s) 9, 657, 815
PsrI GAACNNNNNNTAC 2 cut(s) 172, 204
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 2 cut(s) 7, 813
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 5 cut(s) 7, 232, 730, 813, 856
ScrFI CCNGG 2 cut(s) 324, 372
SduI GDGCHC 1 cut(s) 676
SexAI ACCWGGT 1 cut(s) 370
SfaNI GCATC 3 cut(s) 309, 331, 653
SmlI CTYRAG 1 cut(s) 466
SmoI CTYRAG 1 cut(s) 466
Sse9I AATT 3 cut(s) 52, 281, 722
SsiI CCGC 3 cut(s) 5, 32, 275
SspMI CTAG 3 cut(s) 60, 222, 660
StyD4I CCNGG 2 cut(s) 322, 370
TaaI ACNGT 1 cut(s) 382
TaqI TCGA 3 cut(s) 95, 253, 733
TasI AATT 3 cut(s) 52, 281, 722
TfiI GAWTC 6 cut(s) 97, 194, 545, 797, 851, 873
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 1 cut(s) 583
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 3 cut(s) 293, 350, 610
TspRI CASTG 1 cut(s) 583
Van91I CCANNNNNTGG 1 cut(s) 623
VneI GTGCAC 1 cut(s) 672
XapI RAATTY 1 cut(s) 722
XmiI GTMKAC 1 cut(s) 841
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 3 cut(s) 60, 222, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.