RLG00000010416

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002860
Physical Location & Seq
Forward (+)
1449164 .. 1451270
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010416

Sequence Viewer

Length: 1026 bp
ATGATCTTCCCACCATTACCACTCAAACTGCGTCGTTTCGATCTGGACCTGCCAAGTGTGTACAGAAGTACGTACTCCAAAGTCCAAAGCAAAAGAGCTTCGCTTCGGAGTTTGGAGTTCGGACTGTTCGCTTCGCCGGAGCATCTTACGGTGCAAGCCATGGCGGATCCCTACCATAGATACGCTGCTCCGCCGGAACGAGGTAGTGTAGCAAAGTCCAATTTTCCTGGTTACTTATCATCCGAAGCACCATCGTTGCTTTCGAATCACACTTTTGCCCCTACTGATTTGAGAAGCTATTCTTCGGATTTTCTGCTGAGAGATAAATCGTTGGGGTCTGTGCCATATGGTGTAGACGATAGTGTGGGTAGTAGAGTTCGTTCTGATTCGGGTGTTGGGGTGACAGCAGGGTGTAGCCTATATGATCCTTTGGAAGATACTTATCGAAGCCAGAGACAGGATATTGCGATGAGGTCAATGACGCCTGGGGTTTATGGTGTAGATGCTGTGAGTGTTAGTGTTCGTGGTGAACCTGGTCTTGCTGTAACGGCGGGGGCTGGCTATCCATCTCCTTTACGAGCTCAGACTTTACTAACCCAAAGACATGAGGTCGGAGCTGGCATTGGCTCAAGTGTTTCTACTGACTTCAGTAGAGAAAGGTCTGTGCCTTCGAGGAGTGGTGATGGTCTCCCAGTCCTGAAAGGGGAATCAAACGTTTTGTTTGTGGATGGACTTCCCACTGACTGTACCAGAAGAGAAGTAGGCCATCTATTTCGTCCATTCATTGGCTTTAAAGAAATCAAAGTAGTTCACAAGGAGCCTAGACGCAGTGGAGATAAGGCAATGGTTTTATGCTTTGTGGAGTTTGTGGATCCAAAGTGTGCTTTGACTGCTATGGAAGCTCTACAAGGTTACAAGTTTGATGACAAGAAACCTGATTCCCTTCCATTGAGGATCCACTTTGCACATTTTCCTTTCCGTCTACCATCTGATTCCGATCAGAAACGAATTGGAATCCGACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

342

Amino Acids

37.49

Weight (kDa)

9.07

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 240 - 311 9.2e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 57
AccB7I CCANNNNNTGG 1 cut(s) 785
AccI GTMKAC 2 cut(s) 354, 982
AciI CCGC 3 cut(s) 164, 191, 551
AclI AACGTT 1 cut(s) 714
AclWI GGATC 7 cut(s) 161, 174, 419, 866, 879, 949, 962
AcuI CTGAAG 1 cut(s) 631
AcyI GRCGYC 1 cut(s) 482
AfaI GTAC 4 cut(s) 62, 70, 74, 748
AfiI CCNNNNNNNGG 4 cut(s) 200, 457, 703, 785
AhdI GACNNNNNGTC 1 cut(s) 608
AjnI CCWGG 3 cut(s) 226, 484, 532
AluBI AGCT 5 cut(s) 98, 297, 581, 617, 902
AluI AGCT 5 cut(s) 98, 297, 581, 617, 902
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 2 cut(s) 448, 692
AlwI GGATC 7 cut(s) 161, 174, 419, 866, 879, 949, 962
AoxI GGCC 1 cut(s) 763
ApeKI GCWGC 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 298
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 3 cut(s) 412, 539, 692
AsuII TTCGAA 1 cut(s) 263
AvaII GGWCC 1 cut(s) 46
BamHI GGATCC 3 cut(s) 166, 871, 954
BanII GRGCYC 1 cut(s) 583
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 1 cut(s) 172
BccI CCATC 6 cut(s) 259, 574, 677, 722, 774, 994
BceAI ACGGC 1 cut(s) 564
BciT130I CCWGG 3 cut(s) 228, 486, 534
BcoDI GTCTC 2 cut(s) 448, 692
BfaI CTAG 1 cut(s) 822
BfuAI ACCTGC 1 cut(s) 57
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 3 cut(s) 228, 486, 534
Bme18I GGWCC 1 cut(s) 46
BmeRI GACNNNNNGTC 1 cut(s) 608
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 4 cut(s) 168, 819, 873, 956
BmrFI CCNGG 3 cut(s) 228, 486, 534
BmrI ACTGGG 1 cut(s) 686
BmsI GCATC 2 cut(s) 151, 493
BmuI ACTGGG 1 cut(s) 686
Bpu14I TTCGAA 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 613
BsaAI YACGTR 1 cut(s) 72
BsaBI GATNNNNATC 2 cut(s) 441, 996
BsaHI GRCGYC 1 cut(s) 482
BsaI GGTCTC 1 cut(s) 692
BsaJI CCNNGG 2 cut(s) 159, 485
Bsc4I CCNNNNNNNGG 4 cut(s) 200, 457, 703, 785
Bse1I ACTGG 1 cut(s) 692
Bse3DI GCAATG 1 cut(s) 849
Bse8I GATNNNNATC 2 cut(s) 441, 996
BseBI CCWGG 3 cut(s) 228, 486, 534
BseDI CCNNGG 2 cut(s) 159, 485
BseGI GGATG 2 cut(s) 239, 733
BseJI GATNNNNATC 2 cut(s) 441, 996
BseLI CCNNNNNNNGG 4 cut(s) 200, 457, 703, 785
BseMI GCAATG 1 cut(s) 849
BseMII CTCAG 2 cut(s) 308, 596
BseNI ACTGG 1 cut(s) 692
BseRI GAGGAG 1 cut(s) 688
BseXI GCAGC 1 cut(s) 172
BshFI GGCC 1 cut(s) 765
BsiHKAI GWGCWC 1 cut(s) 583
BsiSI CCGG 2 cut(s) 137, 194
BslI CCNNNNNNNGG 4 cut(s) 200, 457, 703, 785
BsmAI GTCTC 2 cut(s) 448, 692
BsnI GGCC 1 cut(s) 765
Bso31I GGTCTC 1 cut(s) 692
Bsp119I TTCGAA 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 583
Bsp1407I TGTACA 1 cut(s) 60
Bsp143I GATC 7 cut(s) 3, 40, 166, 424, 871, 954, 997
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 3 cut(s) 164, 191, 551
BspANI GGCC 1 cut(s) 765
BspCNI CTCAG 2 cut(s) 309, 595
BspLI GGNNCC 4 cut(s) 168, 819, 873, 956
BspMI ACCTGC 1 cut(s) 57
BspPI GGATC 7 cut(s) 161, 174, 419, 866, 879, 949, 962
BspT104I TTCGAA 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 692
BsrDI GCAATG 1 cut(s) 849
BsrGI TGTACA 1 cut(s) 60
BsrI ACTGG 1 cut(s) 692
BssECI CCNNGG 2 cut(s) 159, 485
BssMI GATC 7 cut(s) 3, 40, 166, 424, 871, 954, 997
BssNI GRCGYC 1 cut(s) 482
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 3 cut(s) 228, 486, 534
Bst4CI ACNGT 3 cut(s) 126, 151, 746
Bst6I CTCTTC 1 cut(s) 748
BstACI GRCGYC 1 cut(s) 482
BstAUI TGTACA 1 cut(s) 60
BstBAI YACGTR 1 cut(s) 72
BstBI TTCGAA 1 cut(s) 263
BstC8I GCNNGC 3 cut(s) 156, 559, 619
BstDEI CTNAG 2 cut(s) 317, 582
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 2 cut(s) 239, 733
BstKTI GATC 7 cut(s) 6, 43, 169, 427, 874, 957, 1000
BstMAI GTCTC 2 cut(s) 448, 692
BstMBI GATC 7 cut(s) 3, 40, 166, 424, 871, 954, 997
BstMWI GCNNNNNNNGC 3 cut(s) 548, 890, 899
BstNI CCWGG 3 cut(s) 228, 486, 534
BstSCI CCNGG 3 cut(s) 226, 484, 532
BstSNI TACGTA 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 172
BstX2I RGATCY 3 cut(s) 166, 871, 954
BstYI RGATCY 3 cut(s) 166, 871, 954
BsuRI GGCC 1 cut(s) 765
BtgI CCRYGG 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 482
BtsCI GGATG 2 cut(s) 239, 733
BtsI GCAGTG 1 cut(s) 835
BtsIMutI CAGTG 3 cut(s) 738, 835, 1021
BveI ACCTGC 1 cut(s) 57
Cac8I GCNNGC 3 cut(s) 156, 559, 619
Cfr13I GGNCC 1 cut(s) 46
CseI GACGC 3 cut(s) 20, 490, 834
CsiI ACCWGGT 1 cut(s) 532
Csp6I GTAC 4 cut(s) 61, 69, 73, 747
CviAII CATG 2 cut(s) 160, 605
CviQI GTAC 4 cut(s) 61, 69, 73, 747
DdeI CTNAG 2 cut(s) 317, 582
DpnI GATC 7 cut(s) 5, 42, 168, 426, 873, 956, 999
DpnII GATC 7 cut(s) 3, 40, 166, 424, 871, 954, 997
DraI TTTAAA 1 cut(s) 793
DriI GACNNNNNGTC 1 cut(s) 608
Eam1104I CTCTTC 1 cut(s) 748
Eam1105I GACNNNNNGTC 1 cut(s) 608
EarI CTCTTC 1 cut(s) 748
EciI GGCGGA 2 cut(s) 179, 180
Ecl136II GAGCTC 1 cut(s) 581
Eco105I TACGTA 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 583
Eco31I GGTCTC 1 cut(s) 692
Eco47I GGWCC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 581
Eco57I CTGAAG 1 cut(s) 631
EcoICRI GAGCTC 1 cut(s) 581
EcoRII CCWGG 3 cut(s) 226, 484, 532
EcoT14I CCWWGG 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 583
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 2 cut(s) 163, 608
FalI AAGNNNNNCTT 2 cut(s) 286, 318
FatI CATG 2 cut(s) 159, 604
FauI CCCGC 1 cut(s) 544
FauNDI CATATG 1 cut(s) 346
FblI GTMKAC 2 cut(s) 354, 982
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 2 cut(s) 226, 740
FriOI GRGCYC 1 cut(s) 583
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 1 cut(s) 822
GluI GCNGC 1 cut(s) 186
HaeIII GGCC 1 cut(s) 765
HapII CCGG 2 cut(s) 137, 194
HgaI GACGC 3 cut(s) 20, 490, 834
Hin1I GRCGYC 1 cut(s) 482
Hin1II CATG 2 cut(s) 163, 608
HinfI GANTC 6 cut(s) 265, 386, 707, 938, 992, 1014
HpaII CCGG 2 cut(s) 137, 194
HphI GGTGA 3 cut(s) 412, 539, 692
Hpy166II GTNNAC 5 cut(s) 61, 355, 530, 811, 983
Hpy188III TCNNGA 2 cut(s) 44, 697
Hpy8I GTNNAC 5 cut(s) 61, 355, 530, 811, 983
Hpy99I CGWCG 1 cut(s) 36
HpyAV CCTTC 2 cut(s) 678, 953
HpyCH4III ACNGT 3 cut(s) 126, 151, 746
HpyCH4IV ACGT 2 cut(s) 71, 714
HpyCH4V TGCA 2 cut(s) 154, 965
HpyF10VI GCNNNNNNNGC 3 cut(s) 548, 890, 899
HpyF3I CTNAG 2 cut(s) 317, 582
HpySE526I ACGT 2 cut(s) 71, 714
Hsp92I GRCGYC 1 cut(s) 482
Hsp92II CATG 2 cut(s) 163, 608
Kzo9I GATC 7 cut(s) 3, 40, 166, 424, 871, 954, 997
LmnI GCTCC 4 cut(s) 139, 193, 614, 817
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 2 cut(s) 151, 493
MabI ACCWGGT 1 cut(s) 532
MaeI CTAG 1 cut(s) 822
MaeII ACGT 2 cut(s) 71, 714
MaeIII GTNAC 4 cut(s) 230, 400, 544, 911
MalI GATC 7 cut(s) 5, 42, 168, 426, 873, 956, 999
MboI GATC 7 cut(s) 3, 40, 166, 424, 871, 954, 997
MboII GAAGA 3 cut(s) 294, 446, 765
MflI RGATCY 3 cut(s) 166, 871, 954
MhlI GDGCHC 1 cut(s) 583
MluCI AATT 2 cut(s) 220, 1008
MmeI TCCRAC 1 cut(s) 592
MnlI CCTC 5 cut(s) 194, 465, 601, 666, 945
MroXI GAANNNNTTC 1 cut(s) 298
MseI TTAA 1 cut(s) 792
MspI CCGG 2 cut(s) 137, 194
MspR9I CCNGG 3 cut(s) 228, 486, 534
MvaI CCWGG 3 cut(s) 228, 486, 534
MwoI GCNNNNNNNGC 3 cut(s) 548, 890, 899
NcoI CCATGG 1 cut(s) 159
NdeI CATATG 1 cut(s) 346
NdeII GATC 7 cut(s) 3, 40, 166, 424, 871, 954, 997
NlaIII CATG 2 cut(s) 163, 608
NlaIV GGNNCC 4 cut(s) 168, 819, 873, 956
NmuCI GTSAC 1 cut(s) 400
NspV TTCGAA 1 cut(s) 263
PcsI WCGNNNNNNNCGW 1 cut(s) 260
PdmI GAANNNNTTC 1 cut(s) 298
PfeI GAWTC 6 cut(s) 265, 386, 707, 938, 992, 1014
PflMI CCANNNNNTGG 1 cut(s) 785
PkrI GCNGC 1 cut(s) 187
Ppu21I YACGTR 1 cut(s) 72
Psp124BI GAGCTC 1 cut(s) 583
Psp1406I AACGTT 1 cut(s) 714
Psp6I CCWGG 3 cut(s) 226, 484, 532
PspGI CCWGG 3 cut(s) 226, 484, 532
PspN4I GGNNCC 4 cut(s) 168, 819, 873, 956
PspPI GGNCC 1 cut(s) 46
PsrI GAACNNNNNNTAC 2 cut(s) 364, 396
PsuI RGATCY 3 cut(s) 166, 871, 954
RsaI GTAC 4 cut(s) 62, 70, 74, 748
RsaNI GTAC 4 cut(s) 61, 69, 73, 747
SacI GAGCTC 1 cut(s) 583
SaqAI TTAA 1 cut(s) 792
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 7 cut(s) 3, 40, 166, 424, 871, 954, 997
Sau96I GGNCC 1 cut(s) 46
ScrFI CCNGG 3 cut(s) 228, 486, 534
SduI GDGCHC 1 cut(s) 583
SexAI ACCWGGT 1 cut(s) 532
SfaNI GCATC 2 cut(s) 151, 493
SfuI TTCGAA 1 cut(s) 263
SinI GGWCC 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 628
SmoI CTYRAG 1 cut(s) 628
SnaBI TACGTA 1 cut(s) 72
Sse9I AATT 2 cut(s) 220, 1008
SsiI CCGC 3 cut(s) 164, 191, 551
SspMI CTAG 1 cut(s) 822
SstI GAGCTC 1 cut(s) 583
StyD4I CCNGG 3 cut(s) 226, 484, 532
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 3 cut(s) 126, 151, 746
TaiI ACGT 2 cut(s) 74, 717
TaqI TCGA 4 cut(s) 39, 263, 445, 671
TasI AATT 2 cut(s) 220, 1008
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 6 cut(s) 265, 386, 707, 938, 992, 1014
Tru1I TTAA 1 cut(s) 792
Tru9I TTAA 1 cut(s) 792
TscAI CASTG 2 cut(s) 745, 835
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 1 cut(s) 772
TspGWI ACGGA 1 cut(s) 968
TspRI CASTG 2 cut(s) 745, 835
Van91I CCANNNNNTGG 1 cut(s) 785
VpaK11BI GGWCC 1 cut(s) 46
XmiI GTMKAC 2 cut(s) 354, 982
XmnI GAANNNNTTC 1 cut(s) 298
XspI CTAG 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.