Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002860

Physical Location & Seq

Genomic Coordinates Reverse (-)

70825713 .. 70830567

Gene Structure 4855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG512800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCGGATCCCTACCAGAGATACGCTGCTCCGCCGGAACGAGGTAGTGTAGCAAAGTCCAATTTTCCTGGTTACTTATCATCCGAAGCACCATCGTTGCTTTCGAATCACACTTTTGCCCCTACTGAATTGAGAAGCTATTCTTCGGATTTTCTGCTGAGAGATAAATCGTTGGGGTCTGTGCCGTATGGTGTAGATGATAGTAGAGTTCGTTCTGATTCGGGTGTTGGGGTGACAGCAGGGTCTAGCCTATATGATCCTTTGGAAGATACTTATCGAAGCCAGAGACGGGATATTGCGATGAGGTCAATGACGCCTGGGGTTTATGGTGTAGATGCTGTGAGTGTTAGTGTTCGTGCTGAACCTCGTCTTACTGTAACAGCAGGGGCTGGTTTTCCATCTCCTTTACAAGCTCAGACTTTATTAAACCAAAGACATGAGGTTGGAGCTGGCATTGGCTCAAGTGTTTCTACTGACTTCAGTAGAGAAAGGTCTGTGCCTTCGAGGAGTGGTGATGGTCTCCCAGTCCTGAAAGGGGAATCAAACATTTTGTTTGTGGATGGACTTCCCACTGACTGTACCAGAAGAGAAGTAGGCCATCTATTTCGTCCATTCATTGGCTTTAAAGAAATCAAAGTAGTTCACAAGGAGCCTCGACGCGTAAGTGCACTCATTTGCCTAGTTCTATCAAGTAATTTTGATAGACATCATAAAGGTTTAACACTGAGAGTCCACTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

246

Amino Acids

26.79

Weight (kDa)

9.14

Isoelectric Point (pI)

57.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31470 FvH4_2g31470
malus_domestica	MD08G1066100.v1.1 MD15G1055100.v1.1
prunus_persica	Prupe.1G408300_v2.0.a1
pyrus_communis	pycom08g05480 pycom15g05200
rosa_chinensis	RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331
rosa_laevigata	RLG00000010416
rosa_multiflora	Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750
rosa_rugosa	Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1
rosa_samantha	Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800
rosa_wichuraiana	Rw3G022150 Rw5G025820 Rw6G043740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	241
AccB7I	CCANNNNNTGG	1 cut(s)	617
AccII	CGCG	1 cut(s)	660
AciI	CCGC	2 cut(s)	5, 32
AclWI	GGATC	3 cut(s)	2, 15, 251
AcuI	CTGAAG	1 cut(s)	463
AcyI	GRCGYC	1 cut(s)	314
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	4 cut(s)	41, 289, 535, 617
AflIII	ACRYGT	1 cut(s)	658
AjnI	CCWGG	2 cut(s)	67, 316
AluBI	AGCT	3 cut(s)	138, 413, 449
AluI	AGCT	3 cut(s)	138, 413, 449
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	2 cut(s)	280, 524
Alw44I	GTGCAC	1 cut(s)	666
AlwI	GGATC	3 cut(s)	2, 15, 251
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	595
ApaLI	GTGCAC	1 cut(s)	666
ApeKI	GCWGC	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	244, 524
AsuII	TTCGAA	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	670
BamHI	GGATCC	1 cut(s)	7
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	5 cut(s)	100, 406, 509, 554, 606
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	2 cut(s)	69, 318
BcoDI	GTCTC	2 cut(s)	280, 524
BfaI	CTAG	2 cut(s)	246, 680
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	2 cut(s)	69, 318
BmiI	GGNNCC	2 cut(s)	9, 651
BmrFI	CCNGG	2 cut(s)	69, 318
BmrI	ACTGGG	1 cut(s)	518
BmsI	GCATC	1 cut(s)	325
BmuI	ACTGGG	1 cut(s)	518
Bpu14I	TTCGAA	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	445
BsaBI	GATNNNNATC	2 cut(s)	273, 705
BsaHI	GRCGYC	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	524
BsaJI	CCNNGG	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 289, 535, 617
Bse1I	ACTGG	1 cut(s)	524
Bse8I	GATNNNNATC	2 cut(s)	273, 705
BseBI	CCWGG	2 cut(s)	69, 318
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	80, 565
BseJI	GATNNNNATC	2 cut(s)	273, 705
BseLI	CCNNNNNNNGG	4 cut(s)	41, 289, 535, 617
BseMII	CTCAG	3 cut(s)	149, 428, 716
BseNI	ACTGG	1 cut(s)	524
BseRI	GAGGAG	1 cut(s)	520
BseSI	GKGCMC	1 cut(s)	670
BseXI	GCAGC	1 cut(s)	13
Bsh1236I	CGCG	1 cut(s)	660
BshFI	GGCC	1 cut(s)	597
BsiHKAI	GWGCWC	1 cut(s)	670
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	4 cut(s)	41, 289, 535, 617
BsmAI	GTCTC	2 cut(s)	280, 524
BsmBI	CGTCTC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	597
Bso31I	GGTCTC	1 cut(s)	524
Bsp119I	TTCGAA	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	2 cut(s)	7, 256
BspACI	CCGC	2 cut(s)	5, 32
BspANI	GGCC	1 cut(s)	597
BspCNI	CTCAG	3 cut(s)	150, 427, 717
BspFNI	CGCG	1 cut(s)	660
BspLI	GGNNCC	2 cut(s)	9, 651
BspPI	GGATC	3 cut(s)	2, 15, 251
BspT104I	TTCGAA	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	524
BsrI	ACTGG	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	2 cut(s)	7, 256
BssNI	GRCGYC	1 cut(s)	314
Bst2UI	CCWGG	2 cut(s)	69, 318
Bst4CI	ACNGT	2 cut(s)	376, 578
Bst6I	CTCTTC	1 cut(s)	580
BstACI	GRCGYC	1 cut(s)	314
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	3 cut(s)	158, 414, 725
BstF5I	GGATG	2 cut(s)	80, 565
BstFNI	CGCG	1 cut(s)	660
BstKTI	GATC	2 cut(s)	10, 259
BstMAI	GTCTC	2 cut(s)	280, 524
BstMBI	GATC	2 cut(s)	7, 256
BstNI	CCWGG	2 cut(s)	69, 318
BstSCI	CCNGG	2 cut(s)	67, 316
BstSLI	GKGCMC	1 cut(s)	670
BstUI	CGCG	1 cut(s)	660
BstV1I	GCAGC	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	597
BtgZI	GCGATG	1 cut(s)	314
BtsCI	GGATG	2 cut(s)	80, 565
BtsIMutI	CAGTG	2 cut(s)	570, 722
Cac8I	GCNNGC	1 cut(s)	451
CaiI	CAGNNNCTG	1 cut(s)	389
CseI	GACGC	2 cut(s)	322, 666
Csp6I	GTAC	1 cut(s)	579
CviAII	CATG	1 cut(s)	437
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	3 cut(s)	158, 414, 725
DpnI	GATC	2 cut(s)	9, 258
DpnII	GATC	2 cut(s)	7, 256
DraI	TTTAAA	1 cut(s)	625
DrdI	GACNNNNNNGTC	1 cut(s)	241
DseDI	GACNNNNNNGTC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	580
EarI	CTCTTC	1 cut(s)	580
EciI	GGCGGA	2 cut(s)	20, 21
Eco31I	GGTCTC	1 cut(s)	524
Eco57I	CTGAAG	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	67, 316
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	1 cut(s)	440
FaiI	YATR	7 cut(s)	189, 253, 255, 327, 438, 711, 739
FalI	AAGNNNNNCTT	2 cut(s)	127, 159
FatI	CATG	1 cut(s)	436
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	2 cut(s)	67, 572
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	2 cut(s)	246, 680
GluI	GCNGC	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	597
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	2 cut(s)	322, 666
Hin1I	GRCGYC	1 cut(s)	314
Hin1II	CATG	1 cut(s)	440
HinfI	GANTC	4 cut(s)	106, 218, 539, 729
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	2 cut(s)	244, 524
Hpy166II	GTNNAC	3 cut(s)	643, 668, 733
Hpy188I	TCNGA	4 cut(s)	85, 148, 217, 417
Hpy188III	TCNNGA	1 cut(s)	529
Hpy8I	GTNNAC	3 cut(s)	643, 668, 733
Hpy99I	CGWCG	1 cut(s)	660
HpyAV	CCTTC	1 cut(s)	510
HpyCH4III	ACNGT	2 cut(s)	376, 578
HpyCH4V	TGCA	1 cut(s)	668
HpyF3I	CTNAG	3 cut(s)	158, 414, 725
Hsp92I	GRCGYC	1 cut(s)	314
Hsp92II	CATG	1 cut(s)	440
Kzo9I	GATC	2 cut(s)	7, 256
LmnI	GCTCC	3 cut(s)	34, 446, 649
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	2 cut(s)	246, 680
MaeIII	GTNAC	3 cut(s)	71, 232, 376
MalI	GATC	2 cut(s)	9, 258
MboI	GATC	2 cut(s)	7, 256
MboII	GAAGA	3 cut(s)	135, 278, 597
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	3 cut(s)	61, 128, 694
MluI	ACGCGT	1 cut(s)	658
MlyI	GAGTC	1 cut(s)	738
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	6 cut(s)	35, 297, 375, 433, 498, 663
MroXI	GAANNNNTTC	1 cut(s)	139
MseI	TTAA	3 cut(s)	425, 624, 719
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	2 cut(s)	69, 318
MvaI	CCWGG	2 cut(s)	69, 318
MvnI	CGCG	1 cut(s)	660
NdeII	GATC	2 cut(s)	7, 256
NlaIII	CATG	1 cut(s)	440
NlaIV	GGNNCC	2 cut(s)	9, 651
NmuCI	GTSAC	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	139
PfeI	GAWTC	3 cut(s)	106, 218, 539
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	737
PpsI	GAGTC	1 cut(s)	737
Psp6I	CCWGG	2 cut(s)	67, 316
PspGI	CCWGG	2 cut(s)	67, 316
PspN4I	GGNNCC	2 cut(s)	9, 651
PsrI	GAACNNNNNNTAC	2 cut(s)	196, 228
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
SaqAI	TTAA	3 cut(s)	425, 624, 719
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	2 cut(s)	7, 256
SchI	GAGTC	1 cut(s)	738
ScrFI	CCNGG	2 cut(s)	69, 318
SduI	GDGCHC	1 cut(s)	670
SetI	ASST	9 cut(s)	46, 140, 308, 367, 415, 444, 451, 494, 718
SfaNI	GCATC	1 cut(s)	325
SfuI	TTCGAA	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
Sse9I	AATT	3 cut(s)	61, 128, 694
SsiI	CCGC	2 cut(s)	5, 32
SspMI	CTAG	2 cut(s)	246, 680
StyD4I	CCNGG	2 cut(s)	67, 316
TaaI	ACNGT	2 cut(s)	376, 578
TaqI	TCGA	4 cut(s)	104, 277, 503, 655
TasI	AATT	3 cut(s)	61, 128, 694
TfiI	GAWTC	3 cut(s)	106, 218, 539
Tru1I	TTAA	3 cut(s)	425, 624, 719
Tru9I	TTAA	3 cut(s)	425, 624, 719
TscAI	CASTG	2 cut(s)	577, 729
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	604
TspRI	CASTG	2 cut(s)	577, 729
Van91I	CCANNNNNTGG	1 cut(s)	617
VneI	GTGCAC	1 cut(s)	666
XmnI	GAANNNNTTC	1 cut(s)	139
XspI	CTAG	2 cut(s)	246, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.