Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036231.1

Orthogroup ID

OG0002860

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 606

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036231.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atggtggatccctaccatagatacgctgctccgccggaacgaggtagtgtagcaaattccaattttcctggttacttatcatccgaagcaccatcgttactatcgaatcacacttttgcccctactgatttgagaagctattcttcggatttttggctgagagataaatcgttggggtctgtgccgtatggtgtagatgatagtgtgggtagtagagttcgttctgattcgggtgttggggtgacagcagggtctggcctatatgatcctttggaagatacttatcgaagccagagaaaggatattgcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

103

Amino Acids

11.19

Weight (kDa)

5.15

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31470 FvH4_2g31470
malus_domestica	MD08G1066100.v1.1 MD15G1055100.v1.1
prunus_persica	Prupe.1G408300_v2.0.a1
pyrus_communis	pycom08g05480 pycom15g05200
rosa_chinensis	RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331
rosa_laevigata	RLG00000010416
rosa_multiflora	Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750
rosa_rugosa	Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1
rosa_samantha	Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800
rosa_wichuraiana	Rw3G022150 Rw5G025820 Rw6G043740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	250
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	3 cut(s)	2, 15, 260
AcsI	RAATTY	1 cut(s)	55
AfiI	CCNNNNNNNGG	2 cut(s)	41, 298
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	1 cut(s)	138
AluI	AGCT	1 cut(s)	138
AlwI	GGATC	3 cut(s)	2, 15, 260
AlwNI	CAGNNNCTG	1 cut(s)	254
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	253
BamHI	GGATCC	1 cut(s)	7
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	1 cut(s)	100
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 298
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	80
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	2 cut(s)	41, 298
BseMII	CTCAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	13
BshFI	GGCC	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	41, 298
BsnI	GGCC	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	7, 265
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	3 cut(s)	2, 15, 260
BssMI	GATC	2 cut(s)	7, 265
Bst2UI	CCWGG	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	80
BstKTI	GATC	2 cut(s)	10, 268
BstMBI	GATC	2 cut(s)	7, 265
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	80
CaiI	CAGNNNCTG	1 cut(s)	254
CviJI	RGCY	4 cut(s)	138, 157, 258, 291
CviKI_1	RGCY	4 cut(s)	138, 157, 258, 291
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	2 cut(s)	9, 267
DpnII	GATC	2 cut(s)	7, 265
DrdI	GACNNNNNNGTC	1 cut(s)	250
DseDI	GACNNNNNNGTC	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	67
FaiI	YATR	4 cut(s)	18, 189, 262, 264
FalI	AAGNNNNNCTT	2 cut(s)	127, 159
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	1 cut(s)	35
HinfI	GANTC	2 cut(s)	106, 227
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	85, 148, 226
HpyF3I	CTNAG	1 cut(s)	158
Kzo9I	GATC	2 cut(s)	7, 265
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	6 cut(s)	48, 54, 81, 234, 240, 305
Lsp1109I	GCAGC	1 cut(s)	13
MaeIII	GTNAC	3 cut(s)	71, 96, 241
MalI	GATC	2 cut(s)	9, 267
MboI	GATC	2 cut(s)	7, 265
MboII	GAAGA	2 cut(s)	135, 287
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	2 cut(s)	55, 61
MnlI	CCTC	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	139
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
NdeII	GATC	2 cut(s)	7, 265
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	106, 227
PkrI	GCNGC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	9
PsrI	GAACNNNNNNTAC	2 cut(s)	205, 237
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	7
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	2 cut(s)	7, 265
ScrFI	CCNGG	1 cut(s)	69
SetI	ASST	2 cut(s)	46, 140
SgeI	CNNG	8 cut(s)	47, 53, 80, 81, 243, 261, 267, 304
Sse9I	AATT	2 cut(s)	55, 61
SsiI	CCGC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	67
TaqI	TCGA	2 cut(s)	104, 286
TasI	AATT	2 cut(s)	55, 61
TfiI	GAWTC	2 cut(s)	106, 227
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.