Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002860

Physical Location & Seq

Genomic Coordinates Forward (+)

18423188 .. 18423965

Gene Structure 778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00014830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGACTCCCATCACCCAACACCGTACATTTCAATCCTCGCTTGATCTGTACACAAAACTGATCCGAATCTACGCCCGTGATCGAGAATTGCACTCAGCAAGACTACTCCACGCCCATTTGATCATCACCGGGTTAGCCCGTTTGACCCATTTCGCCTCCAAGCTCATACTTAGCCCTTGCCCGCAACCTAAATCGTTGGGGTCTGTGCCGTATGGTGTAGATGATAGTGTGGGTAGTAGAGTTCGTTCTGATTCGGGTGTTGGGGTGACTGCAGGGTCTAGCCTATATGATCCTTTGGAAGATACTTATCGAAGCCAGAGACAGGATATTGCGATGAGGTCAATGACGCCTGGGGTTTATGGTGTAGATGCTGTGAGTGTTAGTGTTCGTGGTGAACCTGGTCTTGCTGTAACGGCGGGGGCTGGTTATCCATCTCCTTTACGAGCTCAGACTTTACTAAGCCAAAGACATGCGGCTGGAGTGGGCATGTGGATAGAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

167

Amino Acids

17.99

Weight (kDa)

9.46

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31470 FvH4_2g31470
malus_domestica	MD08G1066100.v1.1 MD15G1055100.v1.1
prunus_persica	Prupe.1G408300_v2.0.a1
pyrus_communis	pycom08g05480 pycom15g05200
rosa_chinensis	RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331
rosa_laevigata	RLG00000010416
rosa_multiflora	Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750
rosa_rugosa	Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1
rosa_samantha	Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800
rosa_wichuraiana	Rw3G022150 Rw5G025820 Rw6G043740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	274
AciI	CCGC	3 cut(s)	182, 416, 473
AclWI	GGATC	2 cut(s)	55, 284
AcyI	GRCGYC	1 cut(s)	347
AfaI	GTAC	2 cut(s)	25, 50
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	32
AjnI	CCWGG	2 cut(s)	349, 397
AluBI	AGCT	2 cut(s)	163, 446
AluI	AGCT	2 cut(s)	163, 446
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	2 cut(s)	55, 284
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	4 cut(s)	4, 118, 277, 404
BanII	GRGCYC	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	448
BccI	CCATC	2 cut(s)	17, 439
BceAI	ACGGC	2 cut(s)	193, 429
BciT130I	CCWGG	2 cut(s)	351, 399
BclI	TGATCA	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	2 cut(s)	279, 502
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
Bme1390I	CCNGG	3 cut(s)	130, 351, 399
BmrFI	CCNGG	3 cut(s)	130, 351, 399
BmsI	GCATC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	130
BsaBI	GATNNNNATC	2 cut(s)	65, 306
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse8I	GATNNNNATC	2 cut(s)	65, 306
BseBI	CCWGG	2 cut(s)	351, 399
BseDI	CCNNGG	1 cut(s)	350
BseJI	GATNNNNATC	2 cut(s)	65, 306
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	2 cut(s)	108, 461
BsiHKAI	GWGCWC	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	5 cut(s)	43, 60, 79, 120, 289
BspACI	CCGC	3 cut(s)	182, 416, 473
BspCNI	CTCAG	2 cut(s)	107, 460
BspMAI	CTGCAG	1 cut(s)	274
BspPI	GGATC	2 cut(s)	55, 284
BsrGI	TGTACA	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	5 cut(s)	43, 60, 79, 120, 289
BssNI	GRCGYC	1 cut(s)	347
Bst2UI	CCWGG	2 cut(s)	351, 399
Bst4CI	ACNGT	1 cut(s)	23
BstACI	GRCGYC	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	4 cut(s)	94, 170, 447, 458
BstKTI	GATC	5 cut(s)	46, 63, 82, 123, 292
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	5 cut(s)	43, 60, 79, 120, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNI	CCWGG	2 cut(s)	351, 399
BstNSI	RCATGY	2 cut(s)	473, 490
BstSCI	CCNGG	3 cut(s)	128, 349, 397
BstSFI	CTRYAG	1 cut(s)	270
BtgZI	GCGATG	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	182
CseI	GACGC	1 cut(s)	355
CsiI	ACCWGGT	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	24, 49
CviAII	CATG	2 cut(s)	470, 487
CviQI	GTAC	2 cut(s)	24, 49
DdeI	CTNAG	4 cut(s)	94, 170, 447, 458
DpnI	GATC	5 cut(s)	45, 62, 81, 122, 291
DpnII	GATC	5 cut(s)	43, 60, 79, 120, 289
DrdI	GACNNNNNNGTC	1 cut(s)	274
DseDI	GACNNNNNNGTC	1 cut(s)	274
Ecl136II	GAGCTC	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	446
EcoICRI	GAGCTC	1 cut(s)	446
EcoRII	CCWGG	2 cut(s)	349, 397
EcoT38I	GRGCYC	1 cut(s)	448
FaeI	CATG	2 cut(s)	473, 490
FaiI	YATR	7 cut(s)	167, 213, 286, 288, 360, 471, 488
FatI	CATG	2 cut(s)	469, 486
FauI	CCCGC	2 cut(s)	189, 409
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	474
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	2 cut(s)	279, 502
GluI	GCNGC	1 cut(s)	474
GsuI	CTGGAG	1 cut(s)	498
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	1 cut(s)	355
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	2 cut(s)	473, 490
HinfI	GANTC	3 cut(s)	4, 66, 251
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	4 cut(s)	4, 118, 277, 404
Hpy166II	GTNNAC	2 cut(s)	51, 395
Hpy188I	TCNGA	3 cut(s)	65, 250, 450
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	2 cut(s)	51, 395
HpyAV	CCTTC	1 cut(s)	491
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	91, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	4 cut(s)	94, 170, 447, 458
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	2 cut(s)	473, 490
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	5 cut(s)	43, 60, 79, 120, 289
LweI	GCATC	1 cut(s)	358
MabI	ACCWGGT	1 cut(s)	397
MaeI	CTAG	2 cut(s)	279, 502
MaeIII	GTNAC	2 cut(s)	265, 409
MalI	GATC	5 cut(s)	45, 62, 81, 122, 291
MboI	GATC	5 cut(s)	43, 60, 79, 120, 289
MboII	GAAGA	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	1 cut(s)	86
MnlI	CCTC	3 cut(s)	46, 166, 330
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	3 cut(s)	130, 351, 399
MvaI	CCWGG	2 cut(s)	351, 399
MwoI	GCNNNNNNNGC	1 cut(s)	413
NciI	CCSGG	1 cut(s)	130
NdeII	GATC	5 cut(s)	43, 60, 79, 120, 289
NlaIII	CATG	2 cut(s)	473, 490
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	2 cut(s)	473, 490
PfeI	GAWTC	2 cut(s)	66, 251
PkrI	GCNGC	1 cut(s)	475
Psp124BI	GAGCTC	1 cut(s)	448
Psp6I	CCWGG	2 cut(s)	349, 397
PspGI	CCWGG	2 cut(s)	349, 397
PsrI	GAACNNNNNNTAC	2 cut(s)	229, 261
PstI	CTGCAG	1 cut(s)	274
RsaI	GTAC	2 cut(s)	25, 50
RsaNI	GTAC	2 cut(s)	24, 49
SacI	GAGCTC	1 cut(s)	448
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	5 cut(s)	43, 60, 79, 120, 289
ScrFI	CCNGG	3 cut(s)	130, 351, 399
SduI	GDGCHC	1 cut(s)	448
SetI	ASST	5 cut(s)	165, 190, 341, 400, 448
SexAI	ACCWGGT	1 cut(s)	397
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	1 cut(s)	270
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	3 cut(s)	182, 416, 473
SspMI	CTAG	2 cut(s)	279, 502
SstI	GAGCTC	1 cut(s)	448
StyD4I	CCNGG	3 cut(s)	128, 349, 397
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	2 cut(s)	82, 310
TasI	AATT	1 cut(s)	86
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	2 cut(s)	66, 251
TseFI	GTSAC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	265
XceI	RCATGY	2 cut(s)	473, 490
XspI	CTAG	2 cut(s)	279, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.