RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g31470 FvH4_2g31470 |
| malus_domestica | MD08G1066100.v1.1 MD15G1055100.v1.1 |
| prunus_persica | Prupe.1G408300_v2.0.a1 |
| pyrus_communis | pycom08g05480 pycom15g05200 |
| rosa_chinensis | RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331 |
| rosa_laevigata | RLG00000010416 |
| rosa_multiflora | Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017 |
| rosa_roxburghii | Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750 |
| rosa_rugosa | Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1 |
| rosa_samantha | Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800 |
| rosa_wichuraiana | Rw3G022150 Rw5G025820 Rw6G043740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 160 |
| AciI | CCGC | 1 cut(s) | 214 |
| AclWI | GGATC | 1 cut(s) | 170 |
| AcuI | CTGAAG | 1 cut(s) | 213 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 55, 204 |
| AgsI | TTSAA | 1 cut(s) | 40 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 34 |
| Alw26I | GTCTC | 1 cut(s) | 195 |
| AlwI | GGATC | 1 cut(s) | 170 |
| AsuHPI | GGTGA | 1 cut(s) | 163 |
| BceAI | ACGGC | 1 cut(s) | 79 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 60, 94 |
| BcoDI | GTCTC | 1 cut(s) | 195 |
| BfaI | CTAG | 1 cut(s) | 165 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 55, 204 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 55, 204 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 55, 204 |
| BsmAI | GTCTC | 1 cut(s) | 195 |
| Bsp143I | GATC | 1 cut(s) | 175 |
| BspACI | CCGC | 1 cut(s) | 214 |
| BspPI | GGATC | 1 cut(s) | 170 |
| BssMI | GATC | 1 cut(s) | 175 |
| BstKTI | GATC | 1 cut(s) | 178 |
| BstMAI | GTCTC | 1 cut(s) | 195 |
| BstMBI | GATC | 1 cut(s) | 175 |
| CviJI | RGCY | 3 cut(s) | 48, 168, 197 |
| CviKI_1 | RGCY | 3 cut(s) | 48, 168, 197 |
| DpnI | GATC | 1 cut(s) | 177 |
| DpnII | GATC | 1 cut(s) | 175 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 160 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 160 |
| Eco57I | CTGAAG | 1 cut(s) | 213 |
| FaiI | YATR | 5 cut(s) | 54, 69, 99, 172, 174 |
| FspBI | CTAG | 1 cut(s) | 165 |
| HinfI | GANTC | 1 cut(s) | 137 |
| HphI | GGTGA | 1 cut(s) | 163 |
| Hpy188I | TCNGA | 1 cut(s) | 136 |
| HpyCH4V | TGCA | 1 cut(s) | 71 |
| Kzo9I | GATC | 1 cut(s) | 175 |
| LpnPI | CCDG | 3 cut(s) | 144, 190, 211 |
| MaeI | CTAG | 1 cut(s) | 165 |
| MaeIII | GTNAC | 1 cut(s) | 151 |
| MalI | GATC | 1 cut(s) | 177 |
| MboI | GATC | 1 cut(s) | 175 |
| MboII | GAAGA | 2 cut(s) | 22, 197 |
| MluCI | AATT | 1 cut(s) | 63 |
| MnlI | CCTC | 1 cut(s) | 49 |
| MseI | TTAA | 1 cut(s) | 6 |
| NdeII | GATC | 1 cut(s) | 175 |
| NmuCI | GTSAC | 1 cut(s) | 151 |
| PfeI | GAWTC | 1 cut(s) | 137 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 115, 147 |
| SaqAI | TTAA | 1 cut(s) | 6 |
| Sau3AI | GATC | 1 cut(s) | 175 |
| SgeI | CNNG | 5 cut(s) | 57, 153, 171, 177, 210 |
| Sse9I | AATT | 1 cut(s) | 63 |
| SsiI | CCGC | 1 cut(s) | 214 |
| SspMI | CTAG | 1 cut(s) | 165 |
| TasI | AATT | 1 cut(s) | 63 |
| TfiI | GAWTC | 1 cut(s) | 137 |
| Tru1I | TTAA | 1 cut(s) | 6 |
| Tru9I | TTAA | 1 cut(s) | 6 |
| TseFI | GTSAC | 1 cut(s) | 151 |
| Tsp45I | GTSAC | 1 cut(s) | 151 |
| XspI | CTAG | 1 cut(s) | 165 |