Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002860

Physical Location & Seq

Genomic Coordinates Forward (+)

3109543 .. 3110804

Gene Structure 1262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCGCGATCCGTACCGTATATACTTCACCCCGCCCCAATTAGACAGTGTTGCAAGGCCAAGCTTTCCTGGCTACTTGTCGTCGGAAACACCCTCATTGCCATTCAACCCAACGATTCCTTCTACCGATACGCAGCGGAGTTATGCTTCCGATTTTCTGCACAGAGATATAAGATCAATGACCACTGGAGCATATGCTGTAGATGATGCTATGGGTCTTCGGTCTTGTCCTGAACCGGTTCTTGGTGCAACAGAAAGAGCTAGCACAAAGGGTTATTCGTTGCTTTTAGAAGTTCCGAGTTTGATAAGCAAGAGACTGGAAGTTGCTGCAGTAAGCATGAGTCCAAATCTTCCTGCAGACATAAGTTTAGAAAAGCCAGCTGGCTCTTCGAGAAATGCTGATGTTCTTCCTGTGAAAGGGGAATCAAATGTTTTGTTTGTCGATGGACTTCCCACTGACTCTACCCGAAGAGAAGTAGGCCATATCCTTTTACTCCTAACCCTAGATTCAGAGTTTATTGAAATGGAAATGATCGTTGCTGAAATATGCTTATTATACTGCTTTGTTCTGTCATTTAAAAACCTTGACTTGCAACGAAGATATATTCCGTCCATTTATTGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

209

Amino Acids

23.13

Weight (kDa)

4.97

Isoelectric Point (pI)

60.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31470 FvH4_2g31470
malus_domestica	MD08G1066100.v1.1 MD15G1055100.v1.1
prunus_persica	Prupe.1G408300_v2.0.a1
pyrus_communis	pycom08g05480 pycom15g05200
rosa_chinensis	RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331
rosa_laevigata	RLG00000010416
rosa_multiflora	Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750
rosa_rugosa	Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1
rosa_samantha	Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800
rosa_wichuraiana	Rw3G022150 Rw5G025820 Rw6G043740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	618
AccII	CGCG	1 cut(s)	6
AciI	CCGC	2 cut(s)	32, 136
AclWI	GGATC	1 cut(s)	2
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	3 cut(s)	242, 416, 618
AgeI	ACCGGT	1 cut(s)	235
AgsI	TTSAA	2 cut(s)	106, 521
AjnI	CCWGG	1 cut(s)	67
AjuI	GAANNNNNNNTTGG	4 cut(s)	103, 135, 225, 257
AluBI	AGCT	3 cut(s)	63, 260, 380
AluI	AGCT	3 cut(s)	63, 260, 380
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	2
AoxI	GGCC	2 cut(s)	56, 478
ApeKI	GCWGC	2 cut(s)	133, 326
AsiGI	ACCGGT	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	19
AsuNHI	GCTAGC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	145, 313
BccI	CCATC	1 cut(s)	437
BciT130I	CCWGG	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	2 cut(s)	261, 503
BfmI	CTRYAG	3 cut(s)	198, 327, 354
BisI	GCNGC	2 cut(s)	134, 327
BlsI	GCNGC	2 cut(s)	135, 328
Bme1390I	CCNGG	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	196
BmtI	GCTAGC	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 416, 618
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	2 cut(s)	190, 321
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	3 cut(s)	242, 416, 618
BseMI	GCAATG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	190, 321
BseXI	GCAGC	2 cut(s)	145, 313
BsgI	GTGCAG	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	2 cut(s)	58, 480
BshTI	ACCGGT	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	236
BslI	CCNNNNNNNGG	3 cut(s)	242, 416, 618
BsmAI	GTCTC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	58, 480
Bsp143I	GATC	3 cut(s)	7, 173, 531
BspACI	CCGC	2 cut(s)	32, 136
BspANI	GGCC	2 cut(s)	58, 480
BspFNI	CGCG	1 cut(s)	6
BspMAI	CTGCAG	2 cut(s)	331, 358
BspOI	GCTAGC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	2
BspQI	GCTCTTC	1 cut(s)	391
BsrDI	GCAATG	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	2 cut(s)	190, 321
BssAI	RCCGGY	1 cut(s)	235
BssMI	GATC	3 cut(s)	7, 173, 531
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	17, 47
Bst6I	CTCTTC	2 cut(s)	391, 463
BstC8I	GCNNGC	3 cut(s)	262, 378, 382
BstENI	CCTNNNNNAGG	1 cut(s)	414
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	10, 176, 534
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	3 cut(s)	7, 173, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	3 cut(s)	198, 327, 354
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	145, 313
BstV2I	GAAGAC	1 cut(s)	209
BsuRI	GGCC	2 cut(s)	58, 480
BtsIMutI	CAGTG	3 cut(s)	52, 183, 453
Cac8I	GCNNGC	3 cut(s)	262, 378, 382
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	13
CspAI	ACCGGT	1 cut(s)	235
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	9 cut(s)	58, 63, 72, 260, 376, 380, 384, 480, 622
CviKI_1	RGCY	9 cut(s)	58, 63, 72, 260, 376, 380, 384, 480, 622
CviQI	GTAC	1 cut(s)	13
DpnI	GATC	3 cut(s)	9, 175, 533
DpnII	GATC	3 cut(s)	7, 173, 531
DraI	TTTAAA	1 cut(s)	577
Eam1104I	CTCTTC	2 cut(s)	391, 463
EarI	CTCTTC	2 cut(s)	391, 463
EcoNI	CCTNNNNNAGG	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	67
FaeI	CATG	1 cut(s)	340
FatI	CATG	1 cut(s)	336
FauI	CCCGC	1 cut(s)	39
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	134, 327
Fsp4HI	GCNGC	2 cut(s)	134, 327
FspBI	CTAG	2 cut(s)	261, 503
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	134, 327
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	58, 480
HapII	CCGG	1 cut(s)	236
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	1 cut(s)	61
HinfI	GANTC	5 cut(s)	115, 340, 422, 458, 506
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	4 cut(s)	85, 151, 297, 511
Hpy188III	TCNNGA	2 cut(s)	230, 390
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	129
HpyCH4III	ACNGT	2 cut(s)	17, 47
HpyCH4V	TGCA	6 cut(s)	53, 160, 248, 329, 356, 592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	3 cut(s)	7, 173, 531
LguI	GCTCTTC	1 cut(s)	391
LmnI	GCTCC	1 cut(s)	188
Lsp1109I	GCAGC	2 cut(s)	145, 313
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	261, 503
MalI	GATC	3 cut(s)	9, 175, 533
MboI	GATC	3 cut(s)	7, 173, 531
MboII	GAAGA	6 cut(s)	209, 341, 378, 398, 480, 609
MluCI	AATT	1 cut(s)	38
MlyI	GAGTC	2 cut(s)	349, 452
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	2 cut(s)	576, 625
MspA1I	CMGCKG	2 cut(s)	136, 380
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	69
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	3 cut(s)	7, 173, 531
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	391
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	115, 422, 506
PflMI	CCANNNNNTGG	1 cut(s)	618
PinAI	ACCGGT	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	135, 328
PleI	GAGTC	2 cut(s)	348, 452
PpsI	GAGTC	2 cut(s)	348, 452
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PstI	CTGCAG	2 cut(s)	331, 358
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	391
SaqAI	TTAA	2 cut(s)	576, 625
SatI	GCNGC	2 cut(s)	134, 327
Sau3AI	GATC	3 cut(s)	7, 173, 531
SchI	GAGTC	2 cut(s)	349, 452
ScrFI	CCNGG	1 cut(s)	69
SetI	ASST	4 cut(s)	65, 262, 382, 585
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	3 cut(s)	198, 327, 354
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	2 cut(s)	32, 136
SspMI	CTAG	2 cut(s)	261, 503
StyD4I	CCNGG	1 cut(s)	67
TaaI	ACNGT	2 cut(s)	17, 47
TaqI	TCGA	2 cut(s)	389, 441
TaqII	GACCGA	1 cut(s)	210
TasI	AATT	1 cut(s)	38
TfiI	GAWTC	3 cut(s)	115, 422, 506
Tru1I	TTAA	2 cut(s)	576, 625
Tru9I	TTAA	2 cut(s)	576, 625
TscAI	CASTG	3 cut(s)	52, 190, 460
TseI	GCWGC	2 cut(s)	133, 326
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	3 cut(s)	52, 190, 460
Van91I	CCANNNNNTGG	1 cut(s)	618
XagI	CCTNNNNNAGG	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	2 cut(s)	261, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.