Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002860

Physical Location & Seq

Genomic Coordinates Reverse (-)

27495494 .. 27497228

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0277700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAAAGAGGGATTAGAAGCTTTGAGAGAGAATGATAATGGTGAATCACTGCAGTTCAAGAGCACAATAACGGAGTTAATTGGGAGTTATACGAAGACTACTACCACAATCAATGCTAAACCTGCTAAATCCAATGTGAAGAAAGTGAGAATCATAGTTAGCACTCTTGTTTACCCTACGGGGCAGCTGATACTGGGTGTAGCCCTGCTCGTTTATGTTTGGAAGAAGGATGCAGAAAAACTGAGCCGCAGCCACAAGGAAAATCTGGAATTACCATTGTTTGACTTGGCTACTGTTGTAAATGCAACCTGTAACTTCTCAAACGACAATAAACTAGGAGAAGGTGACTCCAGATCTGTCTTTAAGATAGATCAAAAAGCATGTTACTGGATTGGCCTAAGCGCTTTGACATTATTAATGGCATTGCTCGGGAGCTTCTCTATCTTCATCGAGATTCTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

154

Amino Acids

17.05

Weight (kDa)

7.71

Isoelectric Point (pI)

31.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31470 FvH4_2g31470
malus_domestica	MD08G1066100.v1.1 MD15G1055100.v1.1
prunus_persica	Prupe.1G408300_v2.0.a1
pyrus_communis	pycom08g05480 pycom15g05200
rosa_chinensis	RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331
rosa_laevigata	RLG00000010416
rosa_multiflora	Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750
rosa_rugosa	Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1
rosa_samantha	Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800
rosa_wichuraiana	Rw3G022150 Rw5G025820 Rw6G043740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	130
AciI	CCGC	1 cut(s)	247
AfeI	AGCGCT	1 cut(s)	403
AgsI	TTSAA	1 cut(s)	58
AluBI	AGCT	3 cut(s)	20, 187, 435
AluI	AGCT	3 cut(s)	20, 187, 435
Alw21I	GWGCWC	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	428
Aor51HI	AGCGCT	1 cut(s)	403
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	2 cut(s)	184, 249
AseI	ATTAAT	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	53, 356
AvaI	CYCGRG	1 cut(s)	428
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	196, 261
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	50
BfoI	RGCGCY	1 cut(s)	405
BfuAI	ACCTGC	1 cut(s)	130
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	3 cut(s)	185, 247, 250
BlsI	GCNGC	3 cut(s)	186, 248, 251
BmeT110I	CYCGRG	1 cut(s)	428
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	334
Bpu10I	CCTNAGC	1 cut(s)	398
Bse1I	ACTGG	2 cut(s)	198, 392
Bse3DI	GCAATG	1 cut(s)	422
BseGI	GGATG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	422
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	2 cut(s)	198, 392
BseXI	GCAGC	2 cut(s)	196, 261
BshFI	GGCC	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	428
BsnI	GGCC	1 cut(s)	396
BsoBI	CYCGRG	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	353, 370
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	1 cut(s)	234
BspMAI	CTGCAG	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	422
BsrI	ACTGG	2 cut(s)	198, 392
BssMI	GATC	2 cut(s)	353, 370
Bst4CI	ACNGT	1 cut(s)	295
BstDEI	CTNAG	2 cut(s)	242, 398
BstF5I	GGATG	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	2 cut(s)	356, 373
BstMBI	GATC	2 cut(s)	353, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	196, 261
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	47
BveI	ACCTGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	404
CviAII	CATG	1 cut(s)	381
CviJI	RGCY	8 cut(s)	20, 187, 203, 246, 252, 290, 396, 435
CviKI_1	RGCY	8 cut(s)	20, 187, 203, 246, 252, 290, 396, 435
DdeI	CTNAG	2 cut(s)	242, 398
DpnI	GATC	2 cut(s)	355, 372
DpnII	GATC	2 cut(s)	353, 370
Eco47III	AGCGCT	1 cut(s)	403
Eco88I	CYCGRG	1 cut(s)	428
FaeI	CATG	1 cut(s)	384
FaiI	YATR	4 cut(s)	90, 155, 216, 382
FatI	CATG	1 cut(s)	380
Fnu4HI	GCNGC	3 cut(s)	185, 247, 250
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	3 cut(s)	185, 247, 250
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	3 cut(s)	185, 247, 250
GsuI	CTGGAG	1 cut(s)	334
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	396
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	1 cut(s)	384
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	4 cut(s)	44, 150, 347, 454
HphI	GGTGA	2 cut(s)	53, 356
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188III	TCNNGA	6 cut(s)	58, 266, 351, 430, 451, 458
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	2 cut(s)	220, 335
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	3 cut(s)	52, 233, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	2 cut(s)	242, 398
Hsp92II	CATG	1 cut(s)	384
HspAI	GCGC	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	353, 370
LmnI	GCTCC	1 cut(s)	432
LpnPI	CCDG	7 cut(s)	135, 179, 218, 251, 322, 364, 373
Lsp1109I	GCAGC	2 cut(s)	196, 261
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	335
MaeIII	GTNAC	3 cut(s)	311, 344, 383
MalI	GATC	2 cut(s)	355, 372
MboI	GATC	2 cut(s)	353, 370
MboII	GAAGA	4 cut(s)	106, 151, 235, 436
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	2 cut(s)	78, 269
MlyI	GAGTC	1 cut(s)	341
MseI	TTAA	3 cut(s)	77, 363, 416
MspA1I	CMGCKG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	2 cut(s)	353, 370
NlaIII	CATG	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	384
PfeI	GAWTC	3 cut(s)	44, 150, 454
PkrI	GCNGC	3 cut(s)	186, 248, 251
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
PshBI	ATTAAT	1 cut(s)	416
PstI	CTGCAG	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	187
SaqAI	TTAA	3 cut(s)	77, 363, 416
SatI	GCNGC	3 cut(s)	185, 247, 250
Sau3AI	GATC	2 cut(s)	353, 370
SchI	GAGTC	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	6 cut(s)	22, 124, 189, 311, 346, 437
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	1 cut(s)	50
Sse9I	AATT	2 cut(s)	78, 269
SsiI	CCGC	1 cut(s)	247
SspMI	CTAG	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	450
TasI	AATT	2 cut(s)	78, 269
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	3 cut(s)	44, 150, 454
Tru1I	TTAA	3 cut(s)	77, 363, 416
Tru9I	TTAA	3 cut(s)	77, 363, 416
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	2 cut(s)	184, 249
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	17, 436
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	54
VspI	ATTAAT	1 cut(s)	416
XceI	RCATGY	1 cut(s)	384
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.