Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002860

Physical Location & Seq

Genomic Coordinates Reverse (-)

27034820 .. 27036599

Gene Structure 1780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G022150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCGGATCCCTACCATAGATACGCTGCTCCGCCGGAACGAGCAAAGTCCAATTTTCCTGGTTACTTATCATCCGAAGCACCATTGTTACTATCGAATCACACTTTTTCCCCTACTGATTTGAGAACCTATTCTTCGGATTTTCTGCTTAGAGATAGGTCAATGATGCCTGGGGTTTATGGTGTAGATGCTGTGAGTGTTAGTGTTCATGGTGAACCTGGTCTTACTGTAACAGCAGGGGCTGGTTTTCCAACTCCTTTACAAGCTCAGACTTTACCAAACCAAAGACATGAGGTCGGAGCTGGCATTGGCTCAAGTGTTTCTACTGACTTTAGTAGAGAAAGGTATGTGCCTTCAAGGAGTGGTGATGGTCTCCCAGTCCTAAAAGGGGAATCAAACATTTTGTTTGTGGATGGACTTCCCACTGACTATACCAGAAGAGAAGTAGGCCATCTATTTCGTCCATTCATTGGCTTTAAAGAAATCAAAGTAGTTCACAAGGAGCCTAGAAGCCTAAGTGCACTCATTTGCCTAAGTGGAGATAAGGCAATGGTTTTATGCTTTGCAGAATTTGTGGATCGAAAGTGTGCTTTGACAGCTATGGAAGCTCTACAAGGAAAAATATATCACTTATCAAGCTCTGAAATGTGGATGTACACAAGTTACAAGTTTGATGACAAGAAACCTGATTCCCTTCCATTGTGGATCCACTTTGCACATTTTCCTTTTCGTCTACCATCTGATTCTGATCAGAAACGAACTGGAATCCGACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

258

Amino Acids

28.73

Weight (kDa)

7.78

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31470 FvH4_2g31470
malus_domestica	MD08G1066100.v1.1 MD15G1055100.v1.1
prunus_persica	Prupe.1G408300_v2.0.a1
pyrus_communis	pycom08g05480 pycom15g05200
rosa_chinensis	RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331
rosa_laevigata	RLG00000010416
rosa_multiflora	Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750
rosa_rugosa	Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1
rosa_samantha	Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800
rosa_wichuraiana	Rw3G022150 Rw5G025820 Rw6G043740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	733
AciI	CCGC	2 cut(s)	5, 32
AclWI	GGATC	5 cut(s)	2, 15, 585, 700, 713
AcsI	RAATTY	1 cut(s)	569
AfaI	GTAC	1 cut(s)	656
AfiI	CCNNNNNNNGG	2 cut(s)	388, 470
AgsI	TTSAA	1 cut(s)	357
AhdI	GACNNNNNGTC	1 cut(s)	293
AjnI	CCWGG	3 cut(s)	58, 169, 217
AluBI	AGCT	5 cut(s)	266, 302, 599, 608, 639
AluI	AGCT	5 cut(s)	266, 302, 599, 608, 639
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	1 cut(s)	377
Alw44I	GTGCAC	1 cut(s)	519
AlwI	GGATC	5 cut(s)	2, 15, 585, 700, 713
AlwNI	CAGNNNCTG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	448
ApaLI	GTGCAC	1 cut(s)	519
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	569
Asp700I	GAANNNNTTC	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	224, 377
BaeGI	GKGCMC	1 cut(s)	523
BamHI	GGATCC	2 cut(s)	7, 705
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	4 cut(s)	362, 407, 459, 745
BciT130I	CCWGG	3 cut(s)	60, 171, 219
BclI	TGATCA	1 cut(s)	748
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	1 cut(s)	507
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	3 cut(s)	60, 171, 219
BmeRI	GACNNNNNGTC	1 cut(s)	293
BmiI	GGNNCC	3 cut(s)	9, 504, 707
BmrFI	CCNGG	3 cut(s)	60, 171, 219
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	2 cut(s)	156, 178
BmuI	ACTGGG	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	747
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 470
Bse1I	ACTGG	2 cut(s)	377, 766
Bse3DI	GCAATG	1 cut(s)	555
Bse8I	GATNNNNATC	1 cut(s)	747
BseBI	CCWGG	3 cut(s)	60, 171, 219
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	3 cut(s)	71, 418, 657
BseJI	GATNNNNATC	1 cut(s)	747
BseLI	CCNNNNNNNGG	2 cut(s)	388, 470
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	2 cut(s)	377, 766
BseSI	GKGCMC	1 cut(s)	523
BseXI	GCAGC	1 cut(s)	13
BshFI	GGCC	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	523
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	388, 470
BsmAI	GTCTC	1 cut(s)	377
BsnI	GGCC	1 cut(s)	450
Bso31I	GGTCTC	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp1407I	TGTACA	1 cut(s)	654
Bsp143I	GATC	4 cut(s)	7, 577, 705, 748
BspACI	CCGC	2 cut(s)	5, 32
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	3 cut(s)	9, 504, 707
BspPI	GGATC	5 cut(s)	2, 15, 585, 700, 713
BspTNI	GGTCTC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	555
BsrGI	TGTACA	1 cut(s)	654
BsrI	ACTGG	2 cut(s)	377, 766
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	4 cut(s)	7, 577, 705, 748
Bst2UI	CCWGG	3 cut(s)	60, 171, 219
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	433
BstAUI	TGTACA	1 cut(s)	654
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	4 cut(s)	149, 267, 515, 533
BstF5I	GGATG	3 cut(s)	71, 418, 657
BstKTI	GATC	4 cut(s)	10, 580, 708, 751
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	4 cut(s)	7, 577, 705, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	596, 605
BstNI	CCWGG	3 cut(s)	60, 171, 219
BstSCI	CCNGG	3 cut(s)	58, 169, 217
BstSLI	GKGCMC	1 cut(s)	523
BstV1I	GCAGC	1 cut(s)	13
BstX2I	RGATCY	2 cut(s)	7, 705
BstYI	RGATCY	2 cut(s)	7, 705
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	3 cut(s)	71, 418, 657
BtsIMutI	CAGTG	2 cut(s)	423, 772
Cac8I	GCNNGC	1 cut(s)	304
CaiI	CAGNNNCTG	1 cut(s)	242
CsiI	ACCWGGT	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	655
CviAII	CATG	2 cut(s)	209, 290
CviQI	GTAC	1 cut(s)	655
DdeI	CTNAG	4 cut(s)	149, 267, 515, 533
DpnI	GATC	4 cut(s)	9, 579, 707, 750
DpnII	GATC	4 cut(s)	7, 577, 705, 748
DraI	TTTAAA	1 cut(s)	478
DriI	GACNNNNNGTC	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	433
Eam1105I	GACNNNNNGTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	433
EciI	GGCGGA	2 cut(s)	20, 21
Eco31I	GGTCTC	1 cut(s)	377
EcoRII	CCWGG	3 cut(s)	58, 169, 217
FaeI	CATG	2 cut(s)	212, 293
FaiI	YATR	9 cut(s)	18, 180, 210, 291, 348, 432, 559, 602, 625
FatI	CATG	2 cut(s)	208, 289
FbaI	TGATCA	1 cut(s)	748
FblI	GTMKAC	1 cut(s)	733
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	3 cut(s)	58, 425, 664
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	2 cut(s)	212, 293
HinfI	GANTC	5 cut(s)	97, 392, 689, 743, 765
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	2 cut(s)	224, 377
Hpy166II	GTNNAC	5 cut(s)	215, 496, 521, 657, 734
Hpy188I	TCNGA	9 cut(s)	76, 139, 270, 299, 643, 742, 748, 753, 770
Hpy8I	GTNNAC	5 cut(s)	215, 496, 521, 657, 734
HpyAV	CCTTC	2 cut(s)	363, 704
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	3 cut(s)	521, 566, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	596, 605
HpyF3I	CTNAG	4 cut(s)	149, 267, 515, 533
Hsp92II	CATG	2 cut(s)	212, 293
Ksp22I	TGATCA	1 cut(s)	748
Kzo9I	GATC	4 cut(s)	7, 577, 705, 748
LmnI	GCTCC	3 cut(s)	34, 299, 502
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	2 cut(s)	156, 178
MabI	ACCWGGT	1 cut(s)	217
MaeI	CTAG	1 cut(s)	507
MaeIII	GTNAC	4 cut(s)	62, 87, 229, 662
MalI	GATC	4 cut(s)	9, 579, 707, 750
MboI	GATC	4 cut(s)	7, 577, 705, 748
MboII	GAAGA	2 cut(s)	126, 450
MflI	RGATCY	2 cut(s)	7, 705
MhlI	GDGCHC	1 cut(s)	523
MluCI	AATT	2 cut(s)	52, 569
MmeI	TCCRAC	2 cut(s)	275, 277
MnlI	CCTC	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	1 cut(s)	477
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	3 cut(s)	60, 171, 219
MvaI	CCWGG	3 cut(s)	60, 171, 219
MwoI	GCNNNNNNNGC	2 cut(s)	596, 605
NdeII	GATC	4 cut(s)	7, 577, 705, 748
NlaIII	CATG	2 cut(s)	212, 293
NlaIV	GGNNCC	3 cut(s)	9, 504, 707
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	5 cut(s)	97, 392, 689, 743, 765
PflMI	CCANNNNNTGG	1 cut(s)	470
PkrI	GCNGC	1 cut(s)	28
Psp6I	CCWGG	3 cut(s)	58, 169, 217
PspGI	CCWGG	3 cut(s)	58, 169, 217
PspN4I	GGNNCC	3 cut(s)	9, 504, 707
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	2 cut(s)	7, 705
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	4 cut(s)	7, 577, 705, 748
ScrFI	CCNGG	3 cut(s)	60, 171, 219
SduI	GDGCHC	1 cut(s)	523
SexAI	ACCWGGT	1 cut(s)	217
SfaNI	GCATC	2 cut(s)	156, 178
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	2 cut(s)	52, 569
SsiI	CCGC	2 cut(s)	5, 32
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	3 cut(s)	58, 169, 217
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	2 cut(s)	95, 580
TasI	AATT	2 cut(s)	52, 569
TatI	WGTACW	1 cut(s)	654
TfiI	GAWTC	5 cut(s)	97, 392, 689, 743, 765
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	197, 457
TspRI	CASTG	1 cut(s)	430
Van91I	CCANNNNNTGG	1 cut(s)	470
VneI	GTGCAC	1 cut(s)	519
XapI	RAATTY	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	733
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.