RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g31470 FvH4_2g31470 |
| malus_domestica | MD08G1066100.v1.1 MD15G1055100.v1.1 |
| prunus_persica | Prupe.1G408300_v2.0.a1 |
| pyrus_communis | pycom08g05480 pycom15g05200 |
| rosa_chinensis | RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331 |
| rosa_laevigata | RLG00000010416 |
| rosa_multiflora | Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017 |
| rosa_roxburghii | Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750 |
| rosa_rugosa | Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1 |
| rosa_samantha | Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800 |
| rosa_wichuraiana | Rw3G022150 Rw5G025820 Rw6G043740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 709 |
| AciI | CCGC | 1 cut(s) | 714 |
| AclI | AACGTT | 1 cut(s) | 441 |
| AclWI | GGATC | 5 cut(s) | 2, 107, 593, 676, 689 |
| AfaI | GTAC | 1 cut(s) | 475 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 245, 325, 512, 719 |
| AgsI | TTSAA | 1 cut(s) | 635 |
| AjnI | CCWGG | 3 cut(s) | 73, 187, 388 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 228, 260, 720, 752 |
| AluBI | AGCT | 3 cut(s) | 69, 269, 629 |
| AluI | AGCT | 3 cut(s) | 69, 269, 629 |
| Alw26I | GTCTC | 1 cut(s) | 316 |
| AlwI | GGATC | 5 cut(s) | 2, 107, 593, 676, 689 |
| AoxI | GGCC | 4 cut(s) | 62, 192, 383, 490 |
| ApeKI | GCWGC | 4 cut(s) | 254, 329, 332, 335 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 240, 630 |
| AspS9I | GGNCC | 2 cut(s) | 192, 413 |
| AsuNHI | GCTAGC | 1 cut(s) | 269 |
| AvaII | GGWCC | 1 cut(s) | 413 |
| BamHI | GGATCC | 1 cut(s) | 681 |
| BbvI | GCAGC | 4 cut(s) | 266, 316, 319, 322 |
| BccI | CCATC | 4 cut(s) | 295, 404, 449, 713 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 653, 687 |
| BciT130I | CCWGG | 3 cut(s) | 75, 189, 390 |
| BcoDI | GTCTC | 1 cut(s) | 316 |
| BfaI | CTAG | 2 cut(s) | 270, 549 |
| BfmI | CTRYAG | 1 cut(s) | 336 |
| BisI | GCNGC | 4 cut(s) | 255, 330, 333, 336 |
| BlpI | GCTNAGC | 1 cut(s) | 314 |
| BlsI | GCNGC | 4 cut(s) | 256, 331, 334, 337 |
| Bme1390I | CCNGG | 3 cut(s) | 75, 189, 390 |
| Bme18I | GGWCC | 1 cut(s) | 413 |
| BmgT120I | GGNCC | 2 cut(s) | 192, 413 |
| BmiI | GGNNCC | 3 cut(s) | 193, 546, 683 |
| BmrFI | CCNGG | 3 cut(s) | 75, 189, 390 |
| BmrI | ACTGGG | 1 cut(s) | 222 |
| BmsI | GCATC | 1 cut(s) | 266 |
| BmtI | GCTAGC | 1 cut(s) | 273 |
| BmuI | ACTGGG | 1 cut(s) | 222 |
| BpmI | CTGGAG | 1 cut(s) | 402 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 314 |
| BsaBI | GATNNNNATC | 1 cut(s) | 12 |
| BsaJI | CCNNGG | 3 cut(s) | 187, 188, 746 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 121, 151 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 245, 325, 512, 719 |
| Bse1I | ACTGG | 3 cut(s) | 40, 217, 419 |
| Bse3DI | GCAATG | 4 cut(s) | 58, 101, 409, 730 |
| Bse8I | GATNNNNATC | 1 cut(s) | 12 |
| BseBI | CCWGG | 3 cut(s) | 75, 189, 390 |
| BseDI | CCNNGG | 3 cut(s) | 187, 188, 746 |
| BseGI | GGATG | 1 cut(s) | 211 |
| BseJI | GATNNNNATC | 1 cut(s) | 12 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 245, 325, 512, 719 |
| BseMI | GCAATG | 4 cut(s) | 58, 101, 409, 730 |
| BseMII | CTCAG | 1 cut(s) | 123 |
| BseNI | ACTGG | 3 cut(s) | 40, 217, 419 |
| BseXI | GCAGC | 4 cut(s) | 266, 316, 319, 322 |
| BshFI | GGCC | 4 cut(s) | 64, 194, 385, 492 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 245, 325, 512, 719 |
| BsmAI | GTCTC | 1 cut(s) | 316 |
| BsmI | GAATGC | 1 cut(s) | 219 |
| BsnI | GGCC | 4 cut(s) | 64, 194, 385, 492 |
| Bsp143I | GATC | 5 cut(s) | 7, 112, 176, 598, 681 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 314 |
| BspACI | CCGC | 1 cut(s) | 714 |
| BspANI | GGCC | 4 cut(s) | 64, 194, 385, 492 |
| BspCNI | CTCAG | 1 cut(s) | 124 |
| BspLI | GGNNCC | 3 cut(s) | 193, 546, 683 |
| BspMAI | CTGCAG | 1 cut(s) | 340 |
| BspOI | GCTAGC | 1 cut(s) | 273 |
| BspPI | GGATC | 5 cut(s) | 2, 107, 593, 676, 689 |
| BspQI | GCTCTTC | 1 cut(s) | 636 |
| BsrDI | GCAATG | 4 cut(s) | 58, 101, 409, 730 |
| BsrI | ACTGG | 3 cut(s) | 40, 217, 419 |
| BssECI | CCNNGG | 3 cut(s) | 187, 188, 746 |
| BssMI | GATC | 5 cut(s) | 7, 112, 176, 598, 681 |
| Bst2UI | CCWGG | 3 cut(s) | 75, 189, 390 |
| Bst4CI | ACNGT | 2 cut(s) | 473, 750 |
| Bst6I | CTCTTC | 3 cut(s) | 126, 475, 636 |
| BstC8I | GCNNGC | 1 cut(s) | 271 |
| BstDEI | CTNAG | 2 cut(s) | 132, 314 |
| BstDSI | CCRYGG | 1 cut(s) | 746 |
| BstF5I | GGATG | 1 cut(s) | 211 |
| BstKTI | GATC | 5 cut(s) | 10, 115, 179, 601, 684 |
| BstMAI | GTCTC | 1 cut(s) | 316 |
| BstMBI | GATC | 5 cut(s) | 7, 112, 176, 598, 681 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 260, 279, 335, 399, 617, 626 |
| BstNI | CCWGG | 3 cut(s) | 75, 189, 390 |
| BstSCI | CCNGG | 3 cut(s) | 73, 187, 388 |
| BstSFI | CTRYAG | 1 cut(s) | 336 |
| BstV1I | GCAGC | 4 cut(s) | 266, 316, 319, 322 |
| BstX2I | RGATCY | 1 cut(s) | 681 |
| BstYI | RGATCY | 1 cut(s) | 681 |
| BsuRI | GGCC | 4 cut(s) | 64, 194, 385, 492 |
| BtgI | CCRYGG | 1 cut(s) | 746 |
| BtsCI | GGATG | 1 cut(s) | 211 |
| BtsIMutI | CAGTG | 2 cut(s) | 33, 39 |
| Cac8I | GCNNGC | 1 cut(s) | 271 |
| Cfr13I | GGNCC | 2 cut(s) | 192, 413 |
| Csp6I | GTAC | 1 cut(s) | 474 |
| CviQI | GTAC | 1 cut(s) | 474 |
| DdeI | CTNAG | 2 cut(s) | 132, 314 |
| DpnI | GATC | 5 cut(s) | 9, 114, 178, 600, 683 |
| DpnII | GATC | 5 cut(s) | 7, 112, 176, 598, 681 |
| DraI | TTTAAA | 1 cut(s) | 520 |
| Eam1104I | CTCTTC | 3 cut(s) | 126, 475, 636 |
| EarI | CTCTTC | 3 cut(s) | 126, 475, 636 |
| Eco147I | AGGCCT | 1 cut(s) | 385 |
| Eco32I | GATATC | 1 cut(s) | 652 |
| Eco47I | GGWCC | 1 cut(s) | 413 |
| EcoO109I | RGGNCCY | 1 cut(s) | 192 |
| EcoRII | CCWGG | 3 cut(s) | 73, 187, 388 |
| EcoRV | GATATC | 1 cut(s) | 652 |
| FauI | CCCGC | 1 cut(s) | 721 |
| FblI | GTMKAC | 1 cut(s) | 709 |
| Fnu4HI | GCNGC | 4 cut(s) | 255, 330, 333, 336 |
| FokI | GGATG | 1 cut(s) | 218 |
| Fsp4HI | GCNGC | 4 cut(s) | 255, 330, 333, 336 |
| FspBI | CTAG | 2 cut(s) | 270, 549 |
| GluI | GCNGC | 4 cut(s) | 255, 330, 333, 336 |
| GsuI | CTGGAG | 1 cut(s) | 402 |
| HaeIII | GGCC | 4 cut(s) | 64, 194, 385, 492 |
| HindIII | AAGCTT | 1 cut(s) | 67 |
| HinfI | GANTC | 3 cut(s) | 434, 665, 741 |
| Hpy166II | GTNNAC | 2 cut(s) | 538, 710 |
| Hpy188I | TCNGA | 4 cut(s) | 91, 141, 154, 426 |
| Hpy188III | TCNNGA | 1 cut(s) | 655 |
| Hpy8I | GTNNAC | 2 cut(s) | 538, 710 |
| HpyCH4III | ACNGT | 2 cut(s) | 473, 750 |
| HpyCH4IV | ACGT | 2 cut(s) | 441, 553 |
| HpyCH4V | TGCA | 5 cut(s) | 163, 338, 353, 674, 692 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 260, 279, 335, 399, 617, 626 |
| HpyF3I | CTNAG | 2 cut(s) | 132, 314 |
| HpySE526I | ACGT | 2 cut(s) | 441, 553 |
| Kzo9I | GATC | 5 cut(s) | 7, 112, 176, 598, 681 |
| LguI | GCTCTTC | 1 cut(s) | 636 |
| LmnI | GCTCC | 2 cut(s) | 266, 544 |
| Lsp1109I | GCAGC | 4 cut(s) | 266, 316, 319, 322 |
| LweI | GCATC | 1 cut(s) | 266 |
| MaeI | CTAG | 2 cut(s) | 270, 549 |
| MaeII | ACGT | 2 cut(s) | 441, 553 |
| MaeIII | GTNAC | 2 cut(s) | 77, 638 |
| MalI | GATC | 5 cut(s) | 9, 114, 178, 600, 683 |
| MboI | GATC | 5 cut(s) | 7, 112, 176, 598, 681 |
| MboII | GAAGA | 4 cut(s) | 113, 492, 623, 660 |
| MflI | RGATCY | 1 cut(s) | 681 |
| MluCI | AATT | 2 cut(s) | 686, 735 |
| MnlI | CCTC | 7 cut(s) | 41, 109, 136, 147, 396, 426, 672 |
| MroXI | GAANNNNTTC | 2 cut(s) | 240, 630 |
| MseI | TTAA | 1 cut(s) | 519 |
| MspR9I | CCNGG | 3 cut(s) | 75, 189, 390 |
| Mva1269I | GAATGC | 1 cut(s) | 219 |
| MvaI | CCWGG | 3 cut(s) | 75, 189, 390 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 260, 279, 335, 399, 617, 626 |
| NdeII | GATC | 5 cut(s) | 7, 112, 176, 598, 681 |
| NheI | GCTAGC | 1 cut(s) | 269 |
| NlaIV | GGNNCC | 3 cut(s) | 193, 546, 683 |
| PasI | CCCWGGG | 1 cut(s) | 188 |
| PceI | AGGCCT | 1 cut(s) | 385 |
| PciSI | GCTCTTC | 1 cut(s) | 636 |
| PctI | GAATGC | 1 cut(s) | 219 |
| PdmI | GAANNNNTTC | 2 cut(s) | 240, 630 |
| PfeI | GAWTC | 3 cut(s) | 434, 665, 741 |
| PkrI | GCNGC | 4 cut(s) | 256, 331, 334, 337 |
| Psp1406I | AACGTT | 1 cut(s) | 441 |
| Psp6I | CCWGG | 3 cut(s) | 73, 187, 388 |
| PspGI | CCWGG | 3 cut(s) | 73, 187, 388 |
| PspN4I | GGNNCC | 3 cut(s) | 193, 546, 683 |
| PspPI | GGNCC | 2 cut(s) | 192, 413 |
| PstI | CTGCAG | 1 cut(s) | 340 |
| PsuI | RGATCY | 1 cut(s) | 681 |
| RsaI | GTAC | 1 cut(s) | 475 |
| RsaNI | GTAC | 1 cut(s) | 474 |
| SapI | GCTCTTC | 1 cut(s) | 636 |
| SaqAI | TTAA | 1 cut(s) | 519 |
| SatI | GCNGC | 4 cut(s) | 255, 330, 333, 336 |
| Sau3AI | GATC | 5 cut(s) | 7, 112, 176, 598, 681 |
| Sau96I | GGNCC | 2 cut(s) | 192, 413 |
| ScrFI | CCNGG | 3 cut(s) | 75, 189, 390 |
| SetI | ASST | 7 cut(s) | 71, 241, 271, 444, 556, 631, 640 |
| SfaNI | GCATC | 1 cut(s) | 266 |
| SfcI | CTRYAG | 1 cut(s) | 336 |
| SinI | GGWCC | 1 cut(s) | 413 |
| Sse9I | AATT | 2 cut(s) | 686, 735 |
| SseBI | AGGCCT | 1 cut(s) | 385 |
| SsiI | CCGC | 1 cut(s) | 714 |
| SspMI | CTAG | 2 cut(s) | 270, 549 |
| StuI | AGGCCT | 1 cut(s) | 385 |
| StyD4I | CCNGG | 3 cut(s) | 73, 187, 388 |
| TaaI | ACNGT | 2 cut(s) | 473, 750 |
| TaiI | ACGT | 2 cut(s) | 444, 556 |
| TaqI | TCGA | 3 cut(s) | 111, 223, 229 |
| TasI | AATT | 2 cut(s) | 686, 735 |
| TfiI | GAWTC | 3 cut(s) | 434, 665, 741 |
| Tru1I | TTAA | 1 cut(s) | 519 |
| Tru9I | TTAA | 1 cut(s) | 519 |
| TscAI | CASTG | 2 cut(s) | 40, 46 |
| TseI | GCWGC | 4 cut(s) | 254, 329, 332, 335 |
| TspDTI | ATGAA | 1 cut(s) | 741 |
| TspGWI | ACGGA | 1 cut(s) | 491 |
| TspRI | CASTG | 2 cut(s) | 40, 46 |
| VpaK11BI | GGWCC | 1 cut(s) | 413 |
| XmiI | GTMKAC | 1 cut(s) | 709 |
| XmnI | GAANNNNTTC | 2 cut(s) | 240, 630 |
| XspI | CTAG | 2 cut(s) | 270, 549 |